Wall clock time and date at job start Thu Apr 9 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47637 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47440 * 300.00290 * 3 2 1 6 6 H 1.48506 * 109.46975 * 59.99889 * 3 2 1 7 7 C 1.38957 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00117 * 198.21835 * 7 2 1 9 9 N 1.37100 * 119.99742 * 18.21590 * 7 2 1 10 10 C 1.34777 * 120.00128 * 44.29016 * 9 7 2 11 11 O 1.21297 * 119.99789 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00023 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47435 * 179.97438 * 12 10 9 14 14 N 1.46497 * 109.47242 * 180.02562 * 13 12 10 15 15 C 1.34428 * 126.82402 * 125.00393 * 14 13 12 16 16 N 1.30839 * 108.07675 * 179.97438 * 15 14 13 17 17 C 1.33241 * 109.82659 * 359.97438 * 16 15 14 18 18 N 1.30711 * 108.95012 * 0.26172 * 17 16 15 19 19 C 1.46500 * 119.99808 * 224.28279 * 9 7 2 20 20 C 1.53005 * 117.49853 * 3.23036 * 19 9 7 21 21 C 1.52999 * 117.50041 * 294.60873 * 19 9 7 22 22 H 0.97000 * 119.99974 * 354.93315 * 1 2 3 23 23 H 1.09012 * 109.47366 * 59.99763 * 12 10 9 24 24 H 1.09005 * 109.47288 * 299.99836 * 12 10 9 25 25 H 1.08999 * 109.47188 * 59.99446 * 13 12 10 26 26 H 1.09005 * 109.46852 * 300.00230 * 13 12 10 27 27 H 1.07998 * 125.96489 * 0.02562 * 15 14 13 28 28 H 1.08004 * 125.52407 * 180.02562 * 17 16 15 29 29 H 1.09001 * 115.54744 * 148.93474 * 19 9 7 30 30 H 1.09000 * 117.49683 * 359.97438 * 20 19 9 31 31 H 1.08994 * 117.49498 * 145.01819 * 20 19 9 32 32 H 1.09005 * 117.49926 * 214.97921 * 21 19 9 33 33 H 1.08998 * 117.50235 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2270 0.2919 9 7 1.3748 -2.3608 -0.3722 10 6 0.5784 -2.3736 -1.4594 11 8 0.4223 -1.3611 -2.1088 12 6 -0.1180 -3.6459 -1.8683 13 6 -0.9536 -3.3892 -3.1240 14 7 -1.6311 -4.6259 -3.5211 15 6 -2.9506 -4.7955 -3.7140 16 7 -3.1535 -6.0408 -4.0603 17 6 -1.9927 -6.6938 -4.0995 18 7 -1.0315 -5.8709 -3.7718 19 6 1.5632 -3.5836 0.4123 20 6 2.4182 -3.4865 1.6775 21 6 2.9642 -4.1979 0.4378 22 1 -0.4850 0.8368 0.0742 23 1 -0.7697 -3.9792 -1.0605 24 1 0.6248 -4.4159 -2.0769 25 1 -0.3023 -3.0556 -3.9319 26 1 -1.6965 -2.6193 -2.9149 27 1 -3.7105 -4.0361 -3.6034 28 1 -1.8670 -7.7353 -4.3563 29 1 0.7137 -4.2664 0.4297 30 1 2.8409 -2.5130 1.9257 31 1 2.1313 -4.1056 2.5274 32 1 3.0365 -5.2850 0.4722 33 1 3.7457 -3.6926 -0.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:59 Heat of formation + Delta-G solvation = 77.038394 kcal Electronic energy + Delta-G solvation = -18146.984582 eV Core-core repulsion = 15210.648954 eV Total energy + Delta-G solvation = -2936.335628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.96015 -40.48425 -37.92807 -35.80410 -34.70320 -32.94010 -32.15172 -31.29536 -27.46465 -25.38491 -23.20670 -22.90176 -22.84532 -22.42926 -20.87729 -18.74658 -17.93989 -17.66610 -16.79101 -16.66957 -16.26561 -15.76811 -15.75757 -15.23787 -14.88479 -14.55473 -14.25328 -13.92054 -13.34911 -13.14083 -12.91268 -12.76058 -12.60759 -12.28701 -12.15202 -12.04302 -11.68603 -11.27049 -11.01534 -10.79546 -10.74863 -10.65029 -10.01645 -9.00190 -8.21992 -5.99852 0.72868 1.34105 1.38187 1.44267 1.51799 2.04360 2.20953 2.37199 3.02772 3.10175 3.32968 3.54388 3.57284 3.89763 3.94957 4.09151 4.16372 4.26062 4.30844 4.40495 4.49220 4.77004 4.85011 4.87027 5.01975 5.24829 5.29889 5.44335 5.49647 5.54505 5.88841 6.19251 7.01467 7.13258 7.14356 7.66902 8.29409 8.86997 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.006231 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.674075 B = 4492.933713 C = 5287.362318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.357 4.357 8 H 0.076 0.924 9 N -0.441 5.441 10 C 0.473 3.527 11 O -0.583 6.583 12 C -0.120 4.120 13 C 0.160 3.840 14 N -0.380 5.380 15 C 0.258 3.742 16 N -0.574 5.574 17 C 0.192 3.808 18 N -0.352 5.352 19 C 0.043 3.957 20 C -0.169 4.169 21 C -0.181 4.181 22 H 0.261 0.739 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.252 0.748 28 H 0.246 0.754 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -10.113 -1.856 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.094 0.906 9 N -0.161 5.161 10 C 0.262 3.738 11 O -0.465 6.465 12 C -0.161 4.161 13 C 0.038 3.962 14 N -0.170 5.170 15 C -0.038 4.038 16 N -0.302 5.302 17 C -0.110 4.110 18 N -0.181 5.181 19 C -0.062 4.062 20 C -0.206 4.206 21 C -0.220 4.220 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.268 0.732 28 H 0.262 0.738 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.986 -9.740 -2.245 10.191 hybrid contribution 0.262 1.291 0.179 1.329 sum -1.724 -8.449 -2.066 8.867 Atomic orbital electron populations 1.69910 1.07812 1.27679 1.44982 1.25996 0.95573 1.02370 0.94142 0.85272 0.79180 0.78936 0.77188 1.18524 1.21921 1.19895 1.19109 0.94734 0.85082 1.49545 0.90628 1.42977 1.43624 1.07748 1.21757 1.20327 0.82982 0.89364 0.81131 1.90503 1.64556 1.36602 1.54832 1.21561 0.99894 0.96871 0.97805 1.21391 0.97566 0.80464 0.96803 1.50665 1.06926 1.09209 1.50194 1.26843 0.86434 0.96212 0.94305 1.70589 1.28937 1.04788 1.25899 1.26657 0.84997 1.02004 0.97341 1.77998 1.23931 0.91030 1.25095 1.21996 0.94896 0.90552 0.98744 1.23118 1.03394 1.02179 0.91911 1.23314 0.96851 1.00398 1.01449 0.92966 0.89505 0.88656 0.89810 0.86747 0.73203 0.73783 0.86177 0.89822 0.86545 0.86066 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.49 11.74 21.66 0.25 -50.24 16 2 C 0.03 1.42 4.38 84.93 0.37 1.79 16 3 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.36 -19.17 7.92 84.04 0.67 -18.50 16 8 H 0.08 3.97 7.26 -2.91 -0.02 3.95 16 9 N -0.44 -21.40 2.83 -613.12 -1.74 -23.13 16 10 C 0.47 22.80 6.97 87.65 0.61 23.41 16 11 O -0.58 -32.70 13.74 -3.08 -0.04 -32.74 16 12 C -0.12 -4.31 4.53 29.85 0.14 -4.18 16 13 C 0.16 5.08 5.84 86.38 0.50 5.58 16 14 N -0.38 -10.89 3.69 -352.06 -1.30 -12.19 16 15 C 0.26 6.24 12.63 180.36 2.28 8.52 16 16 N -0.57 -15.11 11.19 -204.00 -2.28 -17.40 16 17 C 0.19 4.80 13.03 180.77 2.36 7.15 16 18 N -0.35 -10.49 12.57 -61.24 -0.77 -11.26 16 19 C 0.04 1.63 5.87 44.99 0.26 1.90 16 20 C -0.17 -5.67 9.80 30.60 0.30 -5.37 16 21 C -0.18 -5.72 10.36 30.59 0.32 -5.41 16 22 H 0.26 14.56 8.32 -92.71 -0.77 13.79 16 23 H 0.09 2.96 7.57 -2.38 -0.02 2.95 16 24 H 0.10 3.29 8.11 -2.38 -0.02 3.27 16 25 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 26 H 0.11 3.52 8.04 -2.38 -0.02 3.50 16 27 H 0.25 3.82 8.06 -2.91 -0.02 3.80 16 28 H 0.25 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.12 4.03 6.96 -2.39 -0.02 4.02 16 30 H 0.08 3.23 6.72 -2.39 -0.02 3.22 16 31 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -71.79 289.62 5.07 -66.72 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.12 Total: 18.86 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 7.80 Total: 14.90 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -5.84 Total: -114.22 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.04 Total: -32.74 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.79 5.07 -66.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.762 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds