Wall clock time and date at job start Thu Apr 9 2020 12:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21277 * 120.00023 * 240.00115 * 12 2 1 14 14 N 1.34774 * 119.99464 * 60.00342 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46917 * 179.97438 * 15 14 12 17 17 C 1.38425 * 120.43924 * 104.72357 * 16 15 14 18 18 C 1.38788 * 118.48171 * 179.71133 * 17 16 15 19 19 C 1.38095 * 119.29012 * 0.58804 * 18 17 16 20 20 N 1.31937 * 120.83018 * 359.67889 * 19 18 17 21 21 C 1.32283 * 121.64919 * 0.02562 * 20 19 18 22 22 O 1.35674 * 119.68303 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 28 28 H 1.08998 * 109.47262 * 299.99754 * 15 14 12 29 29 H 1.09002 * 109.47037 * 60.00718 * 15 14 12 30 30 H 1.08000 * 120.75662 * 0.02562 * 17 16 15 31 31 H 1.08001 * 120.35522 * 180.28184 * 18 17 16 32 32 H 1.07991 * 119.58636 * 179.70173 * 19 18 17 33 33 H 0.96702 * 113.99802 * 270.01982 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9405 -3.6506 16 6 1.6926 -0.2306 -4.8811 17 6 2.5437 0.5647 -5.6290 18 6 2.0393 1.1948 -6.7580 19 6 0.7107 1.0207 -7.0921 20 7 -0.0776 0.2606 -6.3561 21 6 0.3678 -0.3608 -5.2766 22 8 -0.4780 -1.1325 -4.5486 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 1.1494 0.5387 -2.5436 28 1 3.2855 -0.9401 -3.6504 29 1 1.8325 -1.9683 -3.6507 30 1 3.5779 0.6880 -5.3432 31 1 2.6777 1.8186 -7.3661 32 1 0.3120 1.5126 -7.9669 33 1 -0.9391 -0.6551 -3.8453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331842461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:58 Heat of formation + Delta-G solvation = -47.708117 kcal Electronic energy + Delta-G solvation = -17827.084837 eV Core-core repulsion = 14853.047043 eV Total energy + Delta-G solvation = -2974.037794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74763 -38.72205 -37.12585 -34.83373 -33.74312 -32.41076 -30.91580 -30.07851 -26.34619 -25.14589 -23.57895 -22.83079 -21.79342 -19.47857 -18.85767 -17.10504 -16.63392 -16.33309 -16.01985 -15.36216 -14.89742 -14.51739 -14.37866 -13.92343 -13.32528 -13.21718 -12.94760 -12.74548 -12.22533 -12.02338 -11.73689 -11.46733 -11.01850 -10.73794 -10.71799 -10.27308 -10.09468 -9.96879 -9.61228 -9.15570 -8.99425 -8.59989 -8.49925 -8.32798 -6.04361 -4.07378 0.73704 0.98496 3.26810 3.33577 3.39385 3.46672 3.62078 3.70238 4.01477 4.42311 4.47990 4.60281 4.70279 4.79701 5.19957 5.29252 5.30658 5.55871 5.82764 5.83949 6.06365 6.23753 6.28788 6.57284 6.78889 6.88905 6.98341 7.37179 7.44890 7.71750 7.73858 7.96828 8.11557 8.40795 9.01890 9.19873 9.58391 11.03287 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044415 B = 0.004655 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.271127 B = 6013.191859 C = 6174.264790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.521 3.479 13 O -0.543 6.543 14 N -0.744 5.744 15 C 0.168 3.832 16 C -0.164 4.164 17 C -0.046 4.046 18 C -0.186 4.186 19 C 0.122 3.878 20 N -0.506 5.506 21 C 0.327 3.673 22 O -0.477 6.477 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.010 0.990 26 H 0.261 0.739 27 H 0.393 0.607 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 3.762 -16.938 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.418 6.418 14 N -0.399 5.399 15 C 0.044 3.956 16 C -0.167 4.167 17 C -0.072 4.072 18 C -0.206 4.206 19 C -0.035 4.035 20 N -0.224 5.224 21 C 0.147 3.853 22 O -0.284 6.284 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.226 0.774 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.628 2.527 -17.232 17.428 hybrid contribution 0.676 0.474 1.198 1.455 sum 0.048 3.002 -16.034 16.313 Atomic orbital electron populations 1.21741 0.96528 0.99877 1.00807 1.18877 0.94165 0.96796 0.89285 0.93052 1.21147 1.31046 1.12759 0.88971 0.90765 1.24951 0.95104 0.95060 0.99132 1.69870 1.37143 1.23091 1.23557 0.86446 0.78452 0.80269 0.82025 1.20687 1.21299 1.19719 1.22013 0.78457 0.84262 0.84230 1.90541 1.37875 1.26805 1.86605 1.46335 1.55853 1.32480 1.05189 1.19911 0.98869 0.95989 0.80872 1.21113 0.94863 1.01070 0.99699 1.21558 1.00208 0.92487 0.92932 1.22158 0.97225 1.02528 0.98702 1.22551 0.90079 0.93413 0.97450 1.67234 1.40329 1.08333 1.06550 1.19090 0.87516 0.89231 0.89432 1.84742 1.59855 1.35278 1.48534 0.94828 0.88851 0.97136 0.92966 0.77389 0.91088 0.90343 0.84060 0.84267 0.82307 0.73695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 2 C 0.03 0.73 2.64 -92.92 -0.24 0.48 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.08 8.37 -34.44 -0.29 -14.36 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.60 5.31 -17.82 -0.09 1.51 16 7 N -0.90 -24.93 11.33 55.43 0.63 -24.31 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.52 11.55 7.15 -10.99 -0.08 11.47 16 13 O -0.54 -13.99 15.46 5.56 0.09 -13.90 16 14 N -0.74 -12.35 5.44 -61.47 -0.33 -12.68 16 15 C 0.17 2.47 5.43 -5.19 -0.03 2.44 16 16 C -0.16 -2.01 5.28 -104.32 -0.55 -2.56 16 17 C -0.05 -0.45 9.80 -39.31 -0.39 -0.84 16 18 C -0.19 -1.54 10.11 -39.43 -0.40 -1.94 16 19 C 0.12 1.15 11.18 -17.56 -0.20 0.96 16 20 N -0.51 -6.43 10.39 -13.33 -0.14 -6.56 16 21 C 0.33 4.28 7.72 -17.12 -0.13 4.15 16 22 O -0.48 -6.33 12.91 -18.72 -0.24 -6.57 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.09 2.31 6.08 -51.93 -0.32 1.99 16 25 H 0.01 0.18 7.56 -51.93 -0.39 -0.22 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.39 5.67 7.88 -40.82 -0.32 5.35 16 28 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 29 H 0.08 1.27 8.02 -51.93 -0.42 0.86 16 30 H 0.14 1.14 8.05 -52.49 -0.42 0.72 16 31 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.40 4.02 9.06 45.56 0.41 4.44 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -33.11 290.35 -5.77 -38.87 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.05 Total: 5.37 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.07 Total: -1.28 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.16 Total: -43.55 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.16 Total: -20.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.11 -5.77 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331842461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.837 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds