Wall clock time and date at job start Thu Apr 9 2020 12:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34668 * 117.00284 * 2 1 4 4 O 1.21438 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.48046 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.39587 * 120.88662 * 353.69385 * 5 3 2 7 7 C 1.39152 * 118.92306 * 180.02562 * 6 5 3 8 8 N 1.38839 * 119.64686 * 179.72792 * 7 6 5 9 9 C 1.46498 * 119.99999 * 185.00070 * 8 7 6 10 10 C 1.36879 * 120.00025 * 4.99568 * 8 7 6 11 11 H 1.08007 * 120.00106 * 26.67236 * 10 8 7 12 12 C 1.38831 * 120.00198 * 206.67268 * 10 8 7 13 13 N 1.31558 * 120.00146 * 11.22872 * 12 10 8 14 14 Si 1.86805 * 120.00050 * 191.22620 * 12 10 8 15 15 H 1.48503 * 109.47197 * 90.00010 * 14 12 10 16 16 H 1.48499 * 109.46910 * 209.99974 * 14 12 10 17 17 H 1.48493 * 109.47162 * 329.99847 * 14 12 10 18 18 N 1.32458 * 120.70466 * 359.97438 * 7 6 5 19 19 C 1.31813 * 121.95475 * 0.02562 * 18 7 6 20 20 C 1.38075 * 121.01542 * 359.97438 * 19 18 7 21 21 C 1.50700 * 120.41686 * 180.02562 * 20 19 18 22 22 H 1.09009 * 109.46902 * 60.00359 * 1 2 3 23 23 H 1.09003 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47224 * 300.00495 * 1 2 3 25 25 H 1.07997 * 120.53436 * 0.04327 * 6 5 3 26 26 H 1.09009 * 109.46898 * 90.95488 * 9 8 7 27 27 H 1.08997 * 109.46881 * 210.95221 * 9 8 7 28 28 H 1.08992 * 109.47214 * 330.95386 * 9 8 7 29 29 H 0.96995 * 119.99880 * 179.97438 * 13 12 10 30 30 H 1.08009 * 119.49155 * 179.97438 * 19 18 7 31 31 H 1.09002 * 109.47249 * 263.67254 * 21 20 19 32 32 H 1.08999 * 109.47131 * 23.66642 * 21 20 19 33 33 H 1.08998 * 109.47442 * 143.67229 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5419 1.2773 0.0006 6 6 4.3197 0.1258 0.1327 7 6 5.7060 0.2459 0.1285 8 7 6.4941 -0.8890 0.2647 9 6 7.9496 -0.7615 0.3714 10 6 5.9111 -2.1269 0.2992 11 1 4.9608 -2.2901 -0.1873 12 6 6.5414 -3.1729 0.9596 13 7 7.5773 -2.9327 1.7342 14 14 5.9187 -4.9213 0.7482 15 1 6.6112 -5.5580 -0.4008 16 1 6.1939 -5.6975 1.9839 17 1 4.4559 -4.8984 0.4936 18 7 6.2817 1.4320 0.0010 19 6 5.5777 2.5392 -0.1258 20 6 4.1973 2.5078 -0.1314 21 6 3.4058 3.7819 -0.2778 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 3.8530 -0.8426 0.2362 26 1 8.2312 -0.6804 1.4214 27 1 8.4242 -1.6402 -0.0652 28 1 8.2763 0.1309 -0.1623 29 1 8.0174 -3.6635 2.1959 30 1 6.0886 3.4854 -0.2269 31 1 3.1119 4.1423 0.7081 32 1 4.0186 4.5355 -0.7723 33 1 2.5145 3.5894 -0.8748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:36 Heat of formation + Delta-G solvation = -47.181238 kcal Electronic energy + Delta-G solvation = -18189.879623 eV Core-core repulsion = 15215.864677 eV Total energy + Delta-G solvation = -2974.014947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76883 -40.58179 -38.04007 -37.37580 -34.38595 -33.45428 -32.27156 -29.14188 -28.30787 -27.78875 -25.37602 -24.81892 -23.04301 -21.59945 -19.49025 -18.95355 -18.11045 -17.42419 -17.10976 -16.92908 -16.08193 -15.74149 -15.59906 -15.09313 -14.74724 -14.62681 -14.28755 -13.97914 -13.48911 -13.29505 -13.13413 -12.97575 -12.92142 -12.64158 -12.60391 -12.26702 -12.05012 -11.79475 -11.47136 -11.21785 -10.69467 -10.45234 -10.11748 -8.65209 -8.28591 -5.87059 -0.19255 0.59387 1.43592 1.45669 1.55984 1.64662 1.71276 2.21954 2.84615 2.91045 3.27179 3.70769 3.93132 4.24367 4.29672 4.34527 4.37068 4.40781 4.67856 4.78198 4.89079 4.97218 4.97636 5.01344 5.07107 5.21398 5.30399 5.31365 5.37966 5.62036 5.78329 6.09287 6.57464 6.67712 7.12543 7.29019 7.80490 8.66400 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.007557 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.400336 B = 3704.396274 C = 4939.393552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.516 3.484 4 O -0.510 6.510 5 C -0.052 4.052 6 C -0.202 4.202 7 C 0.341 3.659 8 N -0.445 5.445 9 C 0.146 3.854 10 C -0.334 4.334 11 H 0.098 0.902 12 C -0.009 4.009 13 N -0.899 5.899 14 Si 0.996 3.004 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.259 1.259 18 N -0.564 5.564 19 C 0.154 3.846 20 C -0.204 4.204 21 C -0.083 4.083 22 H 0.069 0.931 23 H 0.129 0.871 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.273 0.727 30 H 0.187 0.813 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 5.112 -3.416 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.362 3.638 4 O -0.401 6.401 5 C -0.061 4.061 6 C -0.230 4.230 7 C 0.102 3.898 8 N -0.136 5.136 9 C 0.002 3.998 10 C -0.462 4.462 11 H 0.115 0.885 12 C -0.211 4.211 13 N -0.535 5.535 14 Si 0.819 3.181 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.183 1.183 18 N -0.285 5.285 19 C -0.007 4.007 20 C -0.212 4.212 21 C -0.140 4.140 22 H 0.088 0.912 23 H 0.148 0.852 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.204 0.796 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.712 4.984 -3.242 9.738 hybrid contribution -0.971 -1.058 0.231 1.454 sum -8.683 3.926 -3.011 9.994 Atomic orbital electron populations 1.23619 0.74043 1.05813 1.02964 1.86613 1.25588 1.32089 1.83650 1.21230 0.88847 0.81514 0.72229 1.90721 1.67019 1.35810 1.46508 1.19141 0.88922 0.94531 1.03475 1.21434 0.92681 0.98945 1.09943 1.18678 0.88396 0.86779 0.95938 1.42563 1.04967 1.02167 1.63931 1.21083 0.80017 0.98959 0.99722 1.19858 1.08069 0.84946 1.33327 0.88470 1.26303 0.96712 1.04308 0.93823 1.70177 1.22034 1.34088 1.27177 0.84874 0.79221 0.76241 0.77797 1.19551 1.20573 1.18290 1.67039 1.41495 0.98039 1.21925 1.22679 0.89810 0.95909 0.92337 1.20606 0.95252 0.94739 1.10564 1.20586 0.99004 0.92423 1.01978 0.91199 0.85246 0.91473 0.85224 0.94826 0.93459 0.92679 0.91755 0.79643 0.92118 0.90043 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.88 9.93 -55.78 -0.55 -12.43 16 3 C 0.52 18.58 7.86 70.42 0.55 19.13 16 4 O -0.51 -18.17 13.32 20.04 0.27 -17.90 16 5 C -0.05 -2.07 5.90 -19.91 -0.12 -2.18 16 6 C -0.20 -9.05 8.85 22.82 0.20 -8.85 16 7 C 0.34 16.39 7.34 133.11 0.98 17.37 16 8 N -0.44 -23.00 3.11 -541.37 -1.68 -24.69 16 9 C 0.15 7.17 8.76 127.77 1.12 8.29 16 10 C -0.33 -17.40 8.80 84.05 0.74 -16.66 16 11 H 0.10 4.91 6.45 -2.91 -0.02 4.89 16 12 C -0.01 -0.45 5.10 84.88 0.43 -0.01 16 13 N -0.90 -47.82 10.87 21.65 0.24 -47.59 16 14 Si 1.00 39.82 29.57 68.60 2.03 41.85 16 15 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 16 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 N -0.56 -24.66 9.03 -193.40 -1.75 -26.41 16 19 C 0.15 5.49 10.82 84.66 0.92 6.40 16 20 C -0.20 -7.21 5.94 -19.46 -0.12 -7.33 16 21 C -0.08 -2.35 8.83 71.24 0.63 -1.72 16 22 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.13 5.94 6.00 -2.91 -0.02 5.93 16 26 H 0.03 1.75 7.51 -2.38 -0.02 1.73 16 27 H 0.05 2.36 7.26 -2.39 -0.02 2.34 16 28 H 0.05 2.49 7.27 -2.39 -0.02 2.47 16 29 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.19 4.92 8.06 -2.91 -0.02 4.89 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.79 8.05 -2.39 -0.02 1.78 16 33 H 0.07 2.01 5.96 -2.39 -0.01 2.00 16 Total: -1.00 -61.11 283.32 6.21 -54.90 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.13 Total: 16.02 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.53 Total: 16.25 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.19 Total: -98.68 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.29 Total: -30.34 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -61.11 6.21 -54.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.715 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds