Wall clock time and date at job start Thu Apr 9 2020 12:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47057 * 2 1 4 4 N 1.46499 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.39678 * 120.00186 * 180.02562 * 4 3 2 6 6 C 1.38165 * 119.98810 * 6.36002 * 5 4 3 7 7 C 1.41130 * 119.50561 * 180.02562 * 6 5 4 8 8 C 1.40358 * 120.25717 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00523 * 150.25237 * 8 7 6 10 10 C 1.46531 * 119.99751 * 330.25663 * 8 7 6 11 11 N 1.29516 * 119.99842 * 168.05337 * 10 8 7 12 12 Si 1.86798 * 120.00041 * 348.05102 * 10 8 7 13 13 H 1.48503 * 109.47223 * 92.76439 * 12 10 8 14 14 H 1.48497 * 109.47095 * 212.76721 * 12 10 8 15 15 H 1.48504 * 109.47180 * 332.76681 * 12 10 8 16 16 C 1.41343 * 119.49530 * 359.74028 * 7 6 5 17 17 C 1.36488 * 119.95922 * 0.51164 * 16 7 6 18 18 C 1.38672 * 120.49960 * 359.48282 * 17 16 7 19 19 N 1.48018 * 119.73748 * 180.25323 * 18 17 16 20 20 O 1.31699 * 120.00260 * 353.95518 * 19 18 17 21 21 O 1.31705 * 119.99575 * 173.95913 * 19 18 17 22 22 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47016 * 299.99233 * 1 2 3 24 24 H 1.09000 * 109.47459 * 59.99650 * 1 2 3 25 25 H 1.09008 * 109.46931 * 240.00390 * 2 1 3 26 26 H 1.09002 * 109.47463 * 120.00891 * 2 1 3 27 27 H 1.09005 * 109.47220 * 60.00828 * 3 2 1 28 28 H 1.08999 * 109.47998 * 300.00299 * 3 2 1 29 29 H 0.97000 * 120.00530 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.24783 * 359.97438 * 6 5 4 31 31 H 0.96997 * 119.99662 * 180.02562 * 11 10 8 32 32 H 1.07995 * 120.02019 * 180.29175 * 16 7 6 33 33 H 1.07995 * 119.75299 * 179.75081 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2033 2.6521 -0.0002 6 6 3.5187 3.8448 0.1334 7 6 4.2346 5.0610 0.1319 8 6 3.5550 6.2818 0.2660 9 1 4.0443 7.1239 0.7326 10 6 2.1814 6.4136 -0.2269 11 7 1.4740 7.4492 0.0963 12 14 1.4507 5.0880 -1.3216 13 1 0.7286 4.0969 -0.4841 14 1 0.5037 5.7069 -2.2835 15 1 2.5390 4.4064 -2.0675 16 6 5.6416 5.0403 -0.0006 17 6 6.2959 3.8502 -0.1363 18 6 5.5917 2.6556 -0.1348 19 7 6.3189 1.3743 -0.2775 20 8 7.6126 1.3753 -0.5243 21 8 5.6722 0.2333 -0.1578 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.9900 0.6025 -0.0013 30 1 2.4437 3.8463 0.2373 31 1 0.5646 7.5363 -0.2297 32 1 6.1983 5.9657 0.0020 33 1 7.3707 3.8384 -0.2414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168136378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:39 Heat of formation + Delta-G solvation = 21.559803 kcal Electronic energy + Delta-G solvation = -18249.452438 eV Core-core repulsion = 15278.418326 eV Total energy + Delta-G solvation = -2971.034111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16283 -36.98446 -36.15211 -34.30344 -33.33803 -32.54441 -31.20546 -28.75129 -26.97548 -25.53267 -23.65998 -22.25458 -20.73402 -20.66029 -18.39798 -17.42929 -16.80496 -16.06333 -15.50186 -15.38278 -15.05136 -14.66272 -13.97173 -13.69897 -13.27720 -13.11019 -12.98932 -12.64472 -12.24781 -11.89397 -11.55485 -11.41122 -11.01586 -10.98131 -10.85231 -10.75863 -10.24668 -9.97240 -9.84112 -9.67175 -9.64178 -9.41591 -8.39323 -7.82689 -7.02859 -5.28531 0.66264 2.28824 2.48956 2.66371 2.68366 2.84161 2.88341 3.45616 3.80441 3.94978 4.77936 4.97668 5.04021 5.31234 5.46415 5.64601 5.70916 5.75674 5.85306 5.98306 5.99083 6.18661 6.19753 6.22266 6.27511 6.38302 6.73711 6.85711 7.10029 7.24164 7.29856 7.42591 7.68315 7.94690 8.08761 8.17307 8.51838 9.07170 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.010612 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.117905 B = 2637.917650 C = 4265.619882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.734 5.734 5 C 0.311 3.689 6 C -0.332 4.332 7 C 0.110 3.890 8 C -0.349 4.349 9 H 0.109 0.891 10 C 0.070 3.930 11 N -0.729 5.729 12 Si 0.926 3.074 13 H -0.256 1.256 14 H -0.283 1.283 15 H -0.231 1.231 16 C -0.196 4.196 17 C -0.021 4.021 18 C -0.152 4.152 19 N 0.057 4.943 20 O -0.303 6.303 21 O -0.337 6.337 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.414 0.586 30 H 0.116 0.884 31 H 0.307 0.693 32 H 0.122 0.878 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -2.169 -0.808 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.380 5.380 5 C 0.201 3.799 6 C -0.359 4.359 7 C 0.105 3.895 8 C -0.374 4.374 9 H 0.127 0.873 10 C -0.163 4.163 11 N -0.347 5.347 12 Si 0.750 3.250 13 H -0.182 1.182 14 H -0.210 1.210 15 H -0.154 1.154 16 C -0.217 4.217 17 C -0.041 4.041 18 C -0.259 4.259 19 N 0.476 4.524 20 O -0.461 6.461 21 O -0.479 6.479 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.266 0.734 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.885 -1.945 -0.755 7.194 hybrid contribution -0.145 -0.910 -0.361 0.990 sum -7.030 -2.855 -1.116 7.669 Atomic orbital electron populations 1.21688 0.94945 1.01822 1.02139 1.21685 0.96289 0.96269 1.03010 1.21444 0.81502 0.96936 1.01045 1.46192 1.05422 1.07718 1.78699 1.17228 0.87544 0.87254 0.87871 1.20289 0.98584 0.89866 1.27127 1.17615 0.92053 0.92151 0.87719 1.21403 0.94315 0.97651 1.24039 0.87273 1.28078 0.96111 0.96703 0.95370 1.68949 1.10080 1.26165 1.29477 0.86063 0.79843 0.79375 0.79737 1.18191 1.21005 1.15365 1.20821 0.93947 0.96010 1.10970 1.19989 0.99406 0.89705 0.94953 1.19527 0.89354 0.81264 1.35768 1.49893 1.02224 1.03233 0.97056 1.96119 0.92650 1.96248 1.61116 1.95681 1.66807 1.18277 1.67121 0.92329 0.92432 0.92568 0.91286 0.91195 0.92246 0.92829 0.73374 0.86640 0.88061 0.86020 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.13 -1.79 6.05 -26.74 -0.16 -1.95 16 3 C 0.12 1.92 4.96 -4.04 -0.02 1.90 16 4 N -0.73 -14.82 5.62 -58.68 -0.33 -15.15 16 5 C 0.31 6.93 6.63 -83.85 -0.56 6.37 16 6 C -0.33 -7.17 6.36 -38.51 -0.24 -7.41 16 7 C 0.11 2.36 5.24 -106.82 -0.56 1.80 16 8 C -0.35 -7.47 9.87 -35.44 -0.35 -7.82 16 9 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 10 C 0.07 1.44 5.64 -15.19 -0.09 1.36 16 11 N -0.73 -14.89 13.89 55.98 0.78 -14.11 16 12 Si 0.93 17.00 23.90 -169.99 -4.06 12.94 16 13 H -0.26 -4.47 6.67 56.52 0.38 -4.09 16 14 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 15 H -0.23 -4.59 6.63 56.52 0.37 -4.22 16 16 C -0.20 -3.95 9.76 -39.03 -0.38 -4.33 16 17 C -0.02 -0.44 9.50 -40.05 -0.38 -0.82 16 18 C -0.15 -3.56 6.92 -79.32 -0.55 -4.11 16 19 N 0.06 1.44 4.98 34.27 0.17 1.61 16 20 O -0.30 -7.80 19.14 -31.57 -0.60 -8.41 16 21 O -0.34 -8.39 16.29 -31.57 -0.51 -8.90 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 28 H 0.05 0.90 7.43 -51.93 -0.39 0.51 16 29 H 0.41 8.62 4.67 -42.10 -0.20 8.42 16 30 H 0.12 2.38 2.98 -52.49 -0.16 2.22 16 31 H 0.31 5.48 8.27 -40.82 -0.34 5.15 16 32 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.13 2.48 7.56 -52.49 -0.40 2.09 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -25.91 280.51 -6.93 -32.85 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -3.68 Total: 11.18 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.92 Total: -16.25 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.62 Total: -27.64 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.12 Total: -17.31 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -4.06 Total: 12.94 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.91 -6.93 -32.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168136378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.408 kcal (2) G-P(sol) polarization free energy of solvation -25.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds