Wall clock time and date at job start Thu Apr 9 2020 12:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47637 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47440 * 300.00290 * 3 2 1 6 6 H 1.48506 * 109.46975 * 59.99889 * 3 2 1 7 7 C 1.38957 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00117 * 198.21835 * 7 2 1 9 9 N 1.37100 * 119.99742 * 18.21590 * 7 2 1 10 10 C 1.34777 * 120.00128 * 44.29016 * 9 7 2 11 11 O 1.21297 * 119.99789 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00023 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47435 * 179.97438 * 12 10 9 14 14 N 1.46497 * 109.47242 * 180.02562 * 13 12 10 15 15 C 1.34428 * 126.82402 * 125.00393 * 14 13 12 16 16 N 1.30839 * 108.07675 * 179.97438 * 15 14 13 17 17 C 1.33241 * 109.82659 * 359.97438 * 16 15 14 18 18 N 1.30711 * 108.95012 * 0.26172 * 17 16 15 19 19 C 1.46500 * 119.99808 * 224.28279 * 9 7 2 20 20 C 1.53005 * 117.49853 * 3.23036 * 19 9 7 21 21 C 1.52999 * 117.50041 * 294.60873 * 19 9 7 22 22 H 0.97000 * 119.99974 * 354.93315 * 1 2 3 23 23 H 1.09012 * 109.47366 * 59.99763 * 12 10 9 24 24 H 1.09005 * 109.47288 * 299.99836 * 12 10 9 25 25 H 1.08999 * 109.47188 * 59.99446 * 13 12 10 26 26 H 1.09005 * 109.46852 * 300.00230 * 13 12 10 27 27 H 1.07998 * 125.96489 * 0.02562 * 15 14 13 28 28 H 1.08004 * 125.52407 * 180.02562 * 17 16 15 29 29 H 1.09001 * 115.54744 * 148.93474 * 19 9 7 30 30 H 1.09000 * 117.49683 * 359.97438 * 20 19 9 31 31 H 1.08994 * 117.49498 * 145.01819 * 20 19 9 32 32 H 1.09005 * 117.49926 * 214.97921 * 21 19 9 33 33 H 1.08998 * 117.50235 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2270 0.2919 9 7 1.3748 -2.3608 -0.3722 10 6 0.5784 -2.3736 -1.4594 11 8 0.4223 -1.3611 -2.1088 12 6 -0.1180 -3.6459 -1.8683 13 6 -0.9536 -3.3892 -3.1240 14 7 -1.6311 -4.6259 -3.5211 15 6 -2.9506 -4.7955 -3.7140 16 7 -3.1535 -6.0408 -4.0603 17 6 -1.9927 -6.6938 -4.0995 18 7 -1.0315 -5.8709 -3.7718 19 6 1.5632 -3.5836 0.4123 20 6 2.4182 -3.4865 1.6775 21 6 2.9642 -4.1979 0.4378 22 1 -0.4850 0.8368 0.0742 23 1 -0.7697 -3.9792 -1.0605 24 1 0.6248 -4.4159 -2.0769 25 1 -0.3023 -3.0556 -3.9319 26 1 -1.6965 -2.6193 -2.9149 27 1 -3.7105 -4.0361 -3.6034 28 1 -1.8670 -7.7353 -4.3563 29 1 0.7137 -4.2664 0.4297 30 1 2.8409 -2.5130 1.9257 31 1 2.1313 -4.1056 2.5274 32 1 3.0365 -5.2850 0.4722 33 1 3.7457 -3.6926 -0.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:00 Heat of formation + Delta-G solvation = 96.068364 kcal Electronic energy + Delta-G solvation = -18146.159380 eV Core-core repulsion = 15210.648954 eV Total energy + Delta-G solvation = -2935.510427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88290 -38.73608 -36.31988 -34.44908 -32.85220 -31.13219 -31.06376 -29.86066 -25.73592 -23.85782 -21.82626 -21.78597 -21.44577 -21.05106 -19.13050 -17.35989 -16.25914 -16.14053 -15.49546 -14.89598 -14.73436 -14.52807 -14.13257 -13.98536 -13.57179 -12.96443 -12.66870 -12.39193 -11.79094 -11.64830 -11.14445 -10.98566 -10.94276 -10.87044 -10.55230 -10.21509 -10.04131 -9.91327 -9.80839 -9.66613 -9.51947 -8.79493 -8.16001 -7.12342 -6.19930 -3.95135 1.79175 2.50055 3.07575 3.24607 3.34625 3.36226 3.99640 4.19299 4.42666 4.59809 4.69920 4.87870 5.04461 5.19683 5.30891 5.47643 5.54254 5.56674 5.71930 5.77754 5.98627 6.15146 6.19297 6.23896 6.39206 6.43925 6.56292 6.69594 6.87972 6.96017 7.55057 8.18135 8.20143 8.96707 9.03471 9.56636 10.16243 10.89450 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.006231 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.674075 B = 4492.933713 C = 5287.362318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.487 3.513 11 O -0.538 6.538 12 C -0.142 4.142 13 C 0.146 3.854 14 N -0.368 5.368 15 C 0.251 3.749 16 N -0.557 5.557 17 C 0.186 3.814 18 N -0.318 5.318 19 C 0.073 3.927 20 C -0.173 4.173 21 C -0.206 4.206 22 H 0.264 0.736 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.217 0.783 28 H 0.213 0.787 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -8.528 -2.180 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.475 4.475 8 H 0.096 0.904 9 N -0.144 5.144 10 C 0.273 3.727 11 O -0.416 6.416 12 C -0.183 4.183 13 C 0.025 3.975 14 N -0.159 5.159 15 C -0.046 4.046 16 N -0.285 5.285 17 C -0.116 4.116 18 N -0.147 5.147 19 C -0.034 4.034 20 C -0.210 4.210 21 C -0.245 4.245 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.234 0.766 28 H 0.229 0.771 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.947 -8.115 -2.598 8.740 hybrid contribution 0.232 0.910 0.294 0.984 sum -1.715 -7.205 -2.303 7.756 Atomic orbital electron populations 1.69821 1.06592 1.27390 1.43012 1.25241 0.94857 0.99430 0.94112 0.86133 0.79839 0.82450 0.77530 1.19549 1.20593 1.21152 1.18913 0.94582 0.83730 1.50266 0.90365 1.42732 1.43807 1.06881 1.21000 1.19468 0.83329 0.88166 0.81701 1.90544 1.63077 1.34527 1.53499 1.21809 0.99919 0.99915 0.96684 1.21694 0.97800 0.79729 0.98273 1.50799 1.06343 1.09635 1.49077 1.26055 0.86564 0.95732 0.96244 1.70509 1.28622 1.04237 1.25089 1.25937 0.85673 1.00897 0.99132 1.78024 1.22687 0.90521 1.23429 1.21713 0.92699 0.91482 0.97463 1.23069 1.04377 1.02520 0.91076 1.23309 0.99580 0.98601 1.02993 0.92596 0.90353 0.89296 0.88605 0.87176 0.76645 0.77062 0.88097 0.87435 0.89763 0.89728 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.75 11.74 55.50 0.65 -23.10 16 2 C 0.07 2.02 4.38 -17.47 -0.08 1.94 16 3 Si 0.91 21.32 29.59 -169.99 -5.03 16.29 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.35 -9.22 7.92 -14.93 -0.12 -9.34 16 8 H 0.08 2.02 7.26 -52.48 -0.38 1.64 16 9 N -0.42 -10.25 2.83 -107.73 -0.31 -10.55 16 10 C 0.49 11.61 6.97 -10.99 -0.08 11.53 16 11 O -0.54 -14.71 13.74 5.54 0.08 -14.63 16 12 C -0.14 -2.60 4.53 -27.89 -0.13 -2.72 16 13 C 0.15 2.36 5.84 -4.04 -0.02 2.34 16 14 N -0.37 -5.55 3.69 -62.63 -0.23 -5.78 16 15 C 0.25 3.30 12.63 -90.65 -1.14 2.16 16 16 N -0.56 -7.97 11.19 -15.83 -0.18 -8.14 16 17 C 0.19 2.54 13.03 -91.81 -1.20 1.34 16 18 N -0.32 -5.00 12.57 29.29 0.37 -4.63 16 19 C 0.07 1.43 5.87 -67.93 -0.40 1.03 16 20 C -0.17 -3.07 9.80 -26.73 -0.26 -3.33 16 21 C -0.21 -3.49 10.36 -26.73 -0.28 -3.77 16 22 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 23 H 0.08 1.39 7.57 -51.92 -0.39 1.00 16 24 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 25 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 26 H 0.11 1.71 8.04 -51.93 -0.42 1.29 16 27 H 0.22 1.95 8.06 -52.49 -0.42 1.52 16 28 H 0.21 2.02 8.06 -52.48 -0.42 1.60 16 29 H 0.10 1.81 6.96 -51.93 -0.36 1.45 16 30 H 0.11 2.10 6.72 -51.93 -0.35 1.75 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 289.62 15.07 4.36 4.36 Total: -1.00 -32.85 289.62 -7.98 -40.83 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.99 Total: 4.18 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.70 Total: 1.17 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.31 Total: -52.21 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.85 -7.98 -40.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.897 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds