Wall clock time and date at job start Thu Apr 9 2020 12:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.50696 * 109.47429 * 240.00131 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00044 * 4 2 1 6 6 C 1.37882 * 120.00176 * 59.99911 * 4 2 1 7 7 N 1.31513 * 119.99508 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47483 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47055 * 119.99952 * 8 6 4 11 11 H 1.48497 * 109.46761 * 239.99763 * 8 6 4 12 12 C 1.53002 * 109.47392 * 119.99929 * 2 1 3 13 13 O 1.45206 * 109.47091 * 300.00313 * 12 2 1 14 14 C 1.34637 * 116.99932 * 179.97438 * 13 12 2 15 15 O 1.21378 * 119.99923 * 359.97438 * 14 13 12 16 16 C 1.48458 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.32480 * 119.18624 * 359.73387 * 16 14 13 18 18 C 1.32108 * 120.76554 * 179.71942 * 17 16 14 19 19 C 1.38810 * 119.16517 * 0.54198 * 18 17 16 20 20 C 1.38816 * 118.50653 * 359.72825 * 19 18 17 21 21 N 1.32097 * 119.16684 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47722 * 299.99886 * 1 2 3 23 23 H 1.09000 * 109.47250 * 59.99959 * 1 2 3 24 24 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47140 * 300.00108 * 3 2 1 27 27 H 1.09002 * 109.47045 * 60.00016 * 3 2 1 28 28 H 0.96999 * 119.99830 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47142 * 180.02562 * 12 2 1 30 30 H 1.09004 * 109.47006 * 60.00223 * 12 2 1 31 31 H 1.08001 * 120.41390 * 180.27214 * 18 17 16 32 32 H 1.07994 * 120.74548 * 179.75388 * 19 18 17 33 33 H 1.07998 * 120.41516 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6038 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4349 14 6 1.9173 -0.5487 3.6265 15 8 2.6169 -1.5394 3.6744 16 6 1.4592 0.0980 4.8819 17 7 0.6998 1.1812 4.8107 18 6 0.2701 1.7785 5.9079 19 6 0.6334 1.2639 7.1449 20 6 1.4347 0.1309 7.1816 21 7 1.8247 -0.4189 6.0456 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 0.7081 1.1609 -3.4843 29 1 3.1300 -0.7208 1.2494 30 1 1.6767 -1.7490 1.2492 31 1 -0.3524 2.6587 5.8433 32 1 0.2999 1.7342 8.0580 33 1 1.7354 -0.2956 8.1271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263387104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:52 Heat of formation + Delta-G solvation = -52.449716 kcal Electronic energy + Delta-G solvation = -17923.709102 eV Core-core repulsion = 14949.465697 eV Total energy + Delta-G solvation = -2974.243405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.35874 -41.10492 -38.35625 -36.71377 -34.92827 -33.51482 -33.12193 -28.18604 -27.58092 -27.29567 -26.21706 -25.54531 -22.82706 -20.78105 -19.72033 -18.73832 -17.92375 -17.63388 -17.57997 -16.96610 -16.58371 -15.89907 -15.77607 -14.98312 -14.67264 -14.64974 -14.50292 -13.70540 -13.35660 -13.17307 -12.85252 -12.60067 -12.40748 -12.34475 -12.12834 -12.12353 -11.77123 -11.76392 -11.32321 -11.24822 -10.79429 -10.73881 -10.41412 -10.40602 -8.04109 -6.22552 -0.77879 0.07064 1.18668 1.21792 1.43395 1.46598 1.57124 2.44579 2.69545 2.88181 3.19279 3.25854 3.62507 3.81219 4.06914 4.19742 4.22237 4.35476 4.56547 4.75252 4.81187 5.03438 5.18247 5.23015 5.23739 5.26804 5.44978 5.62675 5.64154 5.86989 6.05426 6.16095 6.34937 6.45116 6.81431 6.87303 7.45344 8.96095 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.004771 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.961547 B = 5867.594721 C = 6240.505180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.062 3.938 3 C -0.117 4.117 4 C -0.533 4.533 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.092 3.908 13 O -0.327 6.327 14 C 0.521 3.479 15 O -0.511 6.511 16 C 0.272 3.728 17 N -0.495 5.495 18 C 0.128 3.872 19 C -0.162 4.162 20 C 0.132 3.868 21 N -0.498 5.498 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.216 0.784 32 H 0.213 0.787 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 4.042 19.908 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 C -0.175 4.175 4 C -0.571 4.571 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.019 3.981 13 O -0.241 6.241 14 C 0.362 3.638 15 O -0.398 6.398 16 C 0.005 3.995 17 N -0.213 5.213 18 C -0.037 4.037 19 C -0.183 4.183 20 C -0.033 4.033 21 N -0.216 5.216 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.230 0.770 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.420 3.403 18.832 19.290 hybrid contribution 0.219 -0.309 -0.428 0.571 sum -2.201 3.094 18.404 18.792 Atomic orbital electron populations 1.21610 0.97043 0.98605 1.00261 1.18284 0.93713 0.93318 0.88503 1.21610 0.97741 0.97906 1.00258 1.21209 1.32420 1.12536 0.90974 0.93054 1.25527 0.94916 0.95555 1.01192 1.69954 1.36654 1.23321 1.23828 0.85549 0.78147 0.78632 0.79539 1.19698 1.20493 1.20503 1.23495 0.97976 0.95528 0.81102 1.86655 1.68453 1.54914 1.14050 1.20677 0.77381 0.81428 0.84361 1.90783 1.35485 1.25367 1.88157 1.20969 0.96279 0.91924 0.90375 1.68416 1.09126 1.07545 1.36170 1.24259 0.94028 0.98503 0.86871 1.23854 0.96028 0.96249 1.02126 1.24232 0.90941 0.91985 0.96149 1.68067 1.21983 1.32688 0.98871 0.95221 0.91615 0.96058 0.96062 0.91615 0.95228 0.92793 0.92663 0.92655 0.76792 0.76971 0.76329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.11 71.98 0.58 -5.33 16 2 C 0.06 3.19 0.58 -52.93 -0.03 3.16 16 3 C -0.12 -5.91 8.11 71.98 0.58 -5.32 16 4 C -0.53 -29.33 8.01 25.60 0.21 -29.13 16 5 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -49.72 9.35 21.45 0.20 -49.52 16 8 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.09 4.37 4.27 71.98 0.31 4.68 16 13 O -0.33 -14.56 8.68 -55.45 -0.48 -15.04 16 14 C 0.52 21.78 7.99 70.55 0.56 22.34 16 15 O -0.51 -23.38 16.65 20.23 0.34 -23.04 16 16 C 0.27 9.22 7.59 137.65 1.05 10.27 16 17 N -0.49 -14.51 10.16 -189.14 -1.92 -16.43 16 18 C 0.13 2.06 11.30 84.79 0.96 3.02 16 19 C -0.16 -1.49 10.18 22.55 0.23 -1.26 16 20 C 0.13 1.98 11.30 84.79 0.96 2.94 16 21 N -0.50 -14.27 10.13 -189.14 -1.92 -16.18 16 22 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 23 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 24 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 27 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 28 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.21 -0.45 8.06 -2.91 -0.02 -0.47 16 33 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -72.56 288.71 5.20 -67.37 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.11 Total: 0.27 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.84 Total: 7.32 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.64 Total: -82.13 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.14 Total: -38.08 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.56 5.20 -67.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263387104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.917 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds