Wall clock time and date at job start Thu Apr 9 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36945 * 119.99947 * 2 1 4 4 H 1.07990 * 119.99981 * 203.68462 * 3 2 1 5 5 C 1.38816 * 119.99757 * 23.68644 * 3 2 1 6 6 N 1.31615 * 119.99758 * 14.34176 * 5 3 2 7 7 Si 1.86799 * 119.99807 * 194.34320 * 5 3 2 8 8 H 1.48503 * 109.46968 * 89.99866 * 7 5 3 9 9 H 1.48498 * 109.46910 * 210.00003 * 7 5 3 10 10 H 1.48498 * 109.47089 * 330.00127 * 7 5 3 11 11 C 1.46494 * 120.00220 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.47336 * 269.99563 * 11 2 1 13 13 O 1.21293 * 119.99696 * 0.02562 * 12 11 2 14 14 N 1.34776 * 119.99824 * 179.97438 * 12 11 2 15 15 C 1.40112 * 119.99729 * 185.21598 * 14 12 11 16 16 C 1.38845 * 120.01313 * 32.74724 * 15 14 12 17 17 C 1.38089 * 119.98403 * 180.02562 * 16 15 14 18 18 C 1.38728 * 120.01177 * 0.02791 * 17 16 15 19 19 O 1.35976 * 119.98121 * 179.97438 * 18 17 16 20 20 C 1.38711 * 120.03224 * 0.22752 * 18 17 16 21 21 C 1.38093 * 120.01527 * 359.49124 * 20 18 17 22 22 H 1.09001 * 109.46799 * 273.06924 * 1 2 3 23 23 H 1.08999 * 109.47205 * 33.06772 * 1 2 3 24 24 H 1.09002 * 109.46915 * 153.07517 * 1 2 3 25 25 H 0.97010 * 119.99505 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.47112 * 149.99780 * 11 2 1 27 27 H 1.09001 * 109.47155 * 30.00362 * 11 2 1 28 28 H 0.97001 * 120.00218 * 5.21986 * 14 12 11 29 29 H 1.07998 * 120.00799 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.99206 * 179.97438 * 17 16 15 31 31 H 0.96697 * 114.00023 * 89.99507 * 19 18 17 32 32 H 1.07996 * 119.99632 * 179.72770 * 20 18 17 33 33 H 1.08004 * 120.01018 * 180.23499 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1614 1.2254 -0.3757 5 6 1.5433 2.3375 0.4830 6 7 0.4380 2.2512 1.1923 7 14 2.2960 4.0095 0.1261 8 1 1.7358 4.5442 -1.1410 9 1 1.9816 4.9414 1.2386 10 1 3.7689 3.8718 -0.0031 11 6 2.1975 -1.2686 -0.0006 12 6 2.4488 -1.7043 1.4201 13 8 2.0543 -1.0223 2.3423 14 7 3.1110 -2.8522 1.6657 15 6 3.2495 -3.3131 2.9816 16 6 2.2466 -3.0722 3.9111 17 6 2.3840 -3.5263 5.2079 18 6 3.5241 -4.2226 5.5822 19 8 3.6589 -4.6690 6.8595 20 6 4.5287 -4.4590 4.6554 21 6 4.3900 -4.0105 3.3568 22 1 -0.3633 0.0550 1.0262 23 1 -0.3633 0.8612 -0.5607 24 1 -0.3633 -0.9163 -0.4654 25 1 0.0144 3.0559 1.5301 26 1 3.1499 -1.1381 -0.5144 27 1 1.6085 -2.0281 -0.5148 28 1 3.4917 -3.3592 0.9316 29 1 1.3593 -2.5297 3.6199 30 1 1.6042 -3.3385 5.9311 31 1 3.3074 -5.5580 7.0046 32 1 5.4179 -4.9973 4.9486 33 1 5.1706 -4.1980 2.6343 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063515898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:54 Heat of formation + Delta-G solvation = -17.308375 kcal Electronic energy + Delta-G solvation = -17831.791290 eV Core-core repulsion = 14859.071728 eV Total energy + Delta-G solvation = -2972.719562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09858 -38.68006 -36.60293 -35.07179 -33.70064 -31.31135 -30.85669 -28.83024 -26.75350 -25.76920 -23.00313 -22.52688 -21.29161 -19.71333 -18.33321 -17.48528 -16.70603 -16.40934 -15.45752 -15.21232 -14.81648 -14.34353 -14.07553 -13.53678 -13.33958 -13.20585 -12.88702 -12.56416 -12.18852 -11.89784 -11.77184 -11.23601 -10.85680 -10.68231 -10.45757 -10.43651 -10.02625 -9.92354 -9.80624 -9.16438 -8.82745 -8.50651 -7.68498 -6.79503 -5.72370 -3.20158 1.33956 1.48039 3.34122 3.37936 3.45427 3.47683 3.55888 3.88547 4.31361 4.50377 4.97635 5.05255 5.37338 5.44718 5.51339 5.58624 5.71205 5.85222 6.06174 6.12727 6.21528 6.21923 6.53295 6.56382 6.68909 6.71630 7.18336 7.31249 7.70103 7.71938 7.80834 7.91611 8.36557 8.93418 9.19536 9.81091 10.28673 11.32369 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.032845 B = 0.004990 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.283451 B = 5610.055682 C = 5812.532165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.569 5.569 3 C -0.267 4.267 4 H 0.070 0.930 5 C 0.012 3.988 6 N -0.891 5.891 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.133 3.867 12 C 0.464 3.536 13 O -0.483 6.483 14 N -0.693 5.693 15 C 0.159 3.841 16 C -0.110 4.110 17 C -0.122 4.122 18 C 0.068 3.932 19 O -0.500 6.500 20 C -0.125 4.125 21 C -0.145 4.145 22 H 0.034 0.966 23 H 0.048 0.952 24 H -0.001 1.001 25 H 0.253 0.747 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.403 0.597 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.382 0.618 32 H 0.126 0.874 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -15.997 2.133 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.288 5.288 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.188 4.188 6 N -0.533 5.533 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.000 4.000 12 C 0.249 3.751 13 O -0.353 6.353 14 N -0.341 5.341 15 C 0.063 3.937 16 C -0.130 4.130 17 C -0.141 4.141 18 C 0.023 3.977 19 O -0.309 6.309 20 C -0.144 4.144 21 C -0.166 4.166 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.238 0.762 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.237 0.763 32 H 0.144 0.856 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.634 -14.651 2.870 15.632 hybrid contribution 0.459 0.211 -0.196 0.542 sum 5.093 -14.440 2.674 15.543 Atomic orbital electron populations 1.20864 0.81944 0.95910 0.99704 1.43914 1.02090 0.99764 1.83072 1.19147 0.99381 0.84964 1.36123 0.91224 1.25106 0.97982 0.98746 0.96958 1.70105 1.20379 1.27355 1.35486 0.86248 0.78811 0.84004 0.77374 1.21312 1.21670 1.20413 1.21095 0.98281 0.90590 0.90026 1.24216 0.76320 0.78396 0.96130 1.90729 1.46954 1.51491 1.46081 1.44557 1.58183 1.25730 1.05652 1.18021 0.93340 0.95777 0.86594 1.21169 0.99332 0.99978 0.92525 1.21313 0.97456 0.99134 0.96193 1.18374 0.94622 1.00702 0.83983 1.84875 1.83989 1.36739 1.25337 1.21095 0.99260 1.01682 0.92402 1.20756 0.96438 1.03002 0.96369 0.94771 0.93344 0.98240 0.93666 0.90604 0.91044 0.76246 0.84173 0.85460 0.76340 0.85603 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 9.03 59.85 0.54 4.53 16 2 N -0.57 -14.39 2.41 -182.50 -0.44 -14.83 16 3 C -0.27 -7.44 9.64 -15.05 -0.15 -7.59 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 5 C 0.01 0.36 5.05 -17.43 -0.09 0.27 16 6 N -0.89 -26.91 10.84 55.49 0.60 -26.31 16 7 Si 0.91 22.30 29.58 -169.99 -5.03 17.27 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.13 2.59 6.19 -5.19 -0.03 2.56 16 12 C 0.46 9.39 7.64 -10.98 -0.08 9.31 16 13 O -0.48 -12.45 14.08 5.55 0.08 -12.37 16 14 N -0.69 -10.60 5.35 -9.83 -0.05 -10.65 16 15 C 0.16 2.50 6.29 -83.62 -0.53 1.98 16 16 C -0.11 -1.88 8.65 -39.41 -0.34 -2.22 16 17 C -0.12 -1.83 9.98 -39.45 -0.39 -2.22 16 18 C 0.07 0.93 6.70 -39.23 -0.26 0.66 16 19 O -0.50 -5.91 13.50 -19.67 -0.27 -6.18 16 20 C -0.13 -1.58 9.98 -39.46 -0.39 -1.97 16 21 C -0.14 -1.89 9.96 -39.41 -0.39 -2.28 16 22 H 0.03 0.95 7.44 -51.93 -0.39 0.56 16 23 H 0.05 1.27 7.29 -51.93 -0.38 0.89 16 24 H 0.00 -0.02 7.86 -51.93 -0.41 -0.43 16 25 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 27 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 28 H 0.40 4.44 8.82 -40.82 -0.36 4.08 16 29 H 0.14 2.75 6.37 -52.49 -0.33 2.41 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.38 2.47 9.06 45.56 0.41 2.88 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -35.78 289.29 -5.96 -41.74 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.10 Total: 3.94 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.12 Total: 3.03 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.11 Total: -51.79 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.19 Total: -18.55 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.78 -5.96 -41.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063515898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.427 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds