Wall clock time and date at job start Thu Apr 9 2020 12:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47429 * 240.00131 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00044 * 4 2 1 6 6 C 1.37882 * 120.00176 * 59.99911 * 4 2 1 7 7 N 1.31513 * 119.99508 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47483 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47055 * 119.99952 * 8 6 4 11 11 H 1.48497 * 109.46761 * 239.99763 * 8 6 4 12 12 C 1.53002 * 109.47392 * 119.99929 * 2 1 3 13 13 O 1.45206 * 109.47091 * 300.00313 * 12 2 1 14 14 C 1.34637 * 116.99932 * 179.97438 * 13 12 2 15 15 O 1.21378 * 119.99923 * 359.97438 * 14 13 12 16 16 C 1.48458 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.32480 * 119.18624 * 359.73387 * 16 14 13 18 18 C 1.32108 * 120.76554 * 179.71942 * 17 16 14 19 19 C 1.38810 * 119.16517 * 0.54198 * 18 17 16 20 20 C 1.38816 * 118.50653 * 359.72825 * 19 18 17 21 21 N 1.32097 * 119.16684 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47722 * 299.99886 * 1 2 3 23 23 H 1.09000 * 109.47250 * 59.99959 * 1 2 3 24 24 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47140 * 300.00108 * 3 2 1 27 27 H 1.09002 * 109.47045 * 60.00016 * 3 2 1 28 28 H 0.96999 * 119.99830 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47142 * 180.02562 * 12 2 1 30 30 H 1.09004 * 109.47006 * 60.00223 * 12 2 1 31 31 H 1.08001 * 120.41390 * 180.27214 * 18 17 16 32 32 H 1.07994 * 120.74548 * 179.75388 * 19 18 17 33 33 H 1.07998 * 120.41516 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6038 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4349 14 6 1.9173 -0.5487 3.6265 15 8 2.6169 -1.5394 3.6744 16 6 1.4592 0.0980 4.8819 17 7 0.6998 1.1812 4.8107 18 6 0.2701 1.7785 5.9079 19 6 0.6334 1.2639 7.1449 20 6 1.4347 0.1309 7.1816 21 7 1.8247 -0.4189 6.0456 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 0.7081 1.1609 -3.4843 29 1 3.1300 -0.7208 1.2494 30 1 1.6767 -1.7490 1.2492 31 1 -0.3524 2.6587 5.8433 32 1 0.2999 1.7342 8.0580 33 1 1.7354 -0.2956 8.1271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263387104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:52 Heat of formation + Delta-G solvation = -32.351247 kcal Electronic energy + Delta-G solvation = -17922.837567 eV Core-core repulsion = 14949.465697 eV Total energy + Delta-G solvation = -2973.371870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35058 -39.60053 -36.58748 -34.89367 -33.97486 -32.52389 -31.20511 -26.67503 -25.55797 -25.32536 -24.86173 -24.56305 -21.48758 -18.86277 -18.39816 -17.69736 -16.45306 -16.11020 -15.92769 -15.70793 -14.99860 -14.73242 -14.56780 -13.83994 -13.13583 -12.91566 -12.81619 -11.85746 -11.44871 -11.40506 -11.16363 -11.15004 -10.95781 -10.64882 -10.36917 -10.35788 -10.11648 -10.02254 -9.86817 -9.51097 -9.37817 -9.30179 -8.70892 -8.34683 -5.98907 -4.10497 0.19495 0.82693 2.50303 2.57463 3.29172 3.37395 3.41933 3.67850 3.80554 4.25227 4.29311 4.44173 4.67758 4.73718 5.15467 5.27518 5.42593 5.93779 6.04954 6.10793 6.47775 6.63190 6.74793 6.97774 7.03437 7.21213 7.23257 7.43540 7.63297 7.67237 7.73506 8.09691 8.14054 8.23858 8.42284 8.89528 9.54820 11.02289 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.004771 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.961547 B = 5867.594721 C = 6240.505180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.082 3.918 13 O -0.320 6.320 14 C 0.524 3.476 15 O -0.480 6.480 16 C 0.307 3.693 17 N -0.462 5.462 18 C 0.143 3.857 19 C -0.208 4.208 20 C 0.142 3.858 21 N -0.469 5.469 22 H 0.019 0.981 23 H 0.084 0.916 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.178 0.822 32 H 0.155 0.845 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 3.154 17.558 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 C -0.188 4.188 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 O -0.233 6.233 14 C 0.362 3.638 15 O -0.365 6.365 16 C 0.039 3.961 17 N -0.179 5.179 18 C -0.024 4.024 19 C -0.230 4.230 20 C -0.024 4.024 21 N -0.185 5.185 22 H 0.038 0.962 23 H 0.103 0.897 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.103 0.897 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.195 0.805 32 H 0.173 0.827 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.778 2.501 16.460 16.743 hybrid contribution 0.090 -0.129 0.073 0.173 sum -1.688 2.372 16.533 16.787 Atomic orbital electron populations 1.21771 0.97185 0.98956 1.00865 1.18261 0.93573 0.93156 0.87959 1.21771 0.98016 0.98121 1.00862 1.20975 1.31926 1.12294 0.89739 0.92394 1.24855 0.94812 0.94916 0.98763 1.69849 1.36322 1.22614 1.23153 0.86482 0.78630 0.79695 0.82873 1.19764 1.20982 1.20988 1.23874 0.98475 0.96027 0.80707 1.86678 1.68166 1.54861 1.13642 1.19969 0.78240 0.81728 0.83824 1.90829 1.33999 1.23965 1.87737 1.21774 0.92949 0.89984 0.91379 1.68550 1.08611 1.07574 1.33120 1.23474 0.94010 0.97761 0.87141 1.23250 1.00016 0.98630 1.01090 1.23360 0.91164 0.91341 0.96559 1.68166 1.20890 1.31351 0.98110 0.96152 0.89740 0.95879 0.95881 0.89740 0.96156 0.92984 0.92141 0.92137 0.80467 0.82707 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.11 37.15 0.30 -2.91 16 2 C 0.07 1.78 0.58 -155.67 -0.09 1.69 16 3 C -0.13 -3.21 8.11 37.16 0.30 -2.91 16 4 C -0.51 -13.81 8.01 -34.44 -0.28 -14.09 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.15 9.35 55.43 0.52 -23.63 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.08 1.87 4.27 37.16 0.16 2.03 16 13 O -0.32 -6.90 8.68 -40.32 -0.35 -7.25 16 14 C 0.52 10.55 7.99 34.94 0.28 10.83 16 15 O -0.48 -10.51 16.65 -19.17 -0.32 -10.83 16 16 C 0.31 5.19 7.59 -157.08 -1.19 4.00 16 17 N -0.46 -6.99 10.16 -11.13 -0.11 -7.10 16 18 C 0.14 1.39 11.30 -17.22 -0.19 1.20 16 19 C -0.21 -1.50 10.18 -39.16 -0.40 -1.90 16 20 C 0.14 1.33 11.30 -17.22 -0.19 1.13 16 21 N -0.47 -6.93 10.13 -11.14 -0.11 -7.05 16 22 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 23 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 27 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -31.87 288.71 -6.37 -38.24 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -3.93 Total: -3.50 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.40 Total: 0.81 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.29 Total: -37.78 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.67 Total: -18.08 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.87 -6.37 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263387104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.889 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds