Wall clock time and date at job start Thu Apr 9 2020 12:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99711 * 2 1 4 4 C 1.53000 * 109.47300 * 66.04348 * 3 2 1 5 5 H 1.08999 * 109.47108 * 305.00085 * 4 3 2 6 6 C 1.47199 * 109.46832 * 65.00032 * 4 3 2 7 7 N 3.66496 * 112.02559 * 75.45473 * 2 1 3 8 8 C 1.53000 * 109.47229 * 184.99967 * 4 3 2 9 9 C 1.50700 * 109.47055 * 175.00410 * 8 4 3 10 10 H 1.07998 * 119.99863 * 359.97438 * 9 8 4 11 11 C 1.37878 * 119.99992 * 180.02562 * 9 8 4 12 12 N 1.31512 * 120.00092 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46826 * 60.00219 * 13 11 9 15 15 H 1.48502 * 109.46858 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47243 * 299.99966 * 13 11 9 17 17 C 1.46897 * 110.99994 * 236.05015 * 2 1 3 18 18 H 1.09004 * 115.49584 * 153.56873 * 17 2 1 19 19 C 1.53000 * 117.44912 * 8.17432 * 17 2 1 20 20 H 1.09007 * 119.51777 * 4.09875 * 19 17 2 21 21 C 1.54369 * 118.89202 * 161.12098 * 19 17 2 22 22 N 1.48565 * 104.59519 * 87.25344 * 21 19 17 23 23 C 1.48558 * 104.22033 * 320.51724 * 22 21 19 24 24 C 1.53004 * 117.44056 * 298.94661 * 17 2 1 25 25 H 1.09002 * 119.52590 * 355.91379 * 24 17 2 26 26 H 1.09004 * 109.46992 * 183.95735 * 1 2 3 27 27 H 1.09002 * 109.47665 * 303.95145 * 1 2 3 28 28 H 1.09004 * 109.47353 * 63.95809 * 1 2 3 29 29 H 1.08997 * 109.47402 * 186.04655 * 3 2 1 30 30 H 1.09009 * 109.47256 * 306.04730 * 3 2 1 31 31 H 1.08997 * 109.47233 * 295.00391 * 8 4 3 32 32 H 1.09002 * 109.47228 * 55.00290 * 8 4 3 33 33 H 0.97000 * 120.00325 * 180.02562 * 12 11 9 34 34 H 1.09001 * 110.41289 * 206.03627 * 21 19 17 35 35 H 1.08998 * 110.41294 * 328.35923 * 21 19 17 36 36 H 1.00897 * 110.99523 * 80.07472 * 22 21 19 37 37 H 1.08996 * 110.41314 * 280.70421 * 23 22 21 38 38 H 1.08997 * 110.41018 * 158.25697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 1 0.5530 2.0058 1.4690 6 6 2.3154 1.3778 2.4303 7 7 2.8434 0.8533 3.2886 8 6 2.0697 3.5225 1.2688 9 6 1.6029 4.2289 2.5155 10 1 1.0485 3.6871 3.2675 11 6 1.8825 5.5669 2.6954 12 7 2.5563 6.2269 1.7789 13 14 1.3032 6.4427 4.2404 14 1 1.8986 5.7882 5.4330 15 1 1.7289 7.8646 4.1925 16 1 -0.1777 6.3713 4.3241 17 6 1.9954 -0.7659 -1.1376 18 1 2.9861 -0.4709 -1.4837 19 6 0.9935 -1.2424 -2.1911 20 1 -0.0532 -0.9493 -2.1083 21 6 1.5145 -1.6476 -3.5866 22 7 1.8706 -3.0836 -3.4508 23 6 2.4891 -3.1804 -2.1036 24 6 1.6345 -2.2507 -1.2154 25 1 1.0652 -2.7083 -0.4064 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5739 0.8524 28 1 -0.3634 0.4512 -0.9233 29 1 3.0796 1.3445 -0.1082 30 1 1.5609 1.9274 -0.8310 31 1 3.1567 3.5746 1.2072 32 1 1.6328 4.0033 0.3936 33 1 2.7534 7.1682 1.9057 34 1 0.7337 -1.5188 -4.3361 35 1 2.3936 -1.0594 -3.8497 36 1 1.0500 -3.6671 -3.5147 37 1 3.5220 -2.8334 -2.1337 38 1 2.4420 -4.2056 -1.7364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578436872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:05 Heat of formation + Delta-G solvation = 62.824972 kcal Electronic energy + Delta-G solvation = -17836.553819 eV Core-core repulsion = 15100.860856 eV Total energy + Delta-G solvation = -2735.692963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33975 -37.53129 -35.52291 -33.68573 -32.35059 -30.76587 -28.56330 -27.45730 -26.02347 -23.57306 -22.10809 -21.67184 -20.32437 -19.97710 -17.30313 -16.66303 -16.48707 -15.79356 -14.87013 -14.62892 -14.50898 -14.01284 -13.99471 -13.20217 -12.86956 -12.62164 -12.37639 -12.25774 -12.16460 -11.93541 -11.71019 -11.50168 -11.35101 -11.31420 -11.08724 -10.75352 -10.60876 -10.52123 -10.18193 -9.99202 -9.56359 -9.26809 -9.03245 -8.47064 -8.13024 -6.11263 -4.14708 3.29887 3.34358 3.35356 3.38514 3.67620 3.79633 3.84045 4.08434 4.39700 4.45938 4.66109 4.85998 4.91514 4.93390 5.01988 5.21720 5.26832 5.33443 5.38852 5.46760 5.60170 5.65254 5.70829 5.72964 5.82960 5.94590 5.99194 6.00352 6.33286 6.33764 6.45965 7.02027 7.05305 7.08537 7.39699 7.50146 7.83521 8.20904 8.56798 8.89649 9.50861 10.99593 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.043196 B = 0.004192 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.057778 B = 6678.496977 C = 6921.028416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.513 5.513 3 C 0.063 3.937 4 C 0.010 3.990 5 H 0.100 0.900 6 C 0.255 3.745 7 N -0.478 5.478 8 C 0.032 3.968 9 C -0.528 4.528 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.075 3.925 18 H 0.117 0.883 19 C -0.235 4.235 20 H 0.116 0.884 21 C 0.070 3.930 22 N -0.667 5.667 23 C 0.069 3.931 24 C -0.189 4.189 25 H 0.111 0.889 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.336 0.664 37 H 0.082 0.918 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -14.179 -11.256 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.233 5.233 3 C -0.065 4.065 4 C -0.012 4.012 5 H 0.118 0.882 6 C -0.062 4.062 7 N -0.155 5.155 8 C -0.007 4.007 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.036 4.036 18 H 0.134 0.866 19 C -0.257 4.257 20 H 0.134 0.866 21 C -0.060 4.060 22 N -0.293 5.293 23 C -0.060 4.060 24 C -0.210 4.210 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.950 -15.036 -9.995 18.295 hybrid contribution -1.710 1.292 0.576 2.219 sum -4.660 -13.745 -9.419 17.302 Atomic orbital electron populations 1.22565 0.87293 1.01901 1.01437 1.61844 1.08071 1.14532 1.38870 1.22298 1.00911 0.86379 0.96894 1.19269 0.99219 0.96840 0.85870 0.88195 1.28840 0.92802 0.91023 0.93567 1.80985 1.10547 1.12336 1.11589 1.19169 0.97778 0.85202 0.98518 1.21092 1.36181 0.94847 1.04463 0.92566 1.24944 0.94895 0.97531 0.96504 1.69924 1.39362 1.09694 1.34020 0.86653 0.79238 0.78571 0.83622 1.20193 1.21161 1.20058 1.22734 0.97617 0.93133 0.90074 0.86555 1.24952 1.00845 1.07336 0.92599 0.86616 1.22524 1.00248 0.89015 0.94206 1.63538 1.30778 1.06379 1.28560 1.22539 0.98526 0.98653 0.86323 1.24379 1.03990 0.91247 1.01393 0.87102 0.91850 0.90357 0.94650 0.90022 0.92421 0.95502 0.94431 0.92708 0.90596 0.90058 0.84901 0.89958 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.08 60.06 0.49 0.67 16 2 N -0.51 -6.88 4.67 -234.88 -1.10 -7.97 16 3 C 0.06 0.94 4.29 -3.82 -0.02 0.92 16 4 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 5 H 0.10 1.72 6.26 -51.93 -0.33 1.39 16 6 C 0.25 5.35 13.67 -20.76 -0.28 5.07 16 7 N -0.48 -10.95 18.54 42.15 0.78 -10.16 16 8 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 9 C -0.53 -13.99 8.60 -34.44 -0.30 -14.28 16 10 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.07 0.87 5.71 -67.71 -0.39 0.48 16 18 H 0.12 1.34 7.93 -51.93 -0.41 0.92 16 19 C -0.24 -2.28 5.93 -89.24 -0.53 -2.81 16 20 H 0.12 1.11 6.10 -51.93 -0.32 0.80 16 21 C 0.07 0.62 7.29 -2.18 -0.02 0.60 16 22 N -0.67 -5.91 7.62 -109.66 -0.84 -6.75 16 23 C 0.07 0.63 7.29 -2.18 -0.02 0.61 16 24 C -0.19 -1.94 6.46 -89.23 -0.58 -2.51 16 25 H 0.11 1.20 7.80 -51.93 -0.41 0.80 16 26 H 0.06 0.68 7.14 -51.93 -0.37 0.31 16 27 H 0.08 0.96 6.21 -51.93 -0.32 0.64 16 28 H 0.04 0.38 6.90 -51.93 -0.36 0.02 16 29 H 0.08 1.22 7.96 -51.93 -0.41 0.80 16 30 H 0.06 0.79 8.12 -51.92 -0.42 0.37 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.34 2.53 8.92 -39.29 -0.35 2.18 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -29.78 312.42 -8.55 -38.33 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.77 Total: -0.68 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.06 Total: -9.02 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.42 Total: -49.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.78 -8.55 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578436872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.155 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds