Wall clock time and date at job start Thu Apr 9 2020 12:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47057 * 2 1 4 4 N 1.46499 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.39678 * 120.00186 * 180.02562 * 4 3 2 6 6 C 1.38165 * 119.98810 * 6.36002 * 5 4 3 7 7 C 1.41130 * 119.50561 * 180.02562 * 6 5 4 8 8 C 1.40358 * 120.25717 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00523 * 150.25237 * 8 7 6 10 10 C 1.46531 * 119.99751 * 330.25663 * 8 7 6 11 11 N 1.29516 * 119.99842 * 168.05337 * 10 8 7 12 12 Si 1.86798 * 120.00041 * 348.05102 * 10 8 7 13 13 H 1.48503 * 109.47223 * 92.76439 * 12 10 8 14 14 H 1.48497 * 109.47095 * 212.76721 * 12 10 8 15 15 H 1.48504 * 109.47180 * 332.76681 * 12 10 8 16 16 C 1.41343 * 119.49530 * 359.74028 * 7 6 5 17 17 C 1.36488 * 119.95922 * 0.51164 * 16 7 6 18 18 C 1.38672 * 120.49960 * 359.48282 * 17 16 7 19 19 N 1.48018 * 119.73748 * 180.25323 * 18 17 16 20 20 O 1.31699 * 120.00260 * 353.95518 * 19 18 17 21 21 O 1.31705 * 119.99575 * 173.95913 * 19 18 17 22 22 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47016 * 299.99233 * 1 2 3 24 24 H 1.09000 * 109.47459 * 59.99650 * 1 2 3 25 25 H 1.09008 * 109.46931 * 240.00390 * 2 1 3 26 26 H 1.09002 * 109.47463 * 120.00891 * 2 1 3 27 27 H 1.09005 * 109.47220 * 60.00828 * 3 2 1 28 28 H 1.08999 * 109.47998 * 300.00299 * 3 2 1 29 29 H 0.97000 * 120.00530 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.24783 * 359.97438 * 6 5 4 31 31 H 0.96997 * 119.99662 * 180.02562 * 11 10 8 32 32 H 1.07995 * 120.02019 * 180.29175 * 16 7 6 33 33 H 1.07995 * 119.75299 * 179.75081 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2033 2.6521 -0.0002 6 6 3.5187 3.8448 0.1334 7 6 4.2346 5.0610 0.1319 8 6 3.5550 6.2818 0.2660 9 1 4.0443 7.1239 0.7326 10 6 2.1814 6.4136 -0.2269 11 7 1.4740 7.4492 0.0963 12 14 1.4507 5.0880 -1.3216 13 1 0.7286 4.0969 -0.4841 14 1 0.5037 5.7069 -2.2835 15 1 2.5390 4.4064 -2.0675 16 6 5.6416 5.0403 -0.0006 17 6 6.2959 3.8502 -0.1363 18 6 5.5917 2.6556 -0.1348 19 7 6.3189 1.3743 -0.2775 20 8 7.6126 1.3753 -0.5243 21 8 5.6722 0.2333 -0.1578 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.9900 0.6025 -0.0013 30 1 2.4437 3.8463 0.2373 31 1 0.5646 7.5363 -0.2297 32 1 6.1983 5.9657 0.0020 33 1 7.3707 3.8384 -0.2414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168136378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:38 Heat of formation + Delta-G solvation = 7.078959 kcal Electronic energy + Delta-G solvation = -18250.080374 eV Core-core repulsion = 15278.418326 eV Total energy + Delta-G solvation = -2971.662048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82569 -38.69809 -37.58923 -35.95145 -34.94659 -33.99962 -32.87419 -30.26816 -28.71381 -26.85244 -25.36135 -23.63829 -22.29958 -22.11725 -20.04857 -19.12308 -18.56657 -17.67751 -17.05693 -16.67286 -16.56456 -16.31298 -15.56806 -15.20229 -14.87013 -14.51870 -14.39747 -13.86191 -13.70323 -13.17463 -13.01166 -12.84645 -12.64304 -12.32017 -12.09580 -11.93875 -11.78582 -11.75629 -11.55154 -11.39319 -11.35327 -10.98209 -10.10179 -9.46314 -8.66361 -6.99406 -1.18033 0.60488 0.87639 0.95055 1.19529 1.36044 1.39923 1.98411 2.17446 2.46483 3.08821 3.76992 3.87392 3.97042 4.19506 4.28158 4.35885 4.52904 4.53666 4.59086 4.62974 4.73438 4.82772 5.06870 5.07410 5.16086 5.20041 5.32529 5.41579 5.55256 5.59083 5.76938 6.03480 6.24138 6.38670 6.45557 6.87483 7.47414 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.010612 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.117905 B = 2637.917650 C = 4265.619882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.108 3.892 4 N -0.734 5.734 5 C 0.292 3.708 6 C -0.332 4.332 7 C 0.085 3.915 8 C -0.325 4.325 9 H 0.112 0.888 10 C 0.050 3.950 11 N -0.728 5.728 12 Si 0.955 3.045 13 H -0.240 1.240 14 H -0.263 1.263 15 H -0.256 1.256 16 C -0.168 4.168 17 C -0.044 4.044 18 C -0.147 4.147 19 N 0.055 4.945 20 O -0.371 6.371 21 O -0.375 6.375 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.410 0.590 30 H 0.127 0.873 31 H 0.325 0.675 32 H 0.152 0.848 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -0.145 -0.724 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C -0.016 4.016 4 N -0.378 5.378 5 C 0.181 3.819 6 C -0.360 4.360 7 C 0.079 3.921 8 C -0.350 4.350 9 H 0.130 0.870 10 C -0.184 4.184 11 N -0.346 5.346 12 Si 0.777 3.223 13 H -0.165 1.165 14 H -0.189 1.189 15 H -0.180 1.180 16 C -0.190 4.190 17 C -0.064 4.064 18 C -0.259 4.259 19 N 0.452 4.548 20 O -0.511 6.511 21 O -0.507 6.507 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.261 0.739 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.170 0.830 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.612 -0.051 -0.686 9.636 hybrid contribution 0.333 -0.972 -0.322 1.077 sum -9.278 -1.023 -1.008 9.389 Atomic orbital electron populations 1.21683 0.92618 1.03235 1.02634 1.21690 0.98172 0.94033 1.02965 1.21729 0.79405 0.99286 1.01178 1.46411 1.06978 1.06955 1.77506 1.17446 0.87439 0.88340 0.88696 1.20392 0.99099 0.89555 1.26951 1.17815 0.92752 0.92263 0.89222 1.21717 0.94832 0.97348 1.21099 0.87021 1.28468 0.95984 0.97848 0.96103 1.68892 1.11127 1.25930 1.28659 0.85622 0.79299 0.78290 0.79082 1.16486 1.18891 1.17987 1.21167 0.93597 0.96688 1.07533 1.20159 1.00030 0.89456 0.96736 1.20089 0.90199 0.81387 1.34215 1.49948 1.02058 1.03501 0.99260 1.96068 0.93575 1.96357 1.65143 1.95625 1.66796 1.19053 1.69188 0.90543 0.91865 0.92107 0.91539 0.91165 0.91747 0.92700 0.73891 0.85610 0.86138 0.82998 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.13 -3.29 6.05 30.59 0.19 -3.10 16 3 C 0.11 3.43 4.96 86.38 0.43 3.85 16 4 N -0.73 -29.66 5.62 -339.56 -1.91 -31.56 16 5 C 0.29 12.94 6.63 38.17 0.25 13.20 16 6 C -0.33 -13.74 6.36 22.96 0.15 -13.60 16 7 C 0.08 3.43 5.24 -21.29 -0.11 3.31 16 8 C -0.33 -12.74 9.87 24.95 0.25 -12.49 16 9 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 10 C 0.05 1.84 5.64 87.20 0.49 2.33 16 11 N -0.73 -26.60 13.89 23.21 0.32 -26.27 16 12 Si 0.96 31.39 23.90 68.60 1.64 33.03 16 13 H -0.24 -7.30 6.67 99.48 0.66 -6.64 16 14 H -0.26 -7.87 7.11 99.48 0.71 -7.16 16 15 H -0.26 -9.58 6.63 99.48 0.66 -8.92 16 16 C -0.17 -6.41 9.76 22.63 0.22 -6.19 16 17 C -0.04 -1.86 9.50 21.96 0.21 -1.65 16 18 C -0.15 -6.97 6.92 36.78 0.25 -6.72 16 19 N 0.05 2.90 4.98 -45.50 -0.23 2.67 16 20 O -0.37 -20.51 19.14 3.52 0.07 -20.44 16 21 O -0.37 -19.74 16.29 3.51 0.06 -19.68 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.98 7.70 -2.38 -0.02 1.96 16 28 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 29 H 0.41 17.53 4.67 -112.98 -0.53 17.00 16 30 H 0.13 4.84 2.98 -2.91 -0.01 4.83 16 31 H 0.32 10.12 8.27 -92.71 -0.77 9.35 16 32 H 0.15 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.13 5.38 7.56 -2.91 -0.02 5.36 16 Total: -1.00 -55.48 280.51 3.51 -51.97 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.53 Total: 33.35 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.04 Total: -23.05 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.81 Total: -55.17 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: 0.12 Total: -40.12 kcal Atomic # 14 Polarization: 31.39 SS G_CDS: 1.64 Total: 33.03 kcal Total: -55.48 3.51 -51.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168136378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.044 kcal (2) G-P(sol) polarization free energy of solvation -55.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds