Wall clock time and date at job start Thu Apr 9 2020 12:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47450 * 312.03325 * 3 2 1 5 5 C 1.36939 * 119.99982 * 263.97797 * 4 3 2 6 6 H 1.08003 * 119.99973 * 198.19107 * 5 4 3 7 7 C 1.38814 * 120.00055 * 18.18157 * 5 4 3 8 8 N 1.31619 * 120.00091 * 23.16154 * 7 5 4 9 9 Si 1.86802 * 120.00212 * 203.15444 * 7 5 4 10 10 H 1.48498 * 109.46939 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46899 * 120.00320 * 9 7 5 12 12 H 1.48498 * 109.47267 * 240.00542 * 9 7 5 13 13 C 1.46492 * 120.00028 * 83.96812 * 4 3 2 14 14 C 1.53000 * 109.47056 * 90.00507 * 13 4 3 15 15 H 1.09000 * 109.47193 * 305.00071 * 14 13 4 16 16 C 1.53000 * 109.47102 * 64.99681 * 14 13 4 17 17 C 1.53009 * 109.47267 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47108 * 300.00439 * 17 16 14 19 19 C 1.53000 * 109.47414 * 59.99651 * 18 17 16 20 20 H 1.09000 * 109.46778 * 60.00108 * 19 18 17 21 21 C 1.52998 * 109.47414 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.46931 * 295.00422 * 21 19 18 23 23 C 1.52999 * 109.47528 * 184.99910 * 14 13 4 24 24 H 4.40641 * 5.51407 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.46846 * 192.03219 * 3 2 1 26 26 H 1.09005 * 109.47382 * 72.03416 * 3 2 1 27 27 H 0.96994 * 120.00432 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47694 * 330.00468 * 13 4 3 29 29 H 1.09002 * 109.47306 * 210.00132 * 13 4 3 30 30 H 1.08999 * 109.47192 * 60.00478 * 16 14 13 31 31 H 1.08997 * 109.47499 * 300.00194 * 16 14 13 32 32 H 1.08999 * 109.46619 * 60.00134 * 17 16 14 33 33 H 1.08997 * 109.46794 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.46950 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47060 * 299.99932 * 18 17 16 36 36 H 1.08995 * 109.46938 * 54.99824 * 21 19 18 37 37 H 1.08993 * 109.47136 * 175.00162 * 21 19 18 38 38 H 1.08997 * 109.46852 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.46877 * 299.99345 * 22 21 19 40 40 H 1.08993 * 109.47423 * 59.99916 * 22 21 19 41 41 H 1.08999 * 109.46983 * 59.99633 * 23 14 13 42 42 H 1.09000 * 109.47016 * 300.00270 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -0.9239 1.0259 5 6 3.4801 -0.4522 2.2642 6 1 4.1030 -1.0483 2.9147 7 6 3.0297 0.7921 2.6834 8 7 1.9489 1.3163 2.1454 9 14 3.9575 1.7227 4.0111 10 1 5.1297 0.9230 4.4489 11 1 4.4217 3.0254 3.4701 12 1 3.0589 1.9596 5.1694 13 6 3.2539 -2.3531 0.7271 14 6 4.6478 -2.6424 0.1665 15 1 4.8331 -2.0013 -0.6953 16 6 5.6984 -2.3651 1.2436 17 6 7.0923 -2.6550 0.6832 18 6 7.1751 -4.1217 0.2555 19 6 6.1245 -4.3990 -0.8216 20 1 6.3101 -3.7582 -1.6836 21 6 6.2069 -5.8658 -1.2488 22 6 7.5558 -6.1258 -1.9224 23 6 4.7311 -4.1089 -0.2616 24 1 -1.0499 -0.0003 0.0001 25 1 3.0088 1.0060 0.2142 26 1 3.0095 -0.3162 -0.9776 27 1 1.6344 2.1860 2.4380 28 1 2.5007 -2.6345 -0.0089 29 1 3.1028 -2.9290 1.6401 30 1 5.5132 -3.0062 2.1054 31 1 5.6391 -1.3203 1.5486 32 1 7.2778 -2.0142 -0.1788 33 1 7.8407 -2.4578 1.4507 34 1 8.1683 -4.3283 -0.1433 35 1 6.9896 -4.7625 1.1175 36 1 6.1096 -6.5056 -0.3718 37 1 5.4021 -6.0857 -1.9501 38 1 7.6143 -7.1706 -2.2272 39 1 7.6532 -5.4859 -2.7996 40 1 8.3606 -5.9059 -1.2211 41 1 3.9826 -4.3065 -1.0290 42 1 4.5458 -4.7500 0.6002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462625272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:39 Heat of formation + Delta-G solvation = 29.768768 kcal Electronic energy + Delta-G solvation = -18843.173219 eV Core-core repulsion = 16209.587175 eV Total energy + Delta-G solvation = -2633.586044 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.07189 -37.76770 -34.94865 -33.48890 -33.13277 -31.57964 -29.78235 -27.91447 -27.13243 -24.55040 -23.35827 -22.62299 -20.70438 -20.58489 -19.19764 -18.12321 -16.96679 -16.17172 -15.76478 -15.63808 -15.39890 -14.92684 -14.84276 -14.55021 -14.20617 -13.91506 -13.44985 -13.26735 -13.15336 -12.87598 -12.71234 -12.53832 -12.28458 -12.19312 -11.97900 -11.93879 -11.74235 -11.72909 -11.39212 -11.19754 -10.87196 -10.74366 -10.61062 -10.55981 -10.30239 -8.82636 -7.78792 -5.18213 1.45800 1.50103 1.58472 2.33687 2.53048 2.61487 3.31588 3.74359 3.88242 3.97042 4.04992 4.12677 4.26208 4.41192 4.51872 4.54168 4.65662 4.69585 4.77160 4.85193 4.89875 4.91409 4.96234 4.98144 5.10400 5.14139 5.22922 5.26935 5.30517 5.31795 5.42209 5.43911 5.51821 5.58474 5.64374 5.68160 5.71102 5.80480 5.81424 6.34771 7.15373 7.35985 7.89712 8.33686 9.23254 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.006110 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.751503 B = 4581.250355 C = 5486.075730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.133 4.133 3 C 0.272 3.728 4 N -0.597 5.597 5 C -0.250 4.250 6 H 0.076 0.924 7 C -0.050 4.050 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.301 1.301 13 C 0.153 3.847 14 C -0.089 4.089 15 H 0.054 0.946 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.081 4.081 20 H 0.064 0.936 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.101 4.101 24 H 0.221 0.779 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.244 0.756 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 -12.114 -7.259 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.317 5.317 5 C -0.380 4.380 6 H 0.094 0.906 7 C -0.246 4.246 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.229 1.229 13 C 0.028 3.972 14 C -0.110 4.110 15 H 0.072 0.928 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.144 4.144 19 C -0.100 4.100 20 H 0.082 0.918 21 C -0.154 4.154 22 C -0.208 4.208 23 C -0.139 4.139 24 H 0.238 0.762 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.501 -11.994 -7.197 16.909 hybrid contribution -0.381 1.075 1.066 1.561 sum 9.120 -10.919 -6.131 15.492 Atomic orbital electron populations 1.25003 0.96394 1.04398 1.05779 1.24804 0.96295 0.96909 0.95625 1.17645 0.82690 0.94846 0.90204 1.44215 1.74783 1.02511 1.10217 1.19459 1.23606 1.01036 0.93875 0.90579 1.25508 0.97171 1.00963 1.00955 1.70306 1.21337 1.17803 1.46737 0.85460 0.78702 0.78882 0.78949 1.19238 1.22049 1.22877 1.20963 0.95021 0.83764 0.97493 1.21529 0.95653 0.96154 0.97673 0.92792 1.21474 0.94416 1.01036 0.97279 1.21526 0.96343 0.97195 1.00215 1.21580 0.99034 0.95481 0.98281 1.21116 0.94326 0.96752 0.97778 0.91785 1.21538 0.98194 0.95253 1.00407 1.21805 0.97020 1.01504 1.00516 1.21535 0.97129 0.95009 1.00250 0.76217 0.91753 0.92224 0.94676 0.94562 0.94715 0.93861 0.92958 0.92648 0.92320 0.90913 0.92398 0.92063 0.92003 0.92250 0.92874 0.92355 0.92121 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.67 19.25 74.32 1.43 -12.23 16 2 C -0.13 -6.64 11.55 31.12 0.36 -6.28 16 3 C 0.27 13.12 5.41 84.57 0.46 13.58 16 4 N -0.60 -28.93 2.37 -712.55 -1.69 -30.62 16 5 C -0.25 -13.24 8.04 84.03 0.68 -12.57 16 6 H 0.08 3.97 6.99 -2.91 -0.02 3.95 16 7 C -0.05 -2.76 4.81 84.86 0.41 -2.36 16 8 N -0.92 -53.39 9.62 21.65 0.21 -53.18 16 9 Si 0.95 44.91 29.61 68.60 2.03 46.94 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 13 C 0.15 6.17 5.18 86.38 0.45 6.62 16 14 C -0.09 -2.94 2.40 -10.79 -0.03 -2.97 16 15 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 16 C -0.10 -3.50 4.43 30.60 0.14 -3.37 16 17 C -0.12 -3.08 5.92 30.60 0.18 -2.90 16 18 C -0.11 -2.34 4.96 30.59 0.15 -2.19 16 19 C -0.08 -1.77 2.19 -10.81 -0.02 -1.80 16 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 21 C -0.12 -2.09 5.40 30.59 0.17 -1.93 16 22 C -0.15 -2.32 9.67 71.98 0.70 -1.63 16 23 C -0.10 -2.64 4.48 30.58 0.14 -2.50 16 24 H 0.22 8.23 7.80 -4.42 -0.03 8.20 16 25 H 0.06 3.44 6.53 -2.38 -0.02 3.42 16 26 H 0.06 2.51 8.12 -2.38 -0.02 2.49 16 27 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 29 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 2.11 6.13 -2.39 -0.01 2.10 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.37 6.57 -2.39 -0.02 1.35 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.06 0.87 6.57 -2.39 -0.02 0.85 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -60.33 327.41 6.69 -53.63 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.94 Total: 15.74 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 5.20 Total: -32.51 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.48 Total: -83.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -60.33 6.69 -53.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462625272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.403 kcal (2) G-P(sol) polarization free energy of solvation -60.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds