Wall clock time and date at job start Thu Apr 9 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99805 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99952 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.38391 * 119.92041 * 269.72395 * 13 12 10 15 15 C 1.38354 * 120.30045 * 179.72573 * 14 13 12 16 16 C 1.37964 * 120.14805 * 0.55148 * 15 14 13 17 17 C 1.39606 * 119.84758 * 359.72445 * 16 15 14 18 18 C 1.47729 * 120.15120 * 180.02562 * 17 16 15 19 19 O 1.21461 * 120.00446 * 179.97438 * 18 17 16 20 20 O 1.34718 * 119.99686 * 359.97438 * 18 17 16 21 21 C 1.37915 * 119.92645 * 90.00342 * 13 12 10 22 22 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47646 * 300.00339 * 12 10 9 24 24 H 1.08995 * 109.47329 * 60.00560 * 12 10 9 25 25 H 1.07996 * 119.85143 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.92153 * 180.25805 * 15 14 13 27 27 H 1.07997 * 120.07500 * 179.74758 * 16 15 14 28 28 H 0.96693 * 116.99620 * 179.97438 * 20 18 17 29 29 H 1.07999 * 120.07754 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.8904 -6.4368 -1.1976 15 6 3.8474 -7.4359 -1.2063 16 6 4.3301 -7.9435 -0.0177 17 6 3.8548 -7.4426 1.1956 18 6 4.3674 -7.9808 2.4723 19 8 3.9524 -7.5428 3.5265 20 8 5.2952 -8.9576 2.4674 21 6 2.8929 -6.4301 1.1971 22 1 -0.4850 0.8400 -0.0004 23 1 0.7586 -4.9295 0.8913 24 1 0.7581 -4.9300 -0.8886 25 1 2.5130 -6.0458 -2.1309 26 1 4.2139 -7.8226 -2.1457 27 1 5.0741 -8.7262 -0.0259 28 1 5.6004 -9.2774 3.3274 29 1 2.5213 -6.0380 2.1323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073738.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:12 Heat of formation + Delta-G solvation = -174.624396 kcal Electronic energy + Delta-G solvation = -17136.307301 eV Core-core repulsion = 13988.640158 eV Total energy + Delta-G solvation = -3147.667142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56667 -41.02332 -39.69997 -37.25066 -37.13848 -34.33769 -34.00929 -32.27181 -29.38485 -27.19208 -25.82063 -23.45314 -22.38324 -21.46995 -19.88007 -18.98756 -18.53503 -18.27521 -17.01866 -16.92590 -16.72750 -16.52080 -16.22888 -15.90338 -15.31190 -14.49388 -14.39782 -14.09620 -13.67489 -13.52224 -13.39989 -12.91803 -12.67581 -12.63848 -12.34160 -12.23263 -12.11607 -11.96777 -11.72268 -11.08724 -10.70319 -10.06620 -9.87148 -8.54631 -6.34306 -0.34823 0.27993 1.29364 1.33479 1.46515 1.52290 1.64611 1.98764 2.12712 2.59920 2.96470 3.06345 3.55553 3.84869 3.98888 4.09125 4.24027 4.30406 4.58386 4.64440 4.69621 4.84888 4.98288 5.18876 5.21532 5.35876 5.46903 5.53192 5.82660 5.85026 6.67663 6.90957 6.91930 7.76808 8.66250 Molecular weight = 250.07amu Principal moments of inertia in cm(-1) A = 0.034210 B = 0.004647 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.275827 B = 6024.283379 C = 6325.575809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.398 3.602 11 O -0.578 6.578 12 C -0.059 4.059 13 C -0.090 4.090 14 C -0.071 4.071 15 C -0.126 4.126 16 C -0.054 4.054 17 C -0.150 4.150 18 C 0.535 3.465 19 O -0.554 6.554 20 O -0.497 6.497 21 C -0.059 4.059 22 H 0.279 0.721 23 H 0.118 0.882 24 H 0.134 0.866 25 H 0.146 0.854 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.434 0.566 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -17.069 -1.780 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.204 4.204 3 Si 0.835 3.165 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.246 3.754 11 O -0.475 6.475 12 C -0.096 4.096 13 C -0.090 4.090 14 C -0.089 4.089 15 C -0.143 4.143 16 C -0.071 4.071 17 C -0.151 4.151 18 C 0.381 3.619 19 O -0.446 6.446 20 O -0.311 6.311 21 C -0.078 4.078 22 H 0.088 0.912 23 H 0.136 0.864 24 H 0.152 0.848 25 H 0.164 0.836 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.296 0.704 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.344 -16.664 -1.869 17.928 hybrid contribution 0.361 0.785 0.945 1.281 sum 6.704 -15.879 -0.924 17.261 Atomic orbital electron populations 1.70072 1.07558 1.29284 1.47103 1.26506 0.96889 1.02273 0.94781 0.84596 0.77720 0.74920 0.79295 1.19060 1.18185 1.18560 1.21416 0.92047 0.81262 1.54814 0.90294 1.83899 1.40334 1.14199 1.77004 1.24313 0.86731 0.88086 0.76309 1.90542 1.17179 1.88616 1.51182 1.20210 0.96940 0.84598 1.07855 1.19336 0.99058 0.96702 0.93868 1.21680 0.94952 0.94631 0.97601 1.21539 0.96561 0.96587 0.99630 1.21758 0.97166 0.97944 0.90269 1.19096 1.02446 1.01641 0.91949 1.20901 0.75866 0.76301 0.88809 1.90881 1.59062 1.59917 1.34757 1.84490 1.53746 1.50336 1.42544 1.21107 0.94448 0.93898 0.98317 0.91196 0.86376 0.84801 0.83614 0.81177 0.81614 0.70428 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.65 13.67 21.62 0.30 -53.35 15 2 C 0.00 -0.25 5.49 84.87 0.47 0.21 15 3 Si 1.02 44.02 29.55 68.60 2.03 46.05 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 15 7 C -0.42 -25.78 9.65 67.94 0.66 -25.13 15 8 H 0.08 4.96 6.86 -2.91 -0.02 4.94 15 9 O -0.25 -14.51 9.75 14.81 0.14 -14.37 15 10 C 0.40 19.88 7.90 71.23 0.56 20.44 15 11 O -0.58 -31.91 15.27 20.78 0.32 -31.59 15 12 C -0.06 -2.05 5.94 29.10 0.17 -1.88 15 13 C -0.09 -2.83 4.37 -19.90 -0.09 -2.92 15 14 C -0.07 -1.80 9.69 22.33 0.22 -1.59 15 15 C -0.13 -2.50 10.03 22.23 0.22 -2.28 15 16 C -0.05 -1.12 9.62 22.53 0.22 -0.90 15 17 C -0.15 -4.15 5.87 -20.10 -0.12 -4.27 15 18 C 0.54 14.23 8.27 70.33 0.58 14.81 15 19 O -0.55 -18.75 17.13 19.96 0.34 -18.41 15 20 O -0.50 -8.42 12.68 -56.27 -0.71 -9.14 15 21 C -0.06 -1.93 9.24 22.54 0.21 -1.72 15 22 H 0.28 14.96 8.31 -92.71 -0.77 14.19 15 23 H 0.12 3.75 8.08 -2.39 -0.02 3.73 15 24 H 0.13 3.84 8.08 -2.39 -0.02 3.82 15 25 H 0.15 3.17 8.06 -2.91 -0.02 3.14 15 26 H 0.17 2.05 8.06 -2.91 -0.02 2.02 15 27 H 0.17 2.41 7.61 -2.91 -0.02 2.39 15 28 H 0.43 3.29 9.11 -74.06 -0.67 2.61 15 29 H 0.12 4.13 7.65 -2.91 -0.02 4.11 15 Total: -1.00 -81.37 277.26 6.04 -75.33 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.53 Total: 10.68 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 3.10 Total: -5.21 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.30 Total: -53.35 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: 0.09 Total: -73.50 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -81.37 6.04 -75.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073738.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.290 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds