Wall clock time and date at job start Thu Apr 9 2020 12:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 C 1.50698 * 109.47019 * 240.00517 * 2 1 3 5 5 H 1.07997 * 119.99869 * 239.99260 * 4 2 1 6 6 C 1.37879 * 120.00052 * 59.99526 * 4 2 1 7 7 N 1.31515 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47155 * 89.99869 * 8 6 4 10 10 H 1.48497 * 109.47221 * 210.00269 * 8 6 4 11 11 H 1.48501 * 109.47179 * 330.00185 * 8 6 4 12 12 N 1.46893 * 109.47511 * 120.00003 * 2 1 3 13 13 C 1.46892 * 111.00396 * 299.31529 * 12 2 1 14 14 C 1.39674 * 110.99933 * 175.35968 * 12 2 1 15 15 C 1.38927 * 120.07576 * 59.61786 * 14 12 2 16 16 C 1.38088 * 119.92646 * 179.97438 * 15 14 12 17 17 C 1.38300 * 120.07257 * 0.02562 * 16 15 14 18 18 C 1.38259 * 120.15376 * 359.97438 * 17 16 15 19 19 C 1.38125 * 120.07438 * 0.29599 * 18 17 16 20 20 N 1.48009 * 120.04060 * 179.72739 * 19 18 17 21 21 O 1.21793 * 119.99763 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00052 * 180.02562 * 20 19 18 23 23 H 1.08998 * 109.47289 * 185.97088 * 1 2 3 24 24 H 1.08997 * 109.47395 * 305.96339 * 1 2 3 25 25 H 1.09006 * 109.47949 * 65.96713 * 1 2 3 26 26 H 0.97002 * 119.99604 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47478 * 296.04512 * 13 12 2 28 28 H 1.09001 * 109.47430 * 56.04359 * 13 12 2 29 29 H 1.08995 * 109.47488 * 176.04649 * 13 12 2 30 30 H 1.08003 * 120.03661 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.96017 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.92361 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.96446 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5883 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4863 -0.1411 -5.1123 11 1 3.6291 -1.7581 -3.7124 12 7 2.0197 -0.6924 1.1993 13 6 1.5622 -0.0170 2.4209 14 6 3.4119 -0.8031 1.1800 15 6 4.2005 0.3395 1.1280 16 6 5.5766 0.2265 1.1095 17 6 6.1699 -1.0223 1.1422 18 6 5.3882 -2.1615 1.1940 19 6 4.0110 -2.0559 1.2071 20 7 3.1748 -3.2761 1.2564 21 8 3.7010 -4.3742 1.2851 22 8 1.9605 -3.1822 1.2675 23 1 -0.3634 -1.0221 0.1069 24 1 -0.3634 0.6035 0.8317 25 1 -0.3635 0.4185 -0.9386 26 1 0.7092 1.1620 -3.4844 27 1 1.9929 0.9832 2.4662 28 1 0.4747 0.0559 2.4103 29 1 1.8795 -0.5889 3.2929 30 1 3.7377 1.3150 1.1020 31 1 6.1902 1.1145 1.0695 32 1 7.2464 -1.1078 1.1281 33 1 5.8548 -3.1352 1.2198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:43 Heat of formation + Delta-G solvation = 26.586005 kcal Electronic energy + Delta-G solvation = -19074.621937 eV Core-core repulsion = 16103.805778 eV Total energy + Delta-G solvation = -2970.816159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.96270 -40.85398 -38.18197 -37.19834 -34.96656 -32.82453 -31.87844 -30.27511 -27.92333 -27.01201 -26.11473 -23.93157 -22.93453 -21.40625 -19.99129 -19.37080 -18.63238 -18.29145 -17.58015 -16.78796 -16.40396 -15.83247 -15.74159 -15.27133 -14.97384 -14.02372 -13.88807 -13.58014 -13.32000 -13.05867 -12.80634 -12.67990 -12.54927 -12.39336 -12.31750 -12.25433 -11.96991 -11.92842 -11.88818 -11.05343 -10.61000 -10.41284 -9.87628 -9.17055 -8.19854 -6.29929 -0.94116 0.11526 0.56849 0.77131 1.30738 1.34899 1.41673 2.33038 2.46168 2.94778 3.09868 3.62427 3.91301 4.04780 4.10583 4.18651 4.41801 4.50588 4.61566 4.74672 4.87950 4.97907 5.04274 5.06765 5.15788 5.22065 5.40769 5.44373 5.58902 5.62068 5.77237 6.19787 6.32408 6.53838 6.78766 6.87914 7.37652 8.85030 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.009953 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.790907 B = 2812.483987 C = 2964.414349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.230 3.770 3 H -0.011 1.011 4 C -0.512 4.512 5 H 0.032 0.968 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.279 1.279 12 N -0.520 5.520 13 C 0.033 3.967 14 C 0.185 3.815 15 C -0.164 4.164 16 C -0.045 4.045 17 C -0.121 4.121 18 C -0.064 4.064 19 C -0.066 4.066 20 N 0.035 4.965 21 O -0.218 6.218 22 O -0.145 6.145 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 1.645 8.452 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.126 3.874 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.050 0.950 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.204 1.204 12 N -0.242 5.242 13 C -0.113 4.113 14 C 0.089 3.911 15 C -0.184 4.184 16 C -0.064 4.064 17 C -0.140 4.140 18 C -0.083 4.083 19 C -0.151 4.151 20 N 0.549 4.451 21 O -0.421 6.421 22 O -0.367 6.367 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.196 0.804 32 H 0.205 0.795 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.569 1.809 8.291 13.555 hybrid contribution -0.247 -0.171 -1.055 1.097 sum 10.322 1.637 7.236 12.712 Atomic orbital electron populations 1.21690 0.96699 0.99076 1.00874 1.19116 0.92965 0.90365 0.84941 0.99310 1.21096 1.31047 1.11486 0.91374 0.94979 1.25430 0.95341 0.95635 1.01027 1.69944 1.37057 1.23447 1.24209 0.85806 0.78501 0.78701 0.80157 1.20608 1.19694 1.20438 1.59888 1.05099 1.54666 1.04545 1.22409 1.02132 0.96206 0.90506 1.18785 0.91223 0.90812 0.90268 1.21920 0.95674 0.98131 1.02703 1.21915 0.93472 1.00014 0.90986 1.21591 1.02186 0.89813 1.00363 1.21326 0.89030 1.03042 0.94893 1.21519 0.91904 0.83331 1.18371 1.43739 1.01880 1.02509 0.96926 1.94374 1.76360 1.15136 1.56243 1.94623 0.96144 1.93894 1.52037 0.95159 0.94401 0.91464 0.92584 0.94573 0.90086 0.91681 0.84485 0.80439 0.79463 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.65 71.98 0.62 -5.45 16 2 C 0.23 11.36 1.75 44.17 0.08 11.44 16 3 H -0.01 -0.54 7.27 -2.38 -0.02 -0.56 16 4 C -0.51 -28.29 8.04 25.60 0.21 -28.08 16 5 H 0.03 1.88 6.90 -2.91 -0.02 1.86 16 6 C 0.03 1.41 5.29 84.66 0.45 1.86 16 7 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 8 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 9 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 N -0.52 -22.36 2.49 -700.28 -1.74 -24.10 16 13 C 0.03 1.16 9.11 127.69 1.16 2.32 16 14 C 0.19 7.26 3.43 38.21 0.13 7.40 16 15 C -0.16 -5.20 8.62 22.40 0.19 -5.01 16 16 C -0.05 -1.02 10.04 22.25 0.22 -0.79 16 17 C -0.12 -2.53 10.04 22.29 0.22 -2.31 16 18 C -0.06 -1.83 9.55 22.25 0.21 -1.61 16 19 C -0.07 -2.56 6.48 36.51 0.24 -2.33 16 20 N 0.04 1.57 4.45 -46.16 -0.21 1.37 16 21 O -0.22 -9.29 18.45 18.89 0.35 -8.94 16 22 O -0.14 -7.08 17.10 18.89 0.32 -6.75 16 23 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.57 6.66 -2.39 -0.02 1.55 16 25 H 0.07 3.58 5.93 -2.38 -0.01 3.56 16 26 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.04 1.12 7.37 -2.39 -0.02 1.10 16 28 H 0.08 2.74 6.25 -2.39 -0.01 2.73 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.14 4.30 7.06 -2.91 -0.02 4.28 16 31 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.16 4.01 7.61 -2.91 -0.02 3.99 16 Total: -1.00 -67.50 281.40 5.85 -61.64 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.12 Total: 3.17 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.74 Total: -22.57 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.71 Total: -73.07 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.67 Total: -15.70 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.50 5.85 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.230 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds