Wall clock time and date at job start Thu Apr 9 2020 12:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99711 * 2 1 4 4 C 1.53000 * 109.47300 * 66.04348 * 3 2 1 5 5 H 1.08999 * 109.47108 * 305.00085 * 4 3 2 6 6 C 1.47199 * 109.46832 * 65.00032 * 4 3 2 7 7 N 3.66496 * 112.02559 * 75.45473 * 2 1 3 8 8 C 1.53000 * 109.47229 * 184.99967 * 4 3 2 9 9 C 1.50700 * 109.47055 * 175.00410 * 8 4 3 10 10 H 1.07998 * 119.99863 * 359.97438 * 9 8 4 11 11 C 1.37878 * 119.99992 * 180.02562 * 9 8 4 12 12 N 1.31512 * 120.00092 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46826 * 60.00219 * 13 11 9 15 15 H 1.48502 * 109.46858 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47243 * 299.99966 * 13 11 9 17 17 C 1.46897 * 110.99994 * 236.05015 * 2 1 3 18 18 H 1.09004 * 115.49584 * 153.56873 * 17 2 1 19 19 C 1.53000 * 117.44912 * 8.17432 * 17 2 1 20 20 H 1.09007 * 119.51777 * 4.09875 * 19 17 2 21 21 C 1.54369 * 118.89202 * 161.12098 * 19 17 2 22 22 N 1.48565 * 104.59519 * 87.25344 * 21 19 17 23 23 C 1.48558 * 104.22033 * 320.51724 * 22 21 19 24 24 C 1.53004 * 117.44056 * 298.94661 * 17 2 1 25 25 H 1.09002 * 119.52590 * 355.91379 * 24 17 2 26 26 H 1.09004 * 109.46992 * 183.95735 * 1 2 3 27 27 H 1.09002 * 109.47665 * 303.95145 * 1 2 3 28 28 H 1.09004 * 109.47353 * 63.95809 * 1 2 3 29 29 H 1.08997 * 109.47402 * 186.04655 * 3 2 1 30 30 H 1.09009 * 109.47256 * 306.04730 * 3 2 1 31 31 H 1.08997 * 109.47233 * 295.00391 * 8 4 3 32 32 H 1.09002 * 109.47228 * 55.00290 * 8 4 3 33 33 H 0.97000 * 120.00325 * 180.02562 * 12 11 9 34 34 H 1.09001 * 110.41289 * 206.03627 * 21 19 17 35 35 H 1.08998 * 110.41294 * 328.35923 * 21 19 17 36 36 H 1.00897 * 110.99523 * 80.07472 * 22 21 19 37 37 H 1.08996 * 110.41314 * 280.70421 * 23 22 21 38 38 H 1.08997 * 110.41018 * 158.25697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 1 0.5530 2.0058 1.4690 6 6 2.3154 1.3778 2.4303 7 7 2.8434 0.8533 3.2886 8 6 2.0697 3.5225 1.2688 9 6 1.6029 4.2289 2.5155 10 1 1.0485 3.6871 3.2675 11 6 1.8825 5.5669 2.6954 12 7 2.5563 6.2269 1.7789 13 14 1.3032 6.4427 4.2404 14 1 1.8986 5.7882 5.4330 15 1 1.7289 7.8646 4.1925 16 1 -0.1777 6.3713 4.3241 17 6 1.9954 -0.7659 -1.1376 18 1 2.9861 -0.4709 -1.4837 19 6 0.9935 -1.2424 -2.1911 20 1 -0.0532 -0.9493 -2.1083 21 6 1.5145 -1.6476 -3.5866 22 7 1.8706 -3.0836 -3.4508 23 6 2.4891 -3.1804 -2.1036 24 6 1.6345 -2.2507 -1.2154 25 1 1.0652 -2.7083 -0.4064 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5739 0.8524 28 1 -0.3634 0.4512 -0.9233 29 1 3.0796 1.3445 -0.1082 30 1 1.5609 1.9274 -0.8310 31 1 3.1567 3.5746 1.2072 32 1 1.6328 4.0033 0.3936 33 1 2.7534 7.1682 1.9057 34 1 0.7337 -1.5188 -4.3361 35 1 2.3936 -1.0594 -3.8497 36 1 1.0500 -3.6671 -3.5147 37 1 3.5220 -2.8334 -2.1337 38 1 2.4420 -4.2056 -1.7364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578436872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:04 Heat of formation + Delta-G solvation = 42.582561 kcal Electronic energy + Delta-G solvation = -17837.431596 eV Core-core repulsion = 15100.860856 eV Total energy + Delta-G solvation = -2736.570740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17105 -38.83347 -36.89842 -35.48792 -33.84547 -32.00598 -29.28761 -28.82772 -27.39730 -24.81258 -23.58092 -22.91959 -21.15817 -20.80279 -18.53475 -18.41268 -17.77942 -16.88300 -16.41988 -15.88632 -15.69288 -15.12223 -14.73356 -14.61846 -14.40944 -14.13077 -13.77888 -13.49318 -13.26649 -13.06044 -12.98975 -12.87615 -12.66826 -12.58922 -12.46722 -12.38340 -12.18809 -11.79038 -11.50745 -11.41178 -11.17386 -10.71665 -10.55269 -9.75500 -9.09030 -8.19865 -6.28389 1.40830 1.42837 1.49694 2.03139 2.11126 2.40453 2.51055 2.86108 3.15435 3.30322 3.39500 3.66367 3.86858 4.10111 4.16063 4.16228 4.23061 4.27735 4.35563 4.59103 4.65883 4.74064 4.76671 4.78922 4.93257 4.97862 4.99605 5.04708 5.12652 5.22985 5.45219 5.59869 5.63993 5.77952 6.02043 6.08063 6.20586 6.42896 6.81610 6.90915 7.40275 8.90863 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.043196 B = 0.004192 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.057778 B = 6678.496977 C = 6921.028416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.526 5.526 3 C 0.075 3.925 4 C 0.021 3.979 5 H 0.118 0.882 6 C 0.265 3.735 7 N -0.513 5.513 8 C 0.039 3.961 9 C -0.541 4.541 10 H 0.054 0.946 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.948 3.052 14 H -0.281 1.281 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.057 3.943 18 H 0.113 0.887 19 C -0.218 4.218 20 H 0.122 0.878 21 C 0.071 3.929 22 N -0.671 5.671 23 C 0.072 3.928 24 C -0.187 4.187 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.002 0.998 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.345 0.655 37 H 0.075 0.925 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 -14.970 -11.987 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.054 4.054 4 C -0.001 4.001 5 H 0.135 0.865 6 C -0.051 4.051 7 N -0.191 5.191 8 C 0.000 4.000 9 C -0.579 4.579 10 H 0.072 0.928 11 C -0.186 4.186 12 N -0.562 5.562 13 Si 0.773 3.227 14 H -0.207 1.207 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.053 4.053 18 H 0.131 0.869 19 C -0.240 4.240 20 H 0.140 0.860 21 C -0.059 4.059 22 N -0.297 5.297 23 C -0.058 4.058 24 C -0.208 4.208 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.209 -15.847 -10.735 19.598 hybrid contribution -1.314 1.496 0.776 2.137 sum -5.523 -14.351 -9.960 18.321 Atomic orbital electron populations 1.22600 0.86268 1.02577 1.01744 1.61780 1.09128 1.13464 1.40378 1.22085 1.00862 0.87501 0.94944 1.19221 0.99741 0.94161 0.86935 0.86477 1.29347 0.92056 0.90356 0.93334 1.80980 1.11733 1.13577 1.12793 1.18986 0.96020 0.87910 0.97110 1.21511 1.35682 0.95235 1.05503 0.92824 1.25696 0.95210 0.98509 0.99174 1.70019 1.40588 1.09971 1.35666 0.85763 0.79402 0.77537 0.79968 1.20733 1.20680 1.18691 1.22739 0.98084 0.93890 0.90613 0.86934 1.24943 1.00489 1.05871 0.92693 0.86046 1.22552 1.00494 0.88869 0.93988 1.63510 1.31381 1.06565 1.28222 1.22529 0.97971 0.99025 0.86287 1.24389 1.04114 0.90772 1.01546 0.87573 0.90860 0.91109 0.93350 0.90521 0.90932 0.98004 0.94553 0.92663 0.89076 0.90609 0.83881 0.90661 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.08 127.69 1.03 1.36 16 2 N -0.53 -13.36 4.67 -897.02 -4.19 -17.55 16 3 C 0.07 2.12 4.29 86.30 0.37 2.50 16 4 C 0.02 0.76 2.14 -12.60 -0.03 0.73 16 5 H 0.12 3.85 6.26 -2.39 -0.01 3.84 16 6 C 0.27 11.08 13.67 89.44 1.22 12.30 16 7 N -0.51 -23.52 18.54 20.01 0.37 -23.15 16 8 C 0.04 1.77 4.42 29.85 0.13 1.90 16 9 C -0.54 -28.60 8.60 25.60 0.22 -28.38 16 10 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 11 C 0.01 0.72 5.46 84.66 0.46 1.19 16 12 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 13 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 C 0.06 1.23 5.71 44.92 0.26 1.49 16 18 H 0.11 2.49 7.93 -2.39 -0.02 2.47 16 19 C -0.22 -3.72 5.93 -9.90 -0.06 -3.78 16 20 H 0.12 1.97 6.10 -2.38 -0.01 1.96 16 21 C 0.07 1.08 7.29 86.45 0.63 1.71 16 22 N -0.67 -10.41 7.62 -500.87 -3.82 -14.23 16 23 C 0.07 1.18 7.29 86.45 0.63 1.81 16 24 C -0.19 -3.51 6.46 -9.90 -0.06 -3.57 16 25 H 0.11 2.12 7.80 -2.39 -0.02 2.10 16 26 H 0.07 1.41 7.14 -2.38 -0.02 1.40 16 27 H 0.07 1.61 6.21 -2.39 -0.01 1.59 16 28 H 0.05 0.90 6.90 -2.39 -0.02 0.89 16 29 H 0.08 2.25 7.96 -2.39 -0.02 2.23 16 30 H 0.07 1.86 8.12 -2.38 -0.02 1.84 16 31 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.34 4.34 8.92 -89.70 -0.80 3.54 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -62.50 312.42 -0.26 -62.76 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.26 Total: 10.15 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.81 Total: -10.75 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -7.35 Total: -107.41 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.50 -0.26 -62.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578436872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.342 kcal (2) G-P(sol) polarization free energy of solvation -62.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds