Wall clock time and date at job start Thu Apr 9 2020 12:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34668 * 117.00284 * 2 1 4 4 O 1.21438 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.48046 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39587 * 120.88662 * 353.69385 * 5 3 2 7 7 C 1.39152 * 118.92306 * 180.02562 * 6 5 3 8 8 N 1.38839 * 119.64686 * 179.72792 * 7 6 5 9 9 C 1.46498 * 119.99999 * 185.00070 * 8 7 6 10 10 C 1.36879 * 120.00025 * 4.99568 * 8 7 6 11 11 H 1.08007 * 120.00106 * 26.67236 * 10 8 7 12 12 C 1.38831 * 120.00198 * 206.67268 * 10 8 7 13 13 N 1.31558 * 120.00146 * 11.22872 * 12 10 8 14 14 Si 1.86805 * 120.00050 * 191.22620 * 12 10 8 15 15 H 1.48503 * 109.47197 * 90.00010 * 14 12 10 16 16 H 1.48499 * 109.46910 * 209.99974 * 14 12 10 17 17 H 1.48493 * 109.47162 * 329.99847 * 14 12 10 18 18 N 1.32458 * 120.70466 * 359.97438 * 7 6 5 19 19 C 1.31813 * 121.95475 * 0.02562 * 18 7 6 20 20 C 1.38075 * 121.01542 * 359.97438 * 19 18 7 21 21 C 1.50700 * 120.41686 * 180.02562 * 20 19 18 22 22 H 1.09009 * 109.46902 * 60.00359 * 1 2 3 23 23 H 1.09003 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47224 * 300.00495 * 1 2 3 25 25 H 1.07997 * 120.53436 * 0.04327 * 6 5 3 26 26 H 1.09009 * 109.46898 * 90.95488 * 9 8 7 27 27 H 1.08997 * 109.46881 * 210.95221 * 9 8 7 28 28 H 1.08992 * 109.47214 * 330.95386 * 9 8 7 29 29 H 0.96995 * 119.99880 * 179.97438 * 13 12 10 30 30 H 1.08009 * 119.49155 * 179.97438 * 19 18 7 31 31 H 1.09002 * 109.47249 * 263.67254 * 21 20 19 32 32 H 1.08999 * 109.47131 * 23.66642 * 21 20 19 33 33 H 1.08998 * 109.47442 * 143.67229 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5419 1.2773 0.0006 6 6 4.3197 0.1258 0.1327 7 6 5.7060 0.2459 0.1285 8 7 6.4941 -0.8890 0.2647 9 6 7.9496 -0.7615 0.3714 10 6 5.9111 -2.1269 0.2992 11 1 4.9608 -2.2901 -0.1873 12 6 6.5414 -3.1729 0.9596 13 7 7.5773 -2.9327 1.7342 14 14 5.9187 -4.9213 0.7482 15 1 6.6112 -5.5580 -0.4008 16 1 6.1939 -5.6975 1.9839 17 1 4.4559 -4.8984 0.4936 18 7 6.2817 1.4320 0.0010 19 6 5.5777 2.5392 -0.1258 20 6 4.1973 2.5078 -0.1314 21 6 3.4058 3.7819 -0.2778 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 3.8530 -0.8426 0.2362 26 1 8.2312 -0.6804 1.4214 27 1 8.4242 -1.6402 -0.0652 28 1 8.2763 0.1309 -0.1623 29 1 8.0174 -3.6635 2.1959 30 1 6.0886 3.4854 -0.2269 31 1 3.1119 4.1423 0.7081 32 1 4.0186 4.5355 -0.7723 33 1 2.5145 3.5894 -0.8748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:37 Heat of formation + Delta-G solvation = -32.139639 kcal Electronic energy + Delta-G solvation = -18189.227371 eV Core-core repulsion = 15215.864677 eV Total energy + Delta-G solvation = -2973.362694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28088 -38.97540 -36.46576 -35.82387 -32.68996 -31.75053 -30.65436 -27.80541 -26.65553 -26.24367 -23.78106 -23.11655 -21.50719 -20.01759 -17.81434 -17.36736 -16.52824 -16.08988 -15.48297 -15.28091 -14.45012 -14.14669 -13.91580 -13.51998 -13.26688 -13.07078 -12.86616 -12.58055 -11.95979 -11.85830 -11.77870 -11.46477 -11.27057 -10.96707 -10.87764 -10.56496 -10.53307 -10.42005 -10.01848 -9.43812 -9.04371 -8.68891 -8.43486 -6.88345 -6.48221 -3.97326 1.40544 2.23797 3.00950 3.05645 3.11418 3.14675 3.20351 3.90461 4.59044 4.63936 5.03788 5.15304 5.21682 5.28298 5.43330 5.60675 5.76436 5.86060 6.08576 6.27080 6.38925 6.44851 6.56218 6.63270 6.71292 6.77143 6.89621 7.14979 7.23513 7.26067 7.41117 7.86444 8.10574 8.37318 8.87633 9.09178 9.58742 10.46669 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.007557 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.400336 B = 3704.396274 C = 4939.393552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.514 3.486 4 O -0.508 6.508 5 C -0.044 4.044 6 C -0.183 4.183 7 C 0.354 3.646 8 N -0.413 5.413 9 C 0.125 3.875 10 C -0.315 4.315 11 H 0.099 0.901 12 C 0.035 3.965 13 N -0.863 5.863 14 Si 0.931 3.069 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.266 1.266 18 N -0.552 5.552 19 C 0.158 3.842 20 C -0.221 4.221 21 C -0.086 4.086 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.139 0.861 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.273 0.727 30 H 0.144 0.856 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 3.842 -2.798 8.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.360 3.640 4 O -0.397 6.397 5 C -0.052 4.052 6 C -0.210 4.210 7 C 0.113 3.887 8 N -0.101 5.101 9 C -0.018 4.018 10 C -0.443 4.443 11 H 0.117 0.883 12 C -0.172 4.172 13 N -0.497 5.497 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.190 1.190 18 N -0.273 5.273 19 C -0.005 4.005 20 C -0.229 4.229 21 C -0.144 4.144 22 H 0.078 0.922 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.157 0.843 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.064 3.672 -2.608 7.554 hybrid contribution -1.286 -0.963 0.085 1.609 sum -7.350 2.709 -2.523 8.230 Atomic orbital electron populations 1.23213 0.76878 1.03431 1.02179 1.86634 1.22801 1.33074 1.84203 1.21544 0.89430 0.80956 0.72080 1.90727 1.67085 1.35666 1.46263 1.18803 0.87567 0.94548 1.04308 1.21515 0.93038 0.98449 1.08032 1.18376 0.87757 0.86402 0.96196 1.42490 1.04813 1.01771 1.61065 1.21379 0.79922 0.99244 1.01258 1.19665 1.07717 0.84177 1.32776 0.88298 1.25475 0.96539 1.00854 0.94314 1.70071 1.20629 1.33183 1.25832 0.85845 0.79533 0.80959 0.77993 1.20042 1.20624 1.19019 1.66985 1.40569 0.97696 1.22062 1.21925 0.89413 0.95359 0.93821 1.20053 0.94826 0.93888 1.14169 1.20542 0.99136 0.93382 1.01301 0.92153 0.88279 0.92103 0.84306 0.92608 0.92238 0.93678 0.91709 0.83915 0.92859 0.93394 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.35 -5.98 9.93 -40.41 -0.40 -6.38 16 3 C 0.51 9.66 7.86 34.75 0.27 9.93 16 4 O -0.51 -9.64 13.32 -19.22 -0.26 -9.90 16 5 C -0.04 -0.90 5.90 -104.69 -0.62 -1.52 16 6 C -0.18 -4.05 8.85 -38.74 -0.34 -4.40 16 7 C 0.35 8.41 7.34 -155.12 -1.14 7.28 16 8 N -0.41 -10.37 3.11 -122.46 -0.38 -10.75 16 9 C 0.13 2.97 8.76 59.85 0.52 3.49 16 10 C -0.31 -7.95 8.80 -15.08 -0.13 -8.08 16 11 H 0.10 2.41 6.45 -52.48 -0.34 2.07 16 12 C 0.03 0.86 5.10 -17.45 -0.09 0.77 16 13 N -0.86 -22.17 10.87 55.49 0.60 -21.57 16 14 Si 0.93 19.11 29.57 -169.99 -5.03 14.08 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 N -0.55 -12.31 9.03 -12.48 -0.11 -12.42 16 19 C 0.16 3.02 10.82 -17.62 -0.19 2.82 16 20 C -0.22 -4.20 5.94 -104.00 -0.62 -4.82 16 21 C -0.09 -1.40 8.83 36.01 0.32 -1.08 16 22 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.14 3.09 6.00 -52.49 -0.31 2.77 16 26 H 0.06 1.39 7.51 -51.92 -0.39 1.00 16 27 H 0.06 1.42 7.26 -51.93 -0.38 1.04 16 28 H 0.04 0.99 7.27 -51.93 -0.38 0.62 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.07 1.23 5.96 -51.93 -0.31 0.92 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -28.03 283.32 -6.02 -34.06 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.77 Total: 2.69 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.95 Total: 5.92 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.11 Total: -44.74 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.66 Total: -16.28 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.03 -6.02 -34.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.919 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds