Wall clock time and date at job start Thu Apr 9 2020 12:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 C 1.50697 * 109.47230 * 239.99213 * 2 1 3 5 5 H 1.07999 * 120.00628 * 239.99853 * 4 2 1 6 6 C 1.37880 * 120.00024 * 60.00806 * 4 2 1 7 7 N 1.31523 * 119.99604 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00313 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46980 * 90.00205 * 8 6 4 10 10 H 1.48504 * 109.47255 * 209.99652 * 8 6 4 11 11 H 1.48494 * 109.46996 * 329.99916 * 8 6 4 12 12 C 1.50709 * 109.46395 * 119.99962 * 2 1 3 13 13 O 1.21276 * 119.99736 * 120.00497 * 12 2 1 14 14 N 1.34769 * 120.00071 * 299.99466 * 12 2 1 15 15 C 1.46499 * 120.00520 * 180.02562 * 14 12 2 16 16 C 1.50692 * 109.47725 * 180.02562 * 15 14 12 17 17 C 1.38425 * 120.44466 * 105.00073 * 16 15 14 18 18 C 1.38783 * 118.48433 * 180.25941 * 17 16 15 19 19 C 1.38086 * 119.28999 * 359.44722 * 18 17 16 20 20 N 1.31937 * 120.83408 * 0.56318 * 19 18 17 21 21 C 1.32281 * 121.64284 * 359.72033 * 20 19 18 22 22 O 1.35681 * 119.68447 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47383 * 300.00404 * 1 2 3 25 25 H 1.09006 * 109.46878 * 60.00516 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00155 * 0.02562 * 14 12 2 28 28 H 1.09004 * 109.46542 * 59.99864 * 15 14 12 29 29 H 1.08998 * 109.46862 * 300.00494 * 15 14 12 30 30 H 1.08002 * 120.75304 * 359.97438 * 17 16 15 31 31 H 1.08004 * 120.35625 * 179.72720 * 18 17 16 32 32 H 1.07999 * 119.58916 * 180.30032 * 19 18 17 33 33 H 0.96697 * 113.99836 * 270.02543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4875 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7117 12 6 2.0322 -0.7105 1.2306 13 8 2.7294 -1.6965 1.1193 14 7 1.7066 -0.2500 2.4546 15 6 2.1952 -0.9402 3.6509 16 6 1.6923 -0.2302 4.8812 17 6 0.6631 -0.7716 5.6321 18 6 0.2282 -0.0807 6.7544 19 6 0.8381 1.1112 7.0924 20 7 1.8171 1.6023 6.3568 21 6 2.2553 0.9760 5.2772 22 8 3.2644 1.5174 4.5494 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7084 1.1607 -3.4845 27 1 1.1487 0.5386 2.5436 28 1 3.2852 -0.9399 3.6507 29 1 1.8321 -1.9679 3.6510 30 1 0.2060 -1.7081 5.3484 31 1 -0.5756 -0.4733 7.3596 32 1 0.5067 1.6504 7.9675 33 1 2.9675 2.1112 3.8463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331842457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:55 Heat of formation + Delta-G solvation = -75.027243 kcal Electronic energy + Delta-G solvation = -17800.566575 eV Core-core repulsion = 14825.344135 eV Total energy + Delta-G solvation = -2975.222440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64871 -40.40157 -38.03953 -36.19874 -35.74302 -33.56565 -32.45814 -31.33726 -27.56308 -27.13876 -24.44460 -24.35425 -22.97878 -21.17294 -19.76533 -18.42467 -18.09734 -17.81265 -17.13767 -16.83565 -16.43713 -16.00987 -15.70988 -15.16431 -14.69785 -14.49637 -14.08299 -13.94621 -13.90399 -13.35848 -12.98196 -12.94525 -12.69028 -12.61538 -12.56480 -12.19199 -12.01147 -11.04797 -10.97962 -10.60455 -10.46485 -10.33351 -10.02745 -9.81080 -8.14605 -6.24658 -0.08442 0.20003 1.41406 1.42370 1.54146 1.92707 2.31124 2.46864 2.65855 2.86972 3.15255 3.48316 3.80616 3.94355 4.05202 4.29777 4.48186 4.53640 4.64734 4.75293 4.77283 4.94963 5.02901 5.10015 5.19845 5.49409 5.50456 5.59327 5.75593 5.94587 6.21943 6.52257 6.71183 6.85785 6.92259 7.40392 7.52732 8.91025 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.043507 B = 0.004591 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.419791 B = 6097.772260 C = 6115.226445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.043 0.957 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.524 3.476 13 O -0.586 6.586 14 N -0.719 5.719 15 C 0.175 3.825 16 C -0.176 4.176 17 C -0.045 4.045 18 C -0.170 4.170 19 C 0.120 3.880 20 N -0.534 5.534 21 C 0.308 3.692 22 O -0.495 6.495 23 H 0.023 0.977 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.192 0.808 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 1.320 18.591 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 H 0.061 0.939 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.313 3.687 13 O -0.465 6.465 14 N -0.372 5.372 15 C 0.051 3.949 16 C -0.179 4.179 17 C -0.071 4.071 18 C -0.189 4.189 19 C -0.036 4.036 20 N -0.253 5.253 21 C 0.130 3.870 22 O -0.305 6.305 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.179 0.821 31 H 0.197 0.803 32 H 0.209 0.791 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -4.293 1.199 18.919 19.437 hybrid contribution -0.225 -0.457 -1.571 1.652 sum -4.518 0.742 17.348 17.942 Atomic orbital electron populations 1.21550 0.94981 0.99481 1.01659 1.18813 0.95357 0.95992 0.89469 0.93905 1.21293 1.31561 1.12725 0.91158 0.93384 1.25575 0.95212 0.95725 1.01362 1.69947 1.37233 1.23536 1.24278 0.85613 0.78634 0.78551 0.79199 1.19952 1.20037 1.20457 1.21553 0.78086 0.83690 0.85361 1.90518 1.39844 1.28735 1.87422 1.45979 1.54306 1.32568 1.04347 1.19856 0.98641 0.95454 0.80952 1.20850 0.99752 0.98049 0.99299 1.21871 0.92209 1.00017 0.92968 1.22554 1.02556 0.95908 0.97923 1.23237 0.89093 0.93682 0.97615 1.67265 1.14360 1.36720 1.06937 1.19218 0.87512 0.90274 0.90038 1.84712 1.30400 1.66198 1.49164 0.95743 0.93041 0.91140 0.92624 0.75799 0.92275 0.90804 0.82133 0.80345 0.79080 0.72684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.87 71.98 0.64 -4.62 16 2 C 0.02 1.23 2.64 -12.28 -0.03 1.19 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -30.46 8.37 25.60 0.21 -30.24 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.14 5.30 84.65 0.45 1.58 16 7 N -0.91 -50.65 11.32 21.45 0.24 -50.41 16 8 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.54 7.15 87.66 0.63 24.17 16 13 O -0.59 -31.06 15.46 -3.02 -0.05 -31.11 16 14 N -0.72 -23.50 5.44 -466.81 -2.54 -26.04 16 15 C 0.17 5.06 5.43 85.63 0.47 5.53 16 16 C -0.18 -4.05 5.28 -19.67 -0.10 -4.16 16 17 C -0.04 -0.74 9.80 22.44 0.22 -0.52 16 18 C -0.17 -2.10 10.11 22.36 0.23 -1.87 16 19 C 0.12 1.86 11.18 84.64 0.95 2.81 16 20 N -0.53 -12.61 10.39 -308.93 -3.21 -15.82 16 21 C 0.31 7.79 7.72 84.78 0.65 8.45 16 22 O -0.50 -13.19 12.91 -89.99 -1.16 -14.35 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.81 7.56 -2.39 -0.02 1.79 16 25 H 0.07 3.48 6.07 -2.38 -0.01 3.47 16 26 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.41 11.19 7.88 -92.70 -0.73 10.46 16 28 H 0.06 1.96 8.02 -2.39 -0.02 1.94 16 29 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 30 H 0.16 2.02 8.04 -2.91 -0.02 2.00 16 31 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.41 8.20 9.06 -74.06 -0.67 7.53 16 Total: -1.00 -73.00 290.32 -0.63 -73.63 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.25 Total: 14.95 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.30 Total: 2.32 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -5.51 Total: -92.27 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.21 Total: -45.45 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.00 -0.63 -73.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331842457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.397 kcal (2) G-P(sol) polarization free energy of solvation -72.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds