Wall clock time and date at job start Thu Apr 9 2020 12:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47256 * 2 1 4 4 N 1.31884 * 119.64546 * 269.97896 * 3 2 1 5 5 C 1.32269 * 121.72906 * 180.02562 * 4 3 2 6 6 O 1.35696 * 119.58988 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99811 * 0.02562 * 6 5 4 8 8 C 1.39030 * 120.82250 * 359.97438 * 5 4 3 9 9 C 1.38218 * 119.20376 * 359.76000 * 8 5 4 10 10 C 1.38919 * 119.64510 * 90.00584 * 3 2 1 11 11 N 1.39606 * 120.43949 * 359.97240 * 10 3 2 12 12 C 1.34780 * 119.99556 * 145.90014 * 11 10 3 13 13 O 1.21767 * 120.00279 * 4.34227 * 12 11 10 14 14 C 1.41813 * 119.99661 * 184.34753 * 12 11 10 15 15 H 1.08006 * 119.99943 * 359.97438 * 14 12 11 16 16 C 1.40131 * 120.00118 * 179.97438 * 14 12 11 17 17 N 1.30635 * 120.00135 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00201 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46813 * 60.00075 * 18 16 14 20 20 H 1.48499 * 109.46939 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47007 * 300.00137 * 18 16 14 22 22 H 1.08992 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46746 * 300.00351 * 1 2 3 24 24 H 1.09002 * 109.46872 * 59.99348 * 1 2 3 25 25 H 1.09004 * 109.47018 * 240.00379 * 2 1 3 26 26 H 1.08994 * 109.47126 * 120.00677 * 2 1 3 27 27 H 1.08998 * 109.47361 * 299.99522 * 7 6 5 28 28 H 1.08998 * 109.47078 * 60.00371 * 7 6 5 29 29 H 1.09003 * 109.46727 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.39826 * 180.02562 * 8 5 4 31 31 H 1.08004 * 120.79414 * 180.25622 * 9 8 5 32 32 H 0.97000 * 120.00130 * 325.90081 * 11 10 3 33 33 H 0.96997 * 120.00293 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1462 5 6 2.6913 3.2817 -1.1943 6 8 2.9011 3.8723 -2.3979 7 6 2.6244 3.0900 -3.5613 8 6 2.9427 3.9939 -0.0271 9 6 2.7215 3.3864 1.1946 10 6 2.2615 2.0686 1.2074 11 7 2.0290 1.4123 2.4174 12 6 2.8132 1.6669 3.4836 13 8 3.6735 2.5260 3.4154 14 6 2.6365 0.9342 4.6848 15 1 1.8732 0.1725 4.7454 16 6 3.4521 1.1985 5.7932 17 7 4.3757 2.1195 5.7198 18 14 3.2189 0.2338 7.3758 19 1 3.4317 -1.2117 7.1103 20 1 4.1986 0.7010 8.3892 21 1 1.8405 0.4457 7.8861 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.2530 2.1996 -3.5585 28 1 1.5753 2.7943 -3.5592 29 1 2.8333 3.6799 -4.4538 30 1 3.3024 5.0111 -0.0743 31 1 2.9043 3.9172 2.1172 32 1 1.3031 0.7731 2.4908 33 1 4.9400 2.3027 6.4871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333542972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:59 Heat of formation + Delta-G solvation = -47.041104 kcal Electronic energy + Delta-G solvation = -18088.447788 eV Core-core repulsion = 15114.438918 eV Total energy + Delta-G solvation = -2974.008870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28881 -38.35743 -36.92395 -33.91607 -33.40946 -32.39092 -30.76830 -28.84884 -27.07536 -26.17041 -23.91104 -22.57636 -21.08546 -20.01642 -18.09663 -17.46643 -16.15712 -16.10980 -15.63675 -15.45198 -14.36356 -14.22291 -14.09912 -13.49627 -13.23229 -13.03572 -12.76631 -12.38347 -12.17058 -11.95172 -11.64769 -11.44046 -11.20794 -11.13001 -10.80920 -10.72916 -10.64222 -10.41318 -9.62675 -9.18042 -9.02247 -8.66599 -7.75143 -6.96132 -6.41711 -4.95172 1.68985 1.98219 3.04353 3.10090 3.11762 3.52065 3.94421 4.20080 4.44932 4.57462 4.65474 5.19038 5.40530 5.47036 5.48826 5.52453 5.57701 5.71044 5.72334 5.78506 5.89974 6.07638 6.18029 6.29491 6.35973 6.51346 6.80638 7.04645 7.19700 7.63433 7.78205 7.95903 8.08527 8.41584 8.75705 9.22312 10.33230 10.52778 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.005705 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.675770 B = 4907.035886 C = 5582.256017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C 0.104 3.896 4 N -0.520 5.520 5 C 0.269 3.731 6 O -0.316 6.316 7 C 0.045 3.955 8 C -0.171 4.171 9 C -0.056 4.056 10 C 0.119 3.881 11 N -0.692 5.692 12 C 0.544 3.456 13 O -0.569 6.569 14 C -0.537 4.537 15 H 0.070 0.930 16 C 0.089 3.911 17 N -0.747 5.747 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.393 0.607 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -2.057 -9.700 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.036 4.036 4 N -0.243 5.243 5 C 0.089 3.911 6 O -0.224 6.224 7 C -0.050 4.050 8 C -0.192 4.192 9 C -0.084 4.084 10 C 0.018 3.982 11 N -0.337 5.337 12 C 0.353 3.647 13 O -0.453 6.453 14 C -0.573 4.573 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.374 5.374 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.178 0.822 32 H 0.227 0.773 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.142 -1.554 -10.387 11.693 hybrid contribution -0.282 -0.552 1.373 1.507 sum -5.424 -2.105 -9.013 10.728 Atomic orbital electron populations 1.21708 0.94729 1.01579 1.02077 1.20334 0.95900 0.91061 1.03353 1.20582 1.00852 0.95814 0.86359 1.66833 1.17874 1.09469 1.30151 1.19573 0.96890 0.89127 0.85525 1.86180 1.83233 1.40816 1.12199 1.22675 1.01163 0.96002 0.85196 1.20958 1.06796 1.01653 0.89796 1.21815 0.95450 0.92851 0.98285 1.18593 1.00134 0.91925 0.87538 1.44071 1.35420 1.45099 1.09107 1.17096 0.80756 0.84544 0.82312 1.90626 1.36163 1.35962 1.82520 1.20003 1.19585 1.21396 0.96274 0.91149 1.25755 0.93530 0.94211 0.99969 1.69991 1.13234 1.24064 1.30159 0.86333 0.78993 0.80419 0.80540 1.19025 1.20335 1.19021 0.92249 0.92649 0.92628 0.90524 0.90031 0.92856 0.92915 0.89505 0.84860 0.82203 0.77343 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.07 -1.02 5.69 -27.89 -0.16 -1.18 16 3 C 0.10 1.93 6.06 -82.32 -0.50 1.43 16 4 N -0.52 -9.63 9.11 -9.32 -0.08 -9.72 16 5 C 0.27 5.01 7.49 -17.07 -0.13 4.88 16 6 O -0.32 -5.23 10.47 -18.79 -0.20 -5.43 16 7 C 0.05 0.57 10.38 101.05 1.05 1.62 16 8 C -0.17 -3.25 10.03 -39.30 -0.39 -3.64 16 9 C -0.06 -1.20 8.80 -39.09 -0.34 -1.54 16 10 C 0.12 2.52 6.31 -83.56 -0.53 1.99 16 11 N -0.69 -15.14 4.74 -12.29 -0.06 -15.20 16 12 C 0.54 14.63 7.43 -14.89 -0.11 14.52 16 13 O -0.57 -17.23 12.32 5.13 0.06 -17.17 16 14 C -0.54 -14.19 9.31 -37.51 -0.35 -14.54 16 15 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 16 C 0.09 2.32 5.50 -17.35 -0.10 2.22 16 17 N -0.75 -21.10 11.73 55.55 0.65 -20.44 16 18 Si 0.91 18.89 29.56 -169.99 -5.02 13.86 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.71 7.86 -51.93 -0.41 0.30 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.24 7.15 -51.93 -0.37 0.87 16 27 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 31 H 0.16 3.78 6.28 -52.48 -0.33 3.45 16 32 H 0.39 7.37 7.50 -40.82 -0.31 7.07 16 33 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -31.74 287.90 -5.42 -37.15 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.92 Total: 8.28 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.19 Total: 4.32 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.51 Total: -45.36 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.13 Total: -22.60 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.74 -5.42 -37.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333542972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.888 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds