Wall clock time and date at job start Thu Apr 9 2020 12:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 C 1.50698 * 109.47019 * 240.00517 * 2 1 3 5 5 H 1.07997 * 119.99869 * 239.99260 * 4 2 1 6 6 C 1.37879 * 120.00052 * 59.99526 * 4 2 1 7 7 N 1.31515 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47155 * 89.99869 * 8 6 4 10 10 H 1.48497 * 109.47221 * 210.00269 * 8 6 4 11 11 H 1.48501 * 109.47179 * 330.00185 * 8 6 4 12 12 N 1.46893 * 109.47511 * 120.00003 * 2 1 3 13 13 C 1.46892 * 111.00396 * 299.31529 * 12 2 1 14 14 C 1.39674 * 110.99933 * 175.35968 * 12 2 1 15 15 C 1.38927 * 120.07576 * 59.61786 * 14 12 2 16 16 C 1.38088 * 119.92646 * 179.97438 * 15 14 12 17 17 C 1.38300 * 120.07257 * 0.02562 * 16 15 14 18 18 C 1.38259 * 120.15376 * 359.97438 * 17 16 15 19 19 C 1.38125 * 120.07438 * 0.29599 * 18 17 16 20 20 N 1.48009 * 120.04060 * 179.72739 * 19 18 17 21 21 O 1.21793 * 119.99763 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00052 * 180.02562 * 20 19 18 23 23 H 1.08998 * 109.47289 * 185.97088 * 1 2 3 24 24 H 1.08997 * 109.47395 * 305.96339 * 1 2 3 25 25 H 1.09006 * 109.47949 * 65.96713 * 1 2 3 26 26 H 0.97002 * 119.99604 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47478 * 296.04512 * 13 12 2 28 28 H 1.09001 * 109.47430 * 56.04359 * 13 12 2 29 29 H 1.08995 * 109.47488 * 176.04649 * 13 12 2 30 30 H 1.08003 * 120.03661 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.96017 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.92361 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.96446 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5883 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4863 -0.1411 -5.1123 11 1 3.6291 -1.7581 -3.7124 12 7 2.0197 -0.6924 1.1993 13 6 1.5622 -0.0170 2.4209 14 6 3.4119 -0.8031 1.1800 15 6 4.2005 0.3395 1.1280 16 6 5.5766 0.2265 1.1095 17 6 6.1699 -1.0223 1.1422 18 6 5.3882 -2.1615 1.1940 19 6 4.0110 -2.0559 1.2071 20 7 3.1748 -3.2761 1.2564 21 8 3.7010 -4.3742 1.2851 22 8 1.9605 -3.1822 1.2675 23 1 -0.3634 -1.0221 0.1069 24 1 -0.3634 0.6035 0.8317 25 1 -0.3635 0.4185 -0.9386 26 1 0.7092 1.1620 -3.4844 27 1 1.9929 0.9832 2.4662 28 1 0.4747 0.0559 2.4103 29 1 1.8795 -0.5889 3.2929 30 1 3.7377 1.3150 1.1020 31 1 6.1902 1.1145 1.0695 32 1 7.2464 -1.1078 1.1281 33 1 5.8548 -3.1352 1.2198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:43 Heat of formation + Delta-G solvation = 43.203926 kcal Electronic energy + Delta-G solvation = -19073.901330 eV Core-core repulsion = 16103.805778 eV Total energy + Delta-G solvation = -2970.095552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38738 -39.44348 -36.69973 -35.54700 -33.03299 -31.51037 -30.31837 -28.64966 -26.29036 -25.35965 -24.43216 -22.49227 -21.50438 -19.71350 -18.52993 -17.77949 -16.82561 -16.67348 -15.98166 -15.10800 -15.03269 -14.47769 -14.07484 -13.90115 -13.25176 -12.58964 -12.30122 -12.16799 -11.98568 -11.53915 -11.11608 -10.82781 -10.77644 -10.71188 -10.45465 -10.41544 -10.27186 -10.22738 -10.06249 -9.17957 -9.09402 -8.64271 -8.49673 -7.58830 -6.13883 -4.18846 0.52126 1.34334 2.04336 2.24188 3.24843 3.31275 3.35341 3.70637 4.26451 4.44232 4.83188 4.99718 5.17178 5.19015 5.33510 5.47358 5.73083 5.83466 5.86234 6.09059 6.26201 6.30316 6.40687 6.64526 6.72352 6.90465 6.95850 7.15548 7.27713 7.56396 7.68022 8.02743 8.13317 8.33057 8.54494 8.83699 9.46365 10.91946 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.009953 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.790907 B = 2812.483987 C = 2964.414349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.221 3.779 3 H 0.006 0.994 4 C -0.504 4.504 5 H 0.053 0.947 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.505 5.505 13 C 0.032 3.968 14 C 0.216 3.784 15 C -0.148 4.148 16 C -0.065 4.065 17 C -0.142 4.142 18 C -0.060 4.060 19 C -0.036 4.036 20 N 0.033 4.967 21 O -0.231 6.231 22 O -0.082 6.082 23 H 0.043 0.957 24 H 0.011 0.989 25 H 0.091 0.909 26 H 0.263 0.737 27 H 0.021 0.979 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 0.897 8.162 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.117 3.883 3 H 0.024 0.976 4 C -0.542 4.542 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.227 5.227 13 C -0.114 4.114 14 C 0.119 3.881 15 C -0.169 4.169 16 C -0.084 4.084 17 C -0.161 4.161 18 C -0.079 4.079 19 C -0.121 4.121 20 N 0.553 4.447 21 O -0.427 6.427 22 O -0.318 6.318 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.782 1.024 7.986 11.198 hybrid contribution 0.439 0.064 -1.035 1.126 sum 8.221 1.087 6.951 10.821 Atomic orbital electron populations 1.21853 0.96570 0.99734 1.01121 1.19428 0.93160 0.91466 0.84209 0.97604 1.20974 1.31247 1.12131 0.89840 0.92893 1.24836 0.94975 0.94930 0.98899 1.69863 1.36442 1.22680 1.23707 0.86562 0.79395 0.79521 0.82452 1.20245 1.21061 1.20108 1.60130 1.03322 1.54537 1.04718 1.22372 1.02144 0.95468 0.91457 1.18587 0.91718 0.89736 0.88044 1.21777 0.94007 0.99237 1.01857 1.21360 0.94725 0.97887 0.94408 1.20977 1.00030 0.91371 1.03739 1.20881 0.90583 1.00860 0.95625 1.21159 0.90743 0.84650 1.15531 1.43335 1.01808 1.01728 0.97798 1.94437 1.76615 1.14048 1.57637 1.94625 0.95000 1.93530 1.48668 0.93796 0.97043 0.89072 0.92736 0.96068 0.89996 0.92840 0.84396 0.84969 0.84551 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.65 37.15 0.32 -2.86 16 2 C 0.22 5.32 1.75 -68.87 -0.12 5.20 16 3 H 0.01 0.16 7.27 -51.93 -0.38 -0.21 16 4 C -0.50 -13.64 8.04 -34.44 -0.28 -13.92 16 5 H 0.05 1.51 6.90 -52.49 -0.36 1.15 16 6 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 7 N -0.89 -24.50 11.29 55.43 0.63 -23.87 16 8 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.50 -10.67 2.49 -172.69 -0.43 -11.10 16 13 C 0.03 0.56 9.11 60.06 0.55 1.10 16 14 C 0.22 4.27 3.43 -83.79 -0.29 3.98 16 15 C -0.15 -2.50 8.62 -39.38 -0.34 -2.84 16 16 C -0.06 -0.88 10.04 -39.61 -0.40 -1.27 16 17 C -0.14 -1.86 10.04 -39.55 -0.40 -2.25 16 18 C -0.06 -0.95 9.55 -39.62 -0.38 -1.33 16 19 C -0.04 -0.71 6.48 -79.75 -0.52 -1.23 16 20 N 0.03 0.71 4.45 34.06 0.15 0.87 16 21 O -0.23 -4.93 18.45 -29.46 -0.54 -5.47 16 22 O -0.08 -1.91 17.10 -29.46 -0.50 -2.41 16 23 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.01 0.22 6.66 -51.93 -0.35 -0.12 16 25 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.02 0.33 7.37 -51.93 -0.38 -0.05 16 28 H 0.08 1.38 6.25 -51.93 -0.32 1.05 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.14 2.25 7.06 -52.48 -0.37 1.88 16 31 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.03 7.61 -52.48 -0.40 1.63 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -29.97 281.40 -7.12 -37.08 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.70 Total: -2.21 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.94 Total: -13.72 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.35 Total: -34.10 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -1.05 Total: -7.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.97 -7.12 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.287 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds