Wall clock time and date at job start Thu Apr 9 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46892 * 111.00216 * 2 1 4 4 C 1.46906 * 111.00108 * 123.95898 * 2 1 3 5 5 C 1.52999 * 109.46904 * 169.99922 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46998 * 179.97438 * 6 5 4 8 8 C 1.38818 * 120.00409 * 179.97438 * 7 6 5 9 9 C 1.39800 * 119.58213 * 359.97438 * 8 7 6 10 10 C 1.38591 * 119.49462 * 179.97438 * 9 8 7 11 11 C 1.38388 * 118.68033 * 0.02562 * 10 9 8 12 12 C 1.40560 * 119.14925 * 359.97438 * 11 10 9 13 13 C 1.41315 * 119.78847 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99580 * 0.02562 * 13 12 11 15 15 C 1.40022 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.30744 * 119.99674 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47272 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.47280 * 210.00052 * 17 15 13 20 20 H 1.48501 * 109.47117 * 330.00318 * 17 15 13 21 21 N 1.31950 * 119.58965 * 179.72765 * 8 7 6 22 22 H 1.09000 * 109.46971 * 296.04632 * 1 2 3 23 23 H 1.08997 * 109.47483 * 56.04321 * 1 2 3 24 24 H 1.08999 * 109.47330 * 176.05051 * 1 2 3 25 25 H 1.09005 * 109.47010 * 183.95794 * 3 2 1 26 26 H 1.08998 * 109.47527 * 303.95325 * 3 2 1 27 27 H 1.09001 * 109.47410 * 63.95283 * 3 2 1 28 28 H 1.08993 * 109.47034 * 49.99231 * 4 2 1 29 29 H 1.09000 * 109.46693 * 289.99572 * 4 2 1 30 30 H 1.08993 * 109.47839 * 59.99803 * 5 4 2 31 31 H 1.09000 * 109.47160 * 299.99365 * 5 4 2 32 32 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 33 33 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 34 34 H 0.97010 * 119.99910 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.25279 * 359.97438 * 9 8 7 36 36 H 1.07995 * 120.66279 * 180.02562 * 10 9 8 37 37 H 1.07993 * 120.42982 * 179.97438 * 11 10 9 38 38 H 0.97002 * 119.99757 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9702 6 6 4.0528 -1.7528 2.1553 7 7 5.4976 -1.9346 1.9949 8 6 6.2202 -2.6321 2.9533 9 6 5.5604 -3.1568 4.0685 10 6 6.2834 -3.8533 5.0240 11 6 7.6466 -4.0081 4.8428 12 6 8.2524 -3.4572 3.7004 13 6 9.6436 -3.6067 3.5022 14 1 10.2377 -4.1434 4.2272 15 6 10.2517 -3.0602 2.3655 16 7 9.5323 -2.4110 1.4877 17 14 12.0904 -3.2586 2.1032 18 1 12.3497 -4.5046 1.3379 19 1 12.6106 -2.0936 1.3433 20 1 12.7728 -3.3354 3.4199 21 7 7.5202 -2.7957 2.7978 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5089 -1.7407 1.1756 29 1 1.7976 -0.2249 2.0628 30 1 3.9910 0.0191 0.9322 31 1 3.7023 -1.4967 0.0450 32 1 3.8550 -1.2112 3.0804 33 1 3.5663 -2.7274 2.1937 34 1 5.9494 -1.5677 1.2188 35 1 4.4953 -3.0205 4.1846 36 1 5.7928 -4.2669 5.8926 37 1 8.2375 -4.5453 5.5699 38 1 9.9535 -2.0327 0.7000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262675181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:16 Heat of formation + Delta-G solvation = 37.727764 kcal Electronic energy + Delta-G solvation = -17499.975003 eV Core-core repulsion = 14763.193744 eV Total energy + Delta-G solvation = -2736.781259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.35596 -37.78432 -35.32842 -33.35965 -31.59639 -30.23840 -28.59621 -27.76696 -25.70451 -25.23217 -22.59504 -21.51987 -20.65551 -20.24830 -17.32192 -16.22733 -15.87966 -15.64725 -14.88908 -14.66983 -14.53463 -14.51560 -14.01083 -13.15378 -12.93452 -12.86119 -12.55956 -12.18643 -11.97117 -11.88943 -11.76045 -11.40750 -11.17608 -11.11175 -10.95204 -10.65681 -10.56362 -10.38170 -9.87705 -9.43912 -8.83725 -8.54098 -7.86638 -7.46530 -6.46077 -6.28604 -4.43451 2.91314 3.13647 3.17002 3.28069 3.33990 3.72089 4.01587 4.31276 4.87632 4.90503 4.96802 5.09324 5.21004 5.32841 5.40327 5.46063 5.57130 5.64175 5.71801 5.77050 5.91370 6.08389 6.19567 6.29070 6.34289 6.62394 6.83964 6.85220 6.90660 6.93885 6.99995 7.29493 7.64422 7.86028 7.96434 8.21313 8.41701 8.74129 8.84842 9.16927 10.29181 10.44857 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.004259 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.664280 B = 6572.784562 C = 7424.833627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.020 3.980 4 C 0.059 3.941 5 C -0.127 4.127 6 C 0.144 3.856 7 N -0.739 5.739 8 C 0.411 3.589 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.318 4.318 12 C 0.292 3.708 13 C -0.435 4.435 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.532 5.532 22 H 0.024 0.976 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.395 0.605 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 5.249 -3.201 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.070 4.070 5 C -0.165 4.165 6 C 0.018 3.982 7 N -0.376 5.376 8 C 0.171 3.829 9 C -0.394 4.394 10 C -0.057 4.057 11 C -0.341 4.341 12 C 0.165 3.835 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.154 4.154 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.254 5.254 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.761 5.454 -4.458 13.709 hybrid contribution 0.174 0.126 1.104 1.125 sum -11.587 5.580 -3.354 13.291 Atomic orbital electron populations 1.22374 0.87431 1.02257 1.00321 1.61961 1.07703 1.14070 1.43531 1.22455 1.01491 0.88636 1.00236 1.22052 0.95549 0.98292 0.91074 1.21754 0.94287 1.01066 0.99371 1.20951 0.81998 0.98514 0.96765 1.44117 1.05425 1.62194 1.25843 1.18534 0.89935 0.88177 0.86247 1.20608 0.98418 1.18898 1.01430 1.20589 0.94010 0.95112 0.95950 1.21530 0.94669 1.14614 1.03258 1.18204 0.92872 0.86292 0.86099 1.19575 0.91802 1.30041 1.05317 0.89925 1.26048 0.99875 0.93905 0.95551 1.70158 1.36085 1.21059 1.06487 0.86379 0.82760 0.78552 0.79366 1.19519 1.20271 1.18631 1.68216 1.02059 1.23983 1.31119 0.95761 0.91481 0.91320 0.90766 0.91588 0.95675 0.90493 0.94583 0.91429 0.90523 0.93400 0.93163 0.77008 0.89255 0.88990 0.88741 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 60.06 0.57 0.79 16 2 N -0.55 -5.90 5.02 -251.27 -1.26 -7.16 16 3 C 0.02 0.19 9.32 60.06 0.56 0.75 16 4 C 0.06 0.65 4.96 -3.82 -0.02 0.63 16 5 C -0.13 -1.62 5.25 -26.73 -0.14 -1.76 16 6 C 0.14 2.29 4.88 -4.04 -0.02 2.27 16 7 N -0.74 -15.23 5.72 -60.39 -0.35 -15.58 16 8 C 0.41 10.34 7.65 -155.33 -1.19 9.15 16 9 C -0.37 -8.73 9.34 -38.87 -0.36 -9.09 16 10 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 11 C -0.32 -8.24 9.83 -38.65 -0.38 -8.62 16 12 C 0.29 8.33 6.55 -85.00 -0.56 7.78 16 13 C -0.44 -12.02 9.14 -37.74 -0.34 -12.36 16 14 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 15 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 16 N -0.72 -19.36 11.46 55.55 0.64 -18.72 16 17 Si 0.91 19.00 29.56 -169.99 -5.02 13.97 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 N -0.53 -15.08 7.89 -10.33 -0.08 -15.16 16 22 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 24 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 26 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.81 8.06 -51.93 -0.42 0.40 16 29 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 33 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 34 H 0.40 8.12 8.59 -40.82 -0.35 7.77 16 35 H 0.09 1.89 6.68 -52.48 -0.35 1.53 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -30.43 314.46 -9.67 -40.10 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.97 Total: 7.68 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.37 Total: -9.88 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.05 Total: -56.62 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.43 -9.67 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262675181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.832 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds