Wall clock time and date at job start Thu Apr 9 2020 12:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21277 * 120.00023 * 240.00115 * 12 2 1 14 14 N 1.34774 * 119.99464 * 60.00342 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46917 * 179.97438 * 15 14 12 17 17 C 1.38425 * 120.43924 * 104.72357 * 16 15 14 18 18 C 1.38788 * 118.48171 * 179.71133 * 17 16 15 19 19 C 1.38095 * 119.29012 * 0.58804 * 18 17 16 20 20 N 1.31937 * 120.83018 * 359.67889 * 19 18 17 21 21 C 1.32283 * 121.64919 * 0.02562 * 20 19 18 22 22 O 1.35674 * 119.68303 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 28 28 H 1.08998 * 109.47262 * 299.99754 * 15 14 12 29 29 H 1.09002 * 109.47037 * 60.00718 * 15 14 12 30 30 H 1.08000 * 120.75662 * 0.02562 * 17 16 15 31 31 H 1.08001 * 120.35522 * 180.28184 * 18 17 16 32 32 H 1.07991 * 119.58636 * 179.70173 * 19 18 17 33 33 H 0.96702 * 113.99802 * 270.01982 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9405 -3.6506 16 6 1.6926 -0.2306 -4.8811 17 6 2.5437 0.5647 -5.6290 18 6 2.0393 1.1948 -6.7580 19 6 0.7107 1.0207 -7.0921 20 7 -0.0776 0.2606 -6.3561 21 6 0.3678 -0.3608 -5.2766 22 8 -0.4780 -1.1325 -4.5486 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 1.1494 0.5387 -2.5436 28 1 3.2855 -0.9401 -3.6504 29 1 1.8325 -1.9683 -3.6507 30 1 3.5779 0.6880 -5.3432 31 1 2.6777 1.8186 -7.3661 32 1 0.3120 1.5126 -7.9669 33 1 -0.9391 -0.6551 -3.8453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331842461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:57 Heat of formation + Delta-G solvation = -75.012080 kcal Electronic energy + Delta-G solvation = -17828.268825 eV Core-core repulsion = 14853.047043 eV Total energy + Delta-G solvation = -2975.221782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.64728 -40.39942 -38.03383 -36.19807 -35.73991 -33.56492 -32.45933 -31.33283 -27.56189 -27.13879 -24.43434 -24.35704 -22.98210 -21.17060 -19.76015 -18.43243 -18.03599 -17.87276 -17.13327 -16.82547 -16.44325 -16.00200 -15.74805 -15.03744 -14.74421 -14.56824 -14.09608 -13.96989 -13.79058 -13.38817 -12.99563 -12.94497 -12.70867 -12.59292 -12.55463 -12.18312 -12.01036 -11.03931 -10.98262 -10.60453 -10.46820 -10.33160 -10.02799 -9.80703 -8.14641 -6.24625 -0.08409 0.20036 1.41294 1.42360 1.54152 1.92700 2.31291 2.46856 2.66104 2.87049 3.15314 3.48402 3.80655 3.94412 4.05134 4.29805 4.48463 4.53925 4.64419 4.74747 4.78672 4.95221 5.03203 5.10185 5.19632 5.49422 5.50934 5.59365 5.75961 5.94824 6.22280 6.52739 6.71270 6.85814 6.92444 7.40413 7.52790 8.91033 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.044415 B = 0.004655 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.271127 B = 6013.191859 C = 6174.264790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.524 3.476 13 O -0.586 6.586 14 N -0.719 5.719 15 C 0.175 3.825 16 C -0.176 4.176 17 C -0.045 4.045 18 C -0.171 4.171 19 C 0.120 3.880 20 N -0.533 5.533 21 C 0.309 3.691 22 O -0.495 6.495 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.192 0.808 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 5.136 -18.599 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.313 3.687 13 O -0.465 6.465 14 N -0.372 5.372 15 C 0.051 3.949 16 C -0.180 4.180 17 C -0.071 4.071 18 C -0.190 4.190 19 C -0.036 4.036 20 N -0.253 5.253 21 C 0.130 3.870 22 O -0.304 6.304 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.196 0.804 32 H 0.209 0.791 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.435 3.944 -18.927 19.338 hybrid contribution 0.606 0.125 1.575 1.693 sum 0.171 4.070 -17.351 17.823 Atomic orbital electron populations 1.21554 0.94909 0.99508 1.01734 1.18812 0.95456 0.95914 0.89467 0.93994 1.21297 1.31640 1.12647 0.91165 0.93393 1.25573 0.95212 0.95728 1.01363 1.69946 1.37220 1.23536 1.24284 0.85614 0.78402 0.78778 0.79209 1.19995 1.20007 1.20451 1.21553 0.78163 0.83610 0.85361 1.90519 1.39954 1.28628 1.87420 1.45983 1.54612 1.32266 1.04349 1.19862 0.98883 0.95219 0.80943 1.20853 0.95132 1.02636 0.99366 1.21874 1.00798 0.91452 0.92982 1.22556 0.97083 1.01498 0.97844 1.23237 0.90578 0.92176 0.97625 1.67264 1.41632 1.09465 1.06915 1.19210 0.87729 0.90013 0.90016 1.84710 1.60257 1.36322 1.49120 0.95729 0.91206 0.92815 0.92626 0.75799 0.90809 0.92254 0.82152 0.80367 0.79082 0.72688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.87 71.98 0.64 -4.62 16 2 C 0.02 1.22 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.53 -30.47 8.37 25.60 0.21 -30.26 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.14 5.31 84.66 0.45 1.58 16 7 N -0.91 -50.66 11.33 21.45 0.24 -50.42 16 8 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.54 7.15 87.66 0.63 24.16 16 13 O -0.59 -31.06 15.46 -3.02 -0.05 -31.11 16 14 N -0.72 -23.49 5.44 -466.78 -2.54 -26.03 16 15 C 0.17 5.06 5.43 85.63 0.47 5.52 16 16 C -0.18 -4.06 5.28 -19.67 -0.10 -4.16 16 17 C -0.05 -0.75 9.80 22.45 0.22 -0.53 16 18 C -0.17 -2.11 10.11 22.37 0.23 -1.88 16 19 C 0.12 1.87 11.18 84.64 0.95 2.81 16 20 N -0.53 -12.58 10.39 -308.93 -3.21 -15.79 16 21 C 0.31 7.79 7.72 84.78 0.65 8.44 16 22 O -0.49 -13.11 12.91 -89.92 -1.16 -14.27 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 3.45 6.08 -2.39 -0.01 3.43 16 25 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 26 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 27 H 0.41 11.18 7.88 -92.71 -0.73 10.45 16 28 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 29 H 0.06 1.97 8.02 -2.39 -0.02 1.95 16 30 H 0.16 2.03 8.05 -2.91 -0.02 2.00 16 31 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.41 8.17 9.06 -74.06 -0.67 7.50 16 Total: -1.00 -73.01 290.35 -0.63 -73.64 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.25 Total: 14.87 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.30 Total: 2.26 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -5.51 Total: -92.24 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.21 Total: -45.37 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.01 -0.63 -73.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331842461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.370 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds