Wall clock time and date at job start Thu Apr 9 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99805 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99952 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.38391 * 119.92041 * 269.72395 * 13 12 10 15 15 C 1.38354 * 120.30045 * 179.72573 * 14 13 12 16 16 C 1.37964 * 120.14805 * 0.55148 * 15 14 13 17 17 C 1.39606 * 119.84758 * 359.72445 * 16 15 14 18 18 C 1.47729 * 120.15120 * 180.02562 * 17 16 15 19 19 O 1.21461 * 120.00446 * 179.97438 * 18 17 16 20 20 O 1.34718 * 119.99686 * 359.97438 * 18 17 16 21 21 C 1.37915 * 119.92645 * 90.00342 * 13 12 10 22 22 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47646 * 300.00339 * 12 10 9 24 24 H 1.08995 * 109.47329 * 60.00560 * 12 10 9 25 25 H 1.07996 * 119.85143 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.92153 * 180.25805 * 15 14 13 27 27 H 1.07997 * 120.07500 * 179.74758 * 16 15 14 28 28 H 0.96693 * 116.99620 * 179.97438 * 20 18 17 29 29 H 1.07999 * 120.07754 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.8904 -6.4368 -1.1976 15 6 3.8474 -7.4359 -1.2063 16 6 4.3301 -7.9435 -0.0177 17 6 3.8548 -7.4426 1.1956 18 6 4.3674 -7.9808 2.4723 19 8 3.9524 -7.5428 3.5265 20 8 5.2952 -8.9576 2.4674 21 6 2.8929 -6.4301 1.1971 22 1 -0.4850 0.8400 -0.0004 23 1 0.7586 -4.9295 0.8913 24 1 0.7581 -4.9300 -0.8886 25 1 2.5130 -6.0458 -2.1309 26 1 4.2139 -7.8226 -2.1457 27 1 5.0741 -8.7262 -0.0259 28 1 5.6004 -9.2774 3.3274 29 1 2.5213 -6.0380 2.1323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073738.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:13 Heat of formation + Delta-G solvation = -149.858098 kcal Electronic energy + Delta-G solvation = -17135.233353 eV Core-core repulsion = 13988.640158 eV Total energy + Delta-G solvation = -3146.593195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46312 -39.30827 -38.37512 -36.15977 -35.23579 -32.76313 -32.11875 -31.22274 -27.94497 -25.14308 -24.77417 -22.14968 -21.22243 -19.92383 -17.97017 -17.72441 -17.22187 -16.53476 -15.97195 -15.66789 -15.42035 -14.63862 -14.49277 -14.31943 -14.11056 -13.40637 -13.00843 -12.70950 -12.14247 -12.01109 -11.67755 -11.60571 -11.54584 -11.15908 -11.05127 -10.63858 -10.39837 -10.36788 -9.80161 -9.12677 -9.00558 -8.70330 -8.57781 -6.40803 -4.08594 0.71796 1.37051 2.52977 2.92009 3.10214 3.19814 3.27345 3.52836 3.71882 4.02649 4.63109 4.79497 4.87895 4.96200 5.11938 5.15435 5.33822 5.40273 5.70037 5.80241 5.95280 6.00298 6.23863 6.34220 6.37987 6.60909 6.71432 6.91319 7.40760 7.80647 7.95918 8.71957 9.08350 9.85405 10.77288 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.034210 B = 0.004647 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.275827 B = 6024.283379 C = 6325.575809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.096 0.904 9 O -0.215 6.215 10 C 0.398 3.602 11 O -0.549 6.549 12 C -0.070 4.070 13 C -0.066 4.066 14 C -0.065 4.065 15 C -0.135 4.135 16 C -0.067 4.067 17 C -0.133 4.133 18 C 0.529 3.471 19 O -0.513 6.513 20 O -0.514 6.514 21 C -0.037 4.037 22 H 0.269 0.731 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.412 0.588 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -16.037 -0.627 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.113 0.887 9 O -0.122 6.122 10 C 0.244 3.756 11 O -0.446 6.446 12 C -0.107 4.107 13 C -0.066 4.066 14 C -0.083 4.083 15 C -0.152 4.152 16 C -0.085 4.085 17 C -0.134 4.134 18 C 0.374 3.626 19 O -0.403 6.403 20 O -0.326 6.326 21 C -0.055 4.055 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.270 0.730 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.202 -15.582 -0.718 16.443 hybrid contribution 0.634 0.659 0.599 1.093 sum 5.837 -14.924 -0.119 16.025 Atomic orbital electron populations 1.69997 1.05978 1.27559 1.46775 1.25330 0.95815 0.98841 0.96254 0.85627 0.79483 0.80118 0.78113 1.18971 1.20178 1.20166 1.21271 0.92389 0.79803 1.52254 0.88654 1.83873 1.39352 1.13341 1.75681 1.22942 0.86716 0.86943 0.78985 1.90583 1.15589 1.88022 1.50433 1.20112 0.96411 0.88365 1.05859 1.19373 0.98141 0.96265 0.92805 1.21367 0.94690 0.94255 0.97952 1.21083 0.98085 0.98005 0.98073 1.21363 0.97670 0.98217 0.91255 1.18915 1.02400 1.01605 0.90520 1.20957 0.75885 0.76229 0.89576 1.90894 1.57481 1.58380 1.33521 1.84556 1.55322 1.51974 1.40772 1.21127 0.93053 0.92475 0.98862 0.92140 0.87746 0.87664 0.85181 0.85136 0.84743 0.72996 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.67 55.48 0.76 -24.67 15 2 C 0.04 1.17 5.49 -17.53 -0.10 1.08 15 3 Si 0.94 21.47 29.55 -169.99 -5.02 16.45 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.38 -11.32 9.65 30.92 0.30 -11.02 15 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 15 9 O -0.22 -6.13 9.75 -20.72 -0.20 -6.33 15 10 C 0.40 9.66 7.90 36.00 0.28 9.95 15 11 O -0.55 -14.72 15.27 -19.05 -0.29 -15.01 15 12 C -0.07 -1.21 5.94 -29.04 -0.17 -1.38 15 13 C -0.07 -1.05 4.37 -104.68 -0.46 -1.51 15 14 C -0.06 -0.89 9.69 -39.48 -0.38 -1.27 15 15 C -0.13 -1.58 10.03 -39.64 -0.40 -1.98 15 16 C -0.07 -0.81 9.62 -39.17 -0.38 -1.18 15 17 C -0.13 -1.91 5.87 -104.98 -0.62 -2.53 15 18 C 0.53 7.26 8.27 34.61 0.29 7.55 15 19 O -0.51 -8.57 17.13 -19.24 -0.33 -8.90 15 20 O -0.51 -5.01 12.68 -40.54 -0.51 -5.52 15 21 C -0.04 -0.59 9.24 -39.17 -0.36 -0.95 15 22 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.10 1.62 8.08 -51.93 -0.42 1.20 15 24 H 0.11 1.56 8.08 -51.93 -0.42 1.14 15 25 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.13 1.13 8.06 -52.49 -0.42 0.71 15 27 H 0.13 1.29 7.61 -52.49 -0.40 0.89 15 28 H 0.41 2.09 9.11 45.56 0.42 2.50 15 29 H 0.14 2.23 7.65 -52.49 -0.40 1.83 15 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -36.21 277.26 -4.98 -41.20 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.57 Total: 1.86 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.99 Total: -3.25 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.34 Total: -35.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -36.21 -4.98 -41.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073738.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.662 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds