Wall clock time and date at job start Thu Apr 9 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46892 * 111.00216 * 2 1 4 4 C 1.46906 * 111.00108 * 123.95898 * 2 1 3 5 5 C 1.52999 * 109.46904 * 169.99922 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46998 * 179.97438 * 6 5 4 8 8 C 1.38818 * 120.00409 * 179.97438 * 7 6 5 9 9 C 1.39800 * 119.58213 * 359.97438 * 8 7 6 10 10 C 1.38591 * 119.49462 * 179.97438 * 9 8 7 11 11 C 1.38388 * 118.68033 * 0.02562 * 10 9 8 12 12 C 1.40560 * 119.14925 * 359.97438 * 11 10 9 13 13 C 1.41315 * 119.78847 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99580 * 0.02562 * 13 12 11 15 15 C 1.40022 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.30744 * 119.99674 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47272 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.47280 * 210.00052 * 17 15 13 20 20 H 1.48501 * 109.47117 * 330.00318 * 17 15 13 21 21 N 1.31950 * 119.58965 * 179.72765 * 8 7 6 22 22 H 1.09000 * 109.46971 * 296.04632 * 1 2 3 23 23 H 1.08997 * 109.47483 * 56.04321 * 1 2 3 24 24 H 1.08999 * 109.47330 * 176.05051 * 1 2 3 25 25 H 1.09005 * 109.47010 * 183.95794 * 3 2 1 26 26 H 1.08998 * 109.47527 * 303.95325 * 3 2 1 27 27 H 1.09001 * 109.47410 * 63.95283 * 3 2 1 28 28 H 1.08993 * 109.47034 * 49.99231 * 4 2 1 29 29 H 1.09000 * 109.46693 * 289.99572 * 4 2 1 30 30 H 1.08993 * 109.47839 * 59.99803 * 5 4 2 31 31 H 1.09000 * 109.47160 * 299.99365 * 5 4 2 32 32 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 33 33 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 34 34 H 0.97010 * 119.99910 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.25279 * 359.97438 * 9 8 7 36 36 H 1.07995 * 120.66279 * 180.02562 * 10 9 8 37 37 H 1.07993 * 120.42982 * 179.97438 * 11 10 9 38 38 H 0.97002 * 119.99757 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9702 6 6 4.0528 -1.7528 2.1553 7 7 5.4976 -1.9346 1.9949 8 6 6.2202 -2.6321 2.9533 9 6 5.5604 -3.1568 4.0685 10 6 6.2834 -3.8533 5.0240 11 6 7.6466 -4.0081 4.8428 12 6 8.2524 -3.4572 3.7004 13 6 9.6436 -3.6067 3.5022 14 1 10.2377 -4.1434 4.2272 15 6 10.2517 -3.0602 2.3655 16 7 9.5323 -2.4110 1.4877 17 14 12.0904 -3.2586 2.1032 18 1 12.3497 -4.5046 1.3379 19 1 12.6106 -2.0936 1.3433 20 1 12.7728 -3.3354 3.4199 21 7 7.5202 -2.7957 2.7978 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5089 -1.7407 1.1756 29 1 1.7976 -0.2249 2.0628 30 1 3.9910 0.0191 0.9322 31 1 3.7023 -1.4967 0.0450 32 1 3.8550 -1.2112 3.0804 33 1 3.5663 -2.7274 2.1937 34 1 5.9494 -1.5677 1.2188 35 1 4.4953 -3.0205 4.1846 36 1 5.7928 -4.2669 5.8926 37 1 8.2375 -4.5453 5.5699 38 1 9.9535 -2.0327 0.7000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262675181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:16 Heat of formation + Delta-G solvation = 18.135500 kcal Electronic energy + Delta-G solvation = -17500.824587 eV Core-core repulsion = 14763.193744 eV Total energy + Delta-G solvation = -2737.630844 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14213 -38.78263 -36.85709 -35.21720 -33.03187 -32.13141 -30.30335 -28.48586 -27.33735 -26.70447 -23.87094 -23.20250 -22.04993 -21.71749 -19.25352 -17.97651 -16.89036 -16.78951 -16.46665 -16.29920 -15.77904 -15.58519 -15.51923 -14.82053 -14.62142 -14.36235 -13.74703 -13.44693 -13.28111 -12.91908 -12.81747 -12.71410 -12.65717 -12.59825 -12.42341 -12.16865 -12.11199 -11.75028 -11.69245 -11.24835 -10.64483 -9.82955 -9.44203 -9.32468 -8.29021 -8.21990 -6.47449 1.06887 1.35059 1.42217 1.55556 1.59769 2.26023 2.58778 2.93438 3.09253 3.94156 4.05891 4.12379 4.15720 4.34004 4.38990 4.48035 4.54562 4.59446 4.66888 4.74044 4.77210 4.82320 4.99706 5.01325 5.01405 5.02314 5.10529 5.18829 5.24480 5.39991 5.72464 5.97116 6.03919 6.08525 6.10354 6.23710 6.57142 6.84481 6.95931 7.22858 8.35237 8.52310 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.004259 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.664280 B = 6572.784562 C = 7424.833627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.565 5.565 3 C 0.019 3.981 4 C 0.064 3.936 5 C -0.113 4.113 6 C 0.144 3.856 7 N -0.735 5.735 8 C 0.392 3.608 9 C -0.368 4.368 10 C -0.030 4.030 11 C -0.345 4.345 12 C 0.258 3.742 13 C -0.472 4.472 14 H 0.087 0.913 15 C 0.025 3.975 16 N -0.752 5.752 17 Si 0.987 3.013 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.257 1.257 21 N -0.567 5.567 22 H 0.029 0.971 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 5.504 -3.259 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.289 5.289 3 C -0.129 4.129 4 C -0.064 4.064 5 C -0.151 4.151 6 C 0.019 3.981 7 N -0.371 5.371 8 C 0.151 3.849 9 C -0.394 4.394 10 C -0.054 4.054 11 C -0.368 4.368 12 C 0.131 3.869 13 C -0.504 4.504 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.375 5.375 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.193 1.193 20 H -0.180 1.180 21 N -0.290 5.290 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.704 5.722 -4.517 14.647 hybrid contribution 0.285 0.074 1.123 1.161 sum -12.418 5.796 -3.394 14.119 Atomic orbital electron populations 1.22426 0.86022 1.02879 1.01057 1.61951 1.09082 1.14540 1.43298 1.22473 1.01019 0.88407 1.00974 1.21962 0.93960 0.98936 0.91572 1.21607 0.95673 1.00239 0.97569 1.21156 0.79282 0.99308 0.98333 1.44334 1.07060 1.60964 1.24700 1.19010 0.89686 0.88541 0.87640 1.20965 0.99851 1.17901 1.00687 1.21013 0.93298 0.94128 0.96951 1.21701 0.96053 1.15779 1.03257 1.18698 0.93827 0.87137 0.87256 1.19945 0.92254 1.31505 1.06682 0.89526 1.26976 1.05096 0.92972 0.94611 1.70255 1.38436 1.21713 1.07058 0.85144 0.75878 0.78793 0.79428 1.18827 1.19274 1.18021 1.68190 1.03646 1.25143 1.31989 0.95255 0.90446 0.90858 0.91635 0.90379 0.95345 0.89836 0.94133 0.91549 0.91253 0.92912 0.92696 0.77349 0.86355 0.85215 0.87907 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.57 127.69 1.22 1.58 16 2 N -0.56 -11.07 5.02 -948.87 -4.76 -15.83 16 3 C 0.02 0.34 9.32 127.69 1.19 1.53 16 4 C 0.06 1.30 4.96 86.30 0.43 1.73 16 5 C -0.11 -2.75 5.25 30.60 0.16 -2.59 16 6 C 0.14 4.37 4.88 86.38 0.42 4.80 16 7 N -0.74 -30.21 5.72 -344.98 -1.97 -32.18 16 8 C 0.39 19.80 7.65 133.42 1.02 20.82 16 9 C -0.37 -17.03 9.34 22.73 0.21 -16.82 16 10 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 11 C -0.34 -18.06 9.83 22.87 0.22 -17.84 16 12 C 0.26 15.11 6.55 40.18 0.26 15.37 16 13 C -0.47 -26.77 9.14 23.46 0.21 -26.56 16 14 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 15 C 0.03 1.32 5.50 85.29 0.47 1.79 16 16 N -0.75 -41.60 11.46 21.84 0.25 -41.35 16 17 Si 0.99 39.29 29.56 68.60 2.03 41.32 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 N -0.57 -32.91 7.89 -186.59 -1.47 -34.38 16 22 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 24 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 25 H 0.06 1.25 6.47 -2.38 -0.02 1.24 16 26 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 27 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 1.58 8.06 -2.39 -0.02 1.56 16 29 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.07 1.65 6.55 -2.39 -0.02 1.63 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.58 7.92 -2.39 -0.02 1.56 16 33 H 0.05 1.64 7.92 -2.39 -0.02 1.62 16 34 H 0.39 16.36 8.59 -92.70 -0.80 15.57 16 35 H 0.12 4.68 6.68 -2.91 -0.02 4.66 16 36 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 37 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -66.31 314.46 0.37 -65.94 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.24 Total: 33.82 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 6.05 Total: -17.35 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -7.96 Total: -123.74 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -66.31 0.37 -65.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262675181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.079 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds