Wall clock time and date at job start Thu Apr 9 2020 12:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46556 * 2 1 4 4 C 1.53000 * 109.47152 * 240.00042 * 2 1 3 5 5 C 1.50696 * 109.47085 * 174.27674 * 4 2 1 6 6 C 1.38254 * 120.00538 * 101.74464 * 5 4 2 7 7 C 1.38210 * 119.99979 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.00247 * 359.95412 * 7 6 5 9 9 C 1.38213 * 120.00033 * 359.97438 * 8 7 6 10 10 C 1.38217 * 119.99590 * 281.91198 * 5 4 2 11 11 N 1.48018 * 120.00297 * 0.03646 * 10 5 4 12 12 O 1.21803 * 120.00411 * 175.87612 * 11 10 5 13 13 O 1.21805 * 119.99977 * 355.88094 * 11 10 5 14 14 N 1.46503 * 109.47017 * 119.99643 * 2 1 3 15 15 C 1.36930 * 119.99860 * 278.00847 * 14 2 1 16 16 H 1.08002 * 120.00376 * 0.02562 * 15 14 2 17 17 C 1.38813 * 120.00084 * 180.02562 * 15 14 2 18 18 N 1.31628 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47176 * 59.99861 * 19 17 15 21 21 H 1.48502 * 109.47401 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46857 * 300.00250 * 19 17 15 23 23 H 1.08998 * 109.47423 * 300.00105 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00759 * 1 2 3 25 25 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47128 * 54.27008 * 4 2 1 27 27 H 1.09007 * 109.47110 * 294.27029 * 4 2 1 28 28 H 1.07999 * 120.00033 * 359.97438 * 6 5 4 29 29 H 1.08005 * 119.99881 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.99932 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.99919 * 180.02562 * 9 8 7 32 32 H 0.96996 * 119.99581 * 98.01236 * 14 2 1 33 33 H 0.97001 * 119.99930 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5403 -0.5997 -1.3221 6 6 4.3392 -1.6634 -0.9455 7 6 5.7152 -1.5516 -1.0119 8 6 6.2927 -0.3765 -1.4558 9 6 5.4941 0.6864 -1.8337 10 6 4.1177 0.5764 -1.7622 11 7 3.2626 1.7168 -2.1611 12 8 3.7706 2.7778 -2.4771 13 8 2.0507 1.5943 -2.1733 14 7 2.0183 -0.6906 1.1962 15 6 2.0908 -0.0238 2.3900 16 1 1.7875 1.0111 2.4499 17 6 2.5539 -0.6779 3.5234 18 7 2.9240 -1.9390 3.4504 19 14 2.6521 0.2314 5.1521 20 1 1.2979 0.7028 5.5383 21 1 3.1757 -0.6828 6.1988 22 1 3.5614 1.3973 5.0141 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.5953 -0.2701 -2.1363 27 1 1.7629 -1.7743 -1.1994 28 1 3.8881 -2.5813 -0.5987 29 1 6.3393 -2.3824 -0.7173 30 1 7.3679 -0.2893 -1.5080 31 1 5.9452 1.6042 -2.1808 32 1 2.2904 -1.6200 1.1425 33 1 3.2473 -2.3962 4.2424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254533140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:47 Heat of formation + Delta-G solvation = 13.199590 kcal Electronic energy + Delta-G solvation = -18602.674724 eV Core-core repulsion = 15631.278086 eV Total energy + Delta-G solvation = -2971.396637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.26812 -40.46041 -38.07594 -37.28187 -34.61295 -32.94026 -32.58848 -30.49072 -28.19448 -26.83321 -25.74204 -23.61457 -23.06730 -21.58321 -19.94805 -19.60711 -19.24991 -18.54208 -17.18991 -16.91130 -16.32263 -15.77484 -15.48305 -15.40405 -14.83855 -14.33909 -13.77387 -13.57088 -13.41064 -13.18984 -12.98423 -12.80253 -12.60086 -12.44558 -12.30455 -12.26929 -12.08072 -11.77650 -11.73880 -11.43153 -10.96980 -10.46109 -9.96341 -9.00335 -7.95173 -5.21415 -1.07973 0.11845 0.42322 0.53934 1.43761 1.44887 1.51083 2.43763 2.53816 3.36574 3.46844 3.48151 3.84184 3.95526 4.05017 4.15742 4.20106 4.31828 4.51615 4.60159 4.75461 4.85249 4.94287 4.97212 5.11788 5.13704 5.24839 5.34017 5.36579 5.50920 5.53223 5.69688 6.27806 6.64356 7.34977 8.08418 8.36836 9.27121 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.008052 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.358959 B = 3476.731388 C = 3951.698425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.185 3.815 3 H 0.019 0.981 4 C -0.099 4.099 5 C -0.007 4.007 6 C -0.119 4.119 7 C -0.055 4.055 8 C -0.119 4.119 9 C -0.065 4.065 10 C -0.072 4.072 11 N 0.037 4.963 12 O -0.197 6.197 13 O -0.171 6.171 14 N -0.729 5.729 15 C -0.239 4.239 16 H 0.059 0.941 17 C -0.064 4.064 18 N -0.959 5.959 19 Si 0.960 3.040 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.377 0.623 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -0.394 -12.442 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.077 3.923 3 H 0.037 0.963 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.073 4.073 8 C -0.138 4.138 9 C -0.084 4.084 10 C -0.156 4.156 11 N 0.549 4.451 12 O -0.405 6.405 13 O -0.385 6.385 14 N -0.371 5.371 15 C -0.371 4.371 16 H 0.077 0.923 17 C -0.257 4.257 18 N -0.609 5.609 19 Si 0.790 3.210 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.189 0.811 30 H 0.200 0.800 31 H 0.179 0.821 32 H 0.210 0.790 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.794 -0.748 -12.151 13.941 hybrid contribution -0.369 0.579 1.102 1.298 sum 6.425 -0.169 -11.049 12.782 Atomic orbital electron populations 1.22225 0.97027 1.01236 1.00698 1.20172 0.93204 0.93826 0.85098 0.96263 1.21333 0.89303 1.02877 1.00166 1.19949 0.98175 0.90980 0.91733 1.21390 0.94529 0.98739 0.99118 1.22040 0.94513 0.98983 0.91756 1.21595 1.02115 0.91320 0.98732 1.21321 0.89366 1.01738 0.95948 1.21205 0.91802 0.87678 1.14896 1.43838 1.01575 1.02303 0.97379 1.94453 1.77449 1.16313 1.52322 1.94450 0.97345 1.89179 1.57525 1.42539 1.77735 1.12209 1.04654 1.19382 1.34816 0.94891 0.87971 0.92297 1.25320 1.02788 0.97016 1.00563 1.69753 1.51407 1.10580 1.29165 0.85418 0.77696 0.77456 0.80436 1.20897 1.21612 1.21176 0.94842 0.91166 0.92905 0.87059 0.89371 0.83548 0.81083 0.79993 0.82058 0.79023 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 9.45 71.98 0.68 -5.07 16 2 C 0.19 7.66 2.26 44.99 0.10 7.76 16 3 H 0.02 0.90 6.69 -2.39 -0.02 0.88 16 4 C -0.10 -3.32 4.15 29.85 0.12 -3.20 16 5 C -0.01 -0.22 4.89 -19.87 -0.10 -0.32 16 6 C -0.12 -3.38 9.67 22.27 0.22 -3.16 16 7 C -0.06 -1.20 10.05 22.27 0.22 -0.98 16 8 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 9 C -0.06 -1.65 9.56 22.27 0.21 -1.44 16 10 C -0.07 -2.35 6.76 36.38 0.25 -2.10 16 11 N 0.04 1.35 4.38 -46.46 -0.20 1.14 16 12 O -0.20 -7.09 18.46 18.88 0.35 -6.75 16 13 O -0.17 -6.38 13.67 18.88 0.26 -6.12 16 14 N -0.73 -36.10 4.88 -322.94 -1.58 -37.68 16 15 C -0.24 -13.37 9.90 84.03 0.83 -12.53 16 16 H 0.06 3.33 7.83 -2.91 -0.02 3.31 16 17 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 18 N -0.96 -56.21 13.06 21.65 0.28 -55.92 16 19 Si 0.96 46.33 29.55 68.60 2.03 48.36 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.11 3.51 5.90 -2.39 -0.01 3.50 16 27 H 0.09 2.69 7.99 -2.38 -0.02 2.67 16 28 H 0.15 4.01 8.02 -2.91 -0.02 3.98 16 29 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.16 3.51 7.62 -2.91 -0.02 3.49 16 32 H 0.38 19.15 7.77 -92.71 -0.72 18.43 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -66.82 288.23 4.77 -62.05 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.41 Total: 21.24 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.23 Total: -26.33 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.50 Total: -92.45 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.61 Total: -12.87 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -66.82 4.77 -62.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254533140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.251 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds