Wall clock time and date at job start Thu Apr 9 2020 12:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46556 * 2 1 4 4 C 1.53000 * 109.47152 * 240.00042 * 2 1 3 5 5 C 1.50696 * 109.47085 * 174.27674 * 4 2 1 6 6 C 1.38254 * 120.00538 * 101.74464 * 5 4 2 7 7 C 1.38210 * 119.99979 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.00247 * 359.95412 * 7 6 5 9 9 C 1.38213 * 120.00033 * 359.97438 * 8 7 6 10 10 C 1.38217 * 119.99590 * 281.91198 * 5 4 2 11 11 N 1.48018 * 120.00297 * 0.03646 * 10 5 4 12 12 O 1.21803 * 120.00411 * 175.87612 * 11 10 5 13 13 O 1.21805 * 119.99977 * 355.88094 * 11 10 5 14 14 N 1.46503 * 109.47017 * 119.99643 * 2 1 3 15 15 C 1.36930 * 119.99860 * 278.00847 * 14 2 1 16 16 H 1.08002 * 120.00376 * 0.02562 * 15 14 2 17 17 C 1.38813 * 120.00084 * 180.02562 * 15 14 2 18 18 N 1.31628 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47176 * 59.99861 * 19 17 15 21 21 H 1.48502 * 109.47401 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46857 * 300.00250 * 19 17 15 23 23 H 1.08998 * 109.47423 * 300.00105 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00759 * 1 2 3 25 25 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47128 * 54.27008 * 4 2 1 27 27 H 1.09007 * 109.47110 * 294.27029 * 4 2 1 28 28 H 1.07999 * 120.00033 * 359.97438 * 6 5 4 29 29 H 1.08005 * 119.99881 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.99932 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.99919 * 180.02562 * 9 8 7 32 32 H 0.96996 * 119.99581 * 98.01236 * 14 2 1 33 33 H 0.97001 * 119.99930 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5403 -0.5997 -1.3221 6 6 4.3392 -1.6634 -0.9455 7 6 5.7152 -1.5516 -1.0119 8 6 6.2927 -0.3765 -1.4558 9 6 5.4941 0.6864 -1.8337 10 6 4.1177 0.5764 -1.7622 11 7 3.2626 1.7168 -2.1611 12 8 3.7706 2.7778 -2.4771 13 8 2.0507 1.5943 -2.1733 14 7 2.0183 -0.6906 1.1962 15 6 2.0908 -0.0238 2.3900 16 1 1.7875 1.0111 2.4499 17 6 2.5539 -0.6779 3.5234 18 7 2.9240 -1.9390 3.4504 19 14 2.6521 0.2314 5.1521 20 1 1.2979 0.7028 5.5383 21 1 3.1757 -0.6828 6.1988 22 1 3.5614 1.3973 5.0141 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.5953 -0.2701 -2.1363 27 1 1.7629 -1.7743 -1.1994 28 1 3.8881 -2.5813 -0.5987 29 1 6.3393 -2.3824 -0.7173 30 1 7.3679 -0.2893 -1.5080 31 1 5.9452 1.6042 -2.1808 32 1 2.2904 -1.6200 1.1425 33 1 3.2473 -2.3962 4.2424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254533140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:47 Heat of formation + Delta-G solvation = 30.911974 kcal Electronic energy + Delta-G solvation = -18601.906657 eV Core-core repulsion = 15631.278086 eV Total energy + Delta-G solvation = -2970.628571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93938 -39.29992 -36.63023 -35.70918 -32.84269 -31.68965 -31.18630 -28.66227 -26.87243 -25.52625 -23.73975 -22.41329 -21.83318 -19.96825 -18.68721 -18.25249 -17.24781 -17.17114 -16.08633 -15.46440 -14.67045 -14.57036 -13.81525 -13.66349 -13.59333 -12.84169 -12.37528 -12.18883 -11.95079 -11.86157 -11.43019 -11.07785 -10.99921 -10.87381 -10.82027 -10.62356 -10.36921 -10.15699 -10.05643 -9.64548 -9.35585 -8.93074 -8.79894 -6.97271 -5.79144 -3.06506 0.17938 1.19620 1.66571 1.78565 3.42487 3.46573 3.48190 3.52845 4.56442 4.57747 4.62404 4.87303 5.10001 5.16433 5.37310 5.53347 5.54596 5.70873 5.79293 5.94322 5.99508 6.16300 6.24475 6.29990 6.40270 6.45699 6.54628 6.70611 6.89513 6.95281 7.12496 7.69635 8.02347 8.40191 9.51501 10.07771 10.43791 11.43599 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.008052 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.358959 B = 3476.731388 C = 3951.698425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.044 0.956 4 C -0.109 4.109 5 C 0.016 3.984 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.133 4.133 9 C -0.059 4.059 10 C -0.049 4.049 11 N 0.037 4.963 12 O -0.188 6.188 13 O -0.150 6.150 14 N -0.726 5.726 15 C -0.233 4.233 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.935 5.935 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.381 0.619 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -0.034 -12.143 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.076 3.924 3 H 0.062 0.938 4 C -0.147 4.147 5 C 0.015 3.985 6 C -0.122 4.122 7 C -0.080 4.080 8 C -0.152 4.152 9 C -0.079 4.079 10 C -0.132 4.132 11 N 0.553 4.447 12 O -0.397 6.397 13 O -0.367 6.367 14 N -0.368 5.368 15 C -0.365 4.365 16 H 0.085 0.915 17 C -0.209 4.209 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.214 1.214 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.215 0.785 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.321 -0.414 -11.820 12.969 hybrid contribution 0.022 0.473 1.066 1.166 sum 5.343 0.059 -10.754 12.009 Atomic orbital electron populations 1.22331 0.98236 1.00777 1.00546 1.20103 0.92447 0.95013 0.84813 0.93832 1.21502 0.88419 1.02772 1.01970 1.19895 0.98363 0.90158 0.90099 1.21183 0.93197 0.99044 0.98725 1.21571 0.95251 0.97686 0.93520 1.21069 1.00231 0.92724 1.01180 1.20919 0.90382 1.00262 0.96295 1.20909 0.90859 0.88197 1.13231 1.43561 1.01478 1.01923 0.97753 1.94484 1.77527 1.15633 1.52045 1.94477 0.96659 1.88940 1.56620 1.42482 1.77557 1.12430 1.04334 1.19173 1.35674 0.95079 0.86547 0.91450 1.24677 1.02202 0.96151 0.97829 1.69636 1.50347 1.09613 1.28768 0.86313 0.77789 0.78551 0.83857 1.21227 1.21696 1.21416 0.92769 0.93587 0.93578 0.87826 0.90523 0.83679 0.84421 0.84252 0.83656 0.78496 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.45 37.16 0.35 -2.66 16 2 C 0.19 3.81 2.26 -67.93 -0.15 3.66 16 3 H 0.04 0.99 6.69 -51.93 -0.35 0.64 16 4 C -0.11 -1.83 4.15 -27.88 -0.12 -1.95 16 5 C 0.02 0.27 4.89 -104.63 -0.51 -0.24 16 6 C -0.10 -1.53 9.67 -39.59 -0.38 -1.92 16 7 C -0.06 -0.78 10.05 -39.58 -0.40 -1.17 16 8 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 9 C -0.06 -0.82 9.56 -39.58 -0.38 -1.20 16 10 C -0.05 -0.81 6.76 -79.95 -0.54 -1.35 16 11 N 0.04 0.67 4.38 33.96 0.15 0.82 16 12 O -0.19 -3.39 18.46 -29.46 -0.54 -3.93 16 13 O -0.15 -2.75 13.67 -29.46 -0.40 -3.15 16 14 N -0.73 -17.84 4.88 -53.42 -0.26 -18.10 16 15 C -0.23 -6.50 9.90 -15.06 -0.15 -6.65 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 19 Si 0.90 22.58 29.55 -169.99 -5.02 17.55 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.64 5.90 -51.93 -0.31 1.34 16 27 H 0.08 1.19 7.99 -51.93 -0.41 0.77 16 28 H 0.15 2.05 8.02 -52.49 -0.42 1.63 16 29 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.15 1.75 7.62 -52.49 -0.40 1.35 16 32 H 0.38 9.64 7.77 -40.82 -0.32 9.32 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -31.17 288.23 -7.65 -38.82 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.87 Total: 6.29 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.77 Total: -15.91 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.61 Total: -44.02 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.95 Total: -7.08 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.17 -7.65 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254533140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.737 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds