Wall clock time and date at job start Thu Apr 9 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36945 * 119.99947 * 2 1 4 4 H 1.07990 * 119.99981 * 203.68462 * 3 2 1 5 5 C 1.38816 * 119.99757 * 23.68644 * 3 2 1 6 6 N 1.31615 * 119.99758 * 14.34176 * 5 3 2 7 7 Si 1.86799 * 119.99807 * 194.34320 * 5 3 2 8 8 H 1.48503 * 109.46968 * 89.99866 * 7 5 3 9 9 H 1.48498 * 109.46910 * 210.00003 * 7 5 3 10 10 H 1.48498 * 109.47089 * 330.00127 * 7 5 3 11 11 C 1.46494 * 120.00220 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.47336 * 269.99563 * 11 2 1 13 13 O 1.21293 * 119.99696 * 0.02562 * 12 11 2 14 14 N 1.34776 * 119.99824 * 179.97438 * 12 11 2 15 15 C 1.40112 * 119.99729 * 185.21598 * 14 12 11 16 16 C 1.38845 * 120.01313 * 32.74724 * 15 14 12 17 17 C 1.38089 * 119.98403 * 180.02562 * 16 15 14 18 18 C 1.38728 * 120.01177 * 0.02791 * 17 16 15 19 19 O 1.35976 * 119.98121 * 179.97438 * 18 17 16 20 20 C 1.38711 * 120.03224 * 0.22752 * 18 17 16 21 21 C 1.38093 * 120.01527 * 359.49124 * 20 18 17 22 22 H 1.09001 * 109.46799 * 273.06924 * 1 2 3 23 23 H 1.08999 * 109.47205 * 33.06772 * 1 2 3 24 24 H 1.09002 * 109.46915 * 153.07517 * 1 2 3 25 25 H 0.97010 * 119.99505 * 179.97438 * 6 5 3 26 26 H 1.09000 * 109.47112 * 149.99780 * 11 2 1 27 27 H 1.09001 * 109.47155 * 30.00362 * 11 2 1 28 28 H 0.97001 * 120.00218 * 5.21986 * 14 12 11 29 29 H 1.07998 * 120.00799 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.99206 * 179.97438 * 17 16 15 31 31 H 0.96697 * 114.00023 * 89.99507 * 19 18 17 32 32 H 1.07996 * 119.99632 * 179.72770 * 20 18 17 33 33 H 1.08004 * 120.01018 * 180.23499 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1614 1.2254 -0.3757 5 6 1.5433 2.3375 0.4830 6 7 0.4380 2.2512 1.1923 7 14 2.2960 4.0095 0.1261 8 1 1.7358 4.5442 -1.1410 9 1 1.9816 4.9414 1.2386 10 1 3.7689 3.8718 -0.0031 11 6 2.1975 -1.2686 -0.0006 12 6 2.4488 -1.7043 1.4201 13 8 2.0543 -1.0223 2.3423 14 7 3.1110 -2.8522 1.6657 15 6 3.2495 -3.3131 2.9816 16 6 2.2466 -3.0722 3.9111 17 6 2.3840 -3.5263 5.2079 18 6 3.5241 -4.2226 5.5822 19 8 3.6589 -4.6690 6.8595 20 6 4.5287 -4.4590 4.6554 21 6 4.3900 -4.0105 3.3568 22 1 -0.3633 0.0550 1.0262 23 1 -0.3633 0.8612 -0.5607 24 1 -0.3633 -0.9163 -0.4654 25 1 0.0144 3.0559 1.5301 26 1 3.1499 -1.1381 -0.5144 27 1 1.6085 -2.0281 -0.5148 28 1 3.4917 -3.3592 0.9316 29 1 1.3593 -2.5297 3.6199 30 1 1.6042 -3.3385 5.9311 31 1 3.3074 -5.5580 7.0046 32 1 5.4179 -4.9973 4.9486 33 1 5.1706 -4.1980 2.6343 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063515898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:54 Heat of formation + Delta-G solvation = -44.930777 kcal Electronic energy + Delta-G solvation = -17832.989087 eV Core-core repulsion = 14859.071728 eV Total energy + Delta-G solvation = -2973.917359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39414 -39.97063 -37.84063 -36.89367 -35.08322 -33.31638 -31.96602 -30.23232 -28.32382 -27.80035 -24.36682 -23.86522 -22.82809 -21.20448 -19.33844 -18.96693 -18.53478 -17.87122 -16.82123 -16.59403 -16.34278 -15.83729 -15.52131 -15.17819 -14.87815 -14.74456 -14.32893 -13.80774 -13.76036 -13.34741 -13.08044 -12.95693 -12.79674 -12.52443 -12.26042 -12.06390 -11.88808 -11.50679 -11.14434 -10.83642 -10.54217 -9.96626 -8.89070 -8.82054 -7.83746 -5.34001 0.21027 0.36936 1.44741 1.46461 1.55153 1.86645 2.23358 2.51126 2.75329 3.33108 3.34958 3.68140 3.89414 4.02119 4.19440 4.37597 4.56457 4.60581 4.69296 4.72294 4.80848 5.02682 5.16706 5.26109 5.38078 5.45744 5.56024 5.61459 5.71271 5.99341 6.27578 6.67548 6.90597 7.11384 7.47337 7.82652 8.24158 9.20078 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.032845 B = 0.004990 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.283451 B = 5610.055682 C = 5812.532165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.590 5.590 3 C -0.269 4.269 4 H 0.078 0.922 5 C -0.051 4.051 6 N -0.932 5.932 7 Si 0.970 3.030 8 H -0.278 1.278 9 H -0.302 1.302 10 H -0.266 1.266 11 C 0.129 3.871 12 C 0.468 3.532 13 O -0.550 6.550 14 N -0.669 5.669 15 C 0.132 3.868 16 C -0.134 4.134 17 C -0.139 4.139 18 C 0.078 3.922 19 O -0.507 6.507 20 C -0.121 4.121 21 C -0.128 4.128 22 H -0.009 1.009 23 H 0.023 0.977 24 H 0.041 0.959 25 H 0.245 0.755 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.426 0.574 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.408 0.592 32 H 0.160 0.840 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -18.284 1.426 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.310 5.310 3 C -0.399 4.399 4 H 0.096 0.904 5 C -0.247 4.247 6 N -0.577 5.577 7 Si 0.798 3.202 8 H -0.204 1.204 9 H -0.229 1.229 10 H -0.191 1.191 11 C -0.002 4.002 12 C 0.255 3.745 13 O -0.424 6.424 14 N -0.319 5.319 15 C 0.037 3.963 16 C -0.155 4.155 17 C -0.158 4.158 18 C 0.032 3.968 19 O -0.320 6.320 20 C -0.140 4.140 21 C -0.148 4.148 22 H 0.009 0.991 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.265 0.735 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.267 0.733 32 H 0.178 0.822 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.429 -17.053 2.131 18.723 hybrid contribution -0.314 0.671 0.113 0.749 sum 7.115 -16.383 2.244 18.001 Atomic orbital electron populations 1.20574 0.82518 0.96803 0.97100 1.44064 1.02242 1.01180 1.83548 1.19561 0.99501 0.86281 1.34530 0.90388 1.25929 0.98808 1.02404 0.97576 1.70313 1.22265 1.27480 1.37642 0.85240 0.78566 0.79595 0.76847 1.20392 1.22891 1.19086 1.21355 0.99717 0.89282 0.89836 1.23924 0.75970 0.79076 0.95568 1.90734 1.49945 1.53983 1.47739 1.43972 1.56840 1.24365 1.06712 1.18163 0.94426 0.97536 0.86207 1.21004 0.99139 1.01152 0.94182 1.21396 0.98750 1.00044 0.95573 1.18460 0.93957 0.99596 0.84746 1.84807 1.84105 1.38829 1.24256 1.21483 0.99788 1.00959 0.91781 1.21091 0.95653 1.00697 0.97363 0.99062 0.95778 0.94027 0.94595 0.87893 0.86941 0.73452 0.87962 0.85279 0.73323 0.82215 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 9.03 127.77 1.15 10.06 16 2 N -0.59 -29.79 2.41 -731.31 -1.76 -31.55 16 3 C -0.27 -15.03 9.64 84.03 0.81 -14.22 16 4 H 0.08 4.13 7.86 -2.92 -0.02 4.11 16 5 C -0.05 -3.01 5.05 84.86 0.43 -2.58 16 6 N -0.93 -58.87 10.84 21.65 0.23 -58.64 16 7 Si 0.97 46.70 29.58 68.60 2.03 48.73 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 C 0.13 4.76 6.19 85.64 0.53 5.29 16 12 C 0.47 18.70 7.64 87.66 0.67 19.37 16 13 O -0.55 -29.39 14.08 -3.07 -0.04 -29.43 16 14 N -0.67 -19.21 5.35 -303.39 -1.62 -20.83 16 15 C 0.13 3.98 6.29 38.11 0.24 4.22 16 16 C -0.13 -4.73 8.65 22.38 0.19 -4.53 16 17 C -0.14 -4.17 9.98 22.35 0.22 -3.94 16 18 C 0.08 1.93 6.70 22.50 0.15 2.08 16 19 O -0.51 -10.52 13.50 -93.28 -1.26 -11.78 16 20 C -0.12 -2.57 9.98 22.35 0.22 -2.35 16 21 C -0.13 -2.85 9.96 22.38 0.22 -2.63 16 22 H -0.01 -0.54 7.44 -2.39 -0.02 -0.55 16 23 H 0.02 1.29 7.29 -2.39 -0.02 1.27 16 24 H 0.04 1.71 7.86 -2.39 -0.02 1.69 16 25 H 0.24 15.08 8.31 -92.70 -0.77 14.31 16 26 H 0.10 3.25 8.03 -2.39 -0.02 3.24 16 27 H 0.11 3.21 7.87 -2.39 -0.02 3.19 16 28 H 0.43 7.89 8.82 -92.71 -0.82 7.07 16 29 H 0.10 4.36 6.37 -2.91 -0.02 4.34 16 30 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.41 3.94 9.06 -74.06 -0.67 3.27 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -82.25 289.29 2.08 -80.17 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.34 Total: 12.55 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 4.85 Total: 10.78 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -3.15 Total: -111.02 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.30 Total: -41.21 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.25 2.08 -80.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063515898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.239 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds