Wall clock time and date at job start Thu Apr 9 2020 12:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99866 * 2 1 4 4 O 1.21584 * 119.99654 * 359.97438 * 3 2 1 5 5 N 1.34769 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.46508 * 120.00011 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47103 * 179.97438 * 6 5 3 8 8 C 1.38299 * 119.93247 * 90.00118 * 7 6 5 9 9 C 1.38101 * 120.07425 * 179.97438 * 8 7 6 10 10 C 1.38886 * 119.92536 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9 22 22 H 1.08994 * 109.47795 * 300.00714 * 1 2 3 23 23 H 1.09002 * 109.46877 * 60.01376 * 1 2 3 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00042 * 179.97438 * 2 1 3 26 26 H 0.97001 * 120.00514 * 359.97438 * 5 3 2 27 27 H 1.08998 * 109.46632 * 59.99915 * 6 5 3 28 28 H 1.08996 * 109.47144 * 299.99646 * 6 5 3 29 29 H 1.07999 * 119.96503 * 0.02562 * 8 7 6 30 30 H 1.07992 * 120.03608 * 180.02562 * 9 8 7 31 31 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 33 33 H 1.07997 * 119.96326 * 180.27708 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1606 0.0013 8 6 6.3801 2.0335 -1.1965 9 6 7.7379 1.7816 -1.1987 10 6 8.4211 1.6555 0.0039 11 8 9.7559 1.4085 0.0051 12 6 10.3799 1.4105 -1.1901 13 1 9.8065 1.5217 -2.0984 14 6 11.7580 1.2699 -1.2530 15 7 12.4566 1.1349 -0.1464 16 14 12.6225 1.2735 -2.9088 17 1 12.3613 2.5611 -3.6009 18 1 14.0843 1.1096 -2.7044 19 1 12.1094 0.1532 -3.7375 20 6 7.7350 1.7774 1.2052 21 6 6.3781 2.0349 1.2005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3633 0.5136 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.9500 -0.8400 0.0004 26 1 3.9716 0.3272 0.0013 27 1 3.9554 3.0081 0.8895 28 1 3.9562 3.0069 -0.8905 29 1 5.8483 2.1320 -2.1314 30 1 8.2679 1.6828 -2.1344 31 1 13.4205 1.0362 -0.1904 32 1 8.2627 1.6754 2.1419 33 1 5.8448 2.1343 2.1343 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069717716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:09 Heat of formation + Delta-G solvation = -34.659028 kcal Electronic energy + Delta-G solvation = -17144.734889 eV Core-core repulsion = 14171.262946 eV Total energy + Delta-G solvation = -2973.471943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92125 -39.06984 -36.92266 -34.68671 -34.29299 -32.37154 -30.29861 -29.97552 -26.95122 -25.61241 -24.29597 -22.05612 -20.90823 -20.62442 -18.61561 -18.07071 -17.08762 -16.35586 -15.61519 -14.82225 -14.70216 -14.53653 -14.36889 -13.93409 -13.64714 -13.58745 -13.27686 -12.78662 -12.62371 -12.39416 -12.04755 -11.68276 -11.39504 -10.95575 -10.79021 -10.70779 -10.50556 -10.21805 -9.43941 -9.33254 -8.91610 -8.76127 -8.28839 -7.33672 -6.53558 -4.12602 2.03132 2.12678 2.91362 3.08488 3.10507 3.12532 3.25242 3.89952 4.29402 4.57758 5.00109 5.01621 5.16555 5.25447 5.36434 5.45321 5.61152 5.67028 5.82291 5.93939 6.11791 6.34607 6.35262 6.57642 6.61682 6.79946 6.88267 6.98680 7.15311 7.27583 7.34645 7.71117 7.91047 8.04662 8.63199 8.91661 9.59807 10.63928 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.048015 B = 0.003714 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.010826 B = 7536.937715 C = 7762.133564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.756 5.756 3 C 0.698 3.302 4 O -0.598 6.598 5 N -0.738 5.738 6 C 0.197 3.803 7 C -0.214 4.214 8 C -0.050 4.050 9 C -0.238 4.238 10 C 0.161 3.839 11 O -0.173 6.173 12 C -0.394 4.394 13 H 0.093 0.907 14 C 0.041 3.959 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.196 4.196 21 C -0.054 4.054 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.397 0.603 26 H 0.397 0.603 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.272 0.728 32 H 0.118 0.882 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -3.497 -0.882 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.412 5.412 3 C 0.398 3.602 4 O -0.476 6.476 5 N -0.393 5.393 6 C 0.075 3.925 7 C -0.216 4.216 8 C -0.069 4.069 9 C -0.257 4.257 10 C 0.106 3.894 11 O -0.076 6.076 12 C -0.470 4.470 13 H 0.110 0.890 14 C -0.164 4.164 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.072 4.072 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.230 0.770 26 H 0.231 0.769 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.339 -2.569 -0.632 15.565 hybrid contribution 0.925 -0.835 -0.881 1.526 sum -14.414 -3.404 -1.512 14.888 Atomic orbital electron populations 1.21344 0.78535 1.01664 1.02106 1.44958 1.07611 1.07340 1.81263 1.16072 0.82078 0.84115 0.77913 1.90906 1.68101 1.30370 1.58265 1.45511 1.04045 1.10501 1.79256 1.19827 0.87161 0.83849 1.01713 1.19228 0.93876 1.14800 0.93674 1.20651 0.93629 0.96125 0.96484 1.21161 0.94679 1.11369 0.98480 1.19441 0.85353 0.91307 0.93315 1.83976 1.14959 1.75510 1.33136 1.21314 0.90266 1.52402 0.83067 0.88960 1.25318 0.95379 0.96338 0.99393 1.70024 1.07568 1.44692 1.27122 0.85763 0.78344 0.79258 0.79990 1.19400 1.20207 1.19431 1.20215 0.94067 1.10928 0.96307 1.20543 0.93155 0.96928 0.96617 0.92560 0.92561 0.90907 0.77002 0.76888 0.91730 0.91772 0.87376 0.85430 0.91812 0.86375 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 10.70 59.85 0.64 1.53 16 2 N -0.76 -7.42 5.72 -72.07 -0.41 -7.83 16 3 C 0.70 9.68 8.57 -86.92 -0.74 8.94 16 4 O -0.60 -10.73 16.34 5.29 0.09 -10.64 16 5 N -0.74 -9.44 5.55 -66.42 -0.37 -9.81 16 6 C 0.20 2.84 5.80 -5.19 -0.03 2.81 16 7 C -0.21 -3.44 5.25 -104.58 -0.55 -3.99 16 8 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 9 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 12 C -0.39 -10.71 9.49 30.89 0.29 -10.41 16 13 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 16 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 21 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.40 2.74 8.84 -40.82 -0.36 2.38 16 26 H 0.40 4.37 8.48 -40.82 -0.35 4.02 16 27 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 293.65 15.07 4.43 4.43 Total: -1.00 -32.40 293.65 -6.59 -38.99 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.79 Total: 7.42 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.27 Total: -8.81 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.02 Total: -41.53 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.43 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.40 -6.59 -38.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069717716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.332 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds