Wall clock time and date at job start Thu Apr 9 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 C 1.52999 * 109.47174 * 119.99588 * 2 1 3 5 5 C 1.50695 * 109.47393 * 184.99738 * 4 2 1 6 6 C 1.38255 * 120.00536 * 257.38981 * 5 4 2 7 7 C 1.38217 * 120.00015 * 179.78798 * 6 5 4 8 8 C 1.38252 * 119.99997 * 0.46119 * 7 6 5 9 9 C 1.38220 * 120.00054 * 359.76977 * 8 7 6 10 10 C 1.38217 * 119.99534 * 77.65880 * 5 4 2 11 11 N 1.48020 * 120.00134 * 359.97438 * 10 5 4 12 12 O 1.21802 * 119.99954 * 185.61647 * 11 10 5 13 13 O 1.21802 * 119.99960 * 5.60710 * 11 10 5 14 14 N 1.46503 * 109.47341 * 240.00076 * 2 1 3 15 15 C 1.36931 * 120.00058 * 84.72247 * 14 2 1 16 16 H 1.07998 * 119.99942 * 0.27781 * 15 14 2 17 17 C 1.38807 * 120.00131 * 180.27477 * 15 14 2 18 18 N 1.31625 * 119.99892 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00238 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47093 * 60.00346 * 19 17 15 21 21 H 1.48506 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47092 * 300.00101 * 19 17 15 23 23 H 1.08995 * 109.47204 * 300.00354 * 1 2 3 24 24 H 1.09000 * 109.46987 * 60.00345 * 1 2 3 25 25 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47058 * 305.00772 * 4 2 1 27 27 H 1.09007 * 109.46900 * 65.00264 * 4 2 1 28 28 H 1.07998 * 119.99946 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.99713 * 180.25634 * 7 6 5 30 30 H 1.08003 * 120.00302 * 179.78921 * 8 7 6 31 31 H 1.08000 * 120.00053 * 180.02562 * 9 8 7 32 32 H 0.96996 * 119.99720 * 265.00016 * 14 2 1 33 33 H 0.97005 * 119.99964 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 6 4.3272 -1.6944 0.9531 7 6 5.7047 -1.5954 1.0072 8 6 6.2972 -0.4200 1.4300 9 6 5.5121 0.6577 1.7942 10 6 4.1342 0.5601 1.7359 11 7 3.2933 1.7141 2.1261 12 8 3.8129 2.7810 2.4006 13 8 2.0819 1.5968 2.1726 14 7 2.0184 -0.6906 -1.1962 15 6 2.1438 -0.0089 -2.3771 16 1 1.8869 1.0390 -2.4256 17 6 2.6011 -0.6646 -3.5118 18 7 2.9137 -1.9418 -3.4528 19 14 2.7715 0.2652 -5.1230 20 1 3.7275 1.3880 -4.9479 21 1 3.2750 -0.6547 -6.1746 22 1 1.4471 0.8012 -5.5277 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6053 -0.2617 2.1369 27 1 1.7516 -1.7715 1.2056 28 1 3.8643 -2.6141 0.6270 29 1 6.3182 -2.4373 0.7222 30 1 7.3736 -0.3437 1.4755 31 1 5.9749 1.5760 2.1241 32 1 2.2491 -1.6317 -1.1526 33 1 3.2337 -2.4000 -4.2457 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254533141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:50 Heat of formation + Delta-G solvation = 30.861203 kcal Electronic energy + Delta-G solvation = -18615.608378 eV Core-core repulsion = 15644.977605 eV Total energy + Delta-G solvation = -2970.630772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.93257 -39.28878 -36.62298 -35.70745 -32.84069 -31.68151 -31.18589 -28.66895 -26.86895 -25.51772 -23.73235 -22.40701 -21.83006 -19.98093 -18.67867 -18.24771 -17.25096 -17.16687 -16.08109 -15.44940 -14.66755 -14.56148 -13.82201 -13.65532 -13.58298 -12.83667 -12.36708 -12.20240 -11.95555 -11.86263 -11.43460 -11.07047 -10.99201 -10.86984 -10.82090 -10.62848 -10.36010 -10.14986 -10.05662 -9.65270 -9.34652 -8.94167 -8.78736 -6.97874 -5.79400 -3.06827 0.19020 1.20803 1.67238 1.79528 3.42271 3.46374 3.48006 3.53859 4.56728 4.58379 4.63189 4.88030 5.11010 5.17323 5.38135 5.53615 5.54349 5.71218 5.80069 5.94886 5.99837 6.16715 6.25025 6.29917 6.40363 6.45628 6.54835 6.70253 6.89759 6.94859 7.11452 7.69186 8.03071 8.39824 9.51190 10.07409 10.43438 11.43257 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.008152 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.739935 B = 3434.124122 C = 3892.083691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.185 3.815 3 H 0.045 0.955 4 C -0.110 4.110 5 C 0.018 3.982 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.134 4.134 9 C -0.059 4.059 10 C -0.049 4.049 11 N 0.038 4.962 12 O -0.187 6.187 13 O -0.150 6.150 14 N -0.725 5.725 15 C -0.234 4.234 16 H 0.067 0.933 17 C -0.012 4.012 18 N -0.934 5.934 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.381 0.619 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 -0.124 12.126 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.076 3.924 3 H 0.063 0.937 4 C -0.148 4.148 5 C 0.017 3.983 6 C -0.122 4.122 7 C -0.080 4.080 8 C -0.152 4.152 9 C -0.078 4.078 10 C -0.132 4.132 11 N 0.553 4.447 12 O -0.397 6.397 13 O -0.368 6.368 14 N -0.367 5.367 15 C -0.365 4.365 16 H 0.085 0.915 17 C -0.208 4.208 18 N -0.583 5.583 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.212 1.212 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.215 0.785 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.263 -0.509 11.805 12.936 hybrid contribution 0.045 0.482 -1.073 1.177 sum 5.308 -0.028 10.733 11.974 Atomic orbital electron populations 1.22340 0.98272 1.00772 1.00553 1.20109 0.92401 0.95066 0.84872 0.93674 1.21526 0.88409 1.02817 1.02035 1.19879 0.98304 0.90153 0.90013 1.21174 0.93308 0.98853 0.98849 1.21565 0.95149 0.97814 0.93476 1.21063 1.00266 0.92583 1.01332 1.20917 0.90452 1.00230 0.96223 1.20904 0.91047 0.87773 1.13493 1.43560 1.01419 1.02008 0.97686 1.94485 1.76649 1.15363 1.53170 1.94471 0.96617 1.89654 1.56028 1.42477 1.78346 1.10588 1.05316 1.19175 1.36300 0.93805 0.87245 0.91482 1.24673 1.02324 0.95965 0.97853 1.69637 1.51338 1.08524 1.28817 0.86318 0.77865 0.78623 0.83732 1.21408 1.21689 1.21229 0.93587 0.92775 0.93583 0.87794 0.90560 0.83729 0.84444 0.84267 0.83674 0.78484 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 2 C 0.19 3.80 2.29 -67.93 -0.16 3.65 16 3 H 0.05 1.02 6.65 -51.93 -0.35 0.68 16 4 C -0.11 -1.85 4.17 -27.89 -0.12 -1.97 16 5 C 0.02 0.30 4.88 -104.63 -0.51 -0.21 16 6 C -0.10 -1.54 9.67 -39.58 -0.38 -1.92 16 7 C -0.06 -0.78 10.05 -39.58 -0.40 -1.18 16 8 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 9 C -0.06 -0.82 9.56 -39.58 -0.38 -1.20 16 10 C -0.05 -0.81 6.75 -79.95 -0.54 -1.35 16 11 N 0.04 0.68 4.35 33.96 0.15 0.83 16 12 O -0.19 -3.40 18.46 -29.46 -0.54 -3.95 16 13 O -0.15 -2.77 13.71 -29.46 -0.40 -3.17 16 14 N -0.73 -17.82 4.84 -53.43 -0.26 -18.08 16 15 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 19 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.65 5.89 -51.93 -0.31 1.34 16 27 H 0.08 1.18 7.98 -51.92 -0.41 0.76 16 28 H 0.14 2.04 8.02 -52.49 -0.42 1.62 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.15 1.76 7.62 -52.49 -0.40 1.36 16 32 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -31.16 288.24 -7.65 -38.81 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.86 Total: 6.33 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.77 Total: -15.96 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.61 Total: -43.98 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.95 Total: -7.11 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.16 -7.65 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254533141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.670 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds