Wall clock time and date at job start Thu Apr 9 2020 12:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47256 * 2 1 4 4 N 1.31884 * 119.64546 * 269.97896 * 3 2 1 5 5 C 1.32269 * 121.72906 * 180.02562 * 4 3 2 6 6 O 1.35696 * 119.58988 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99811 * 0.02562 * 6 5 4 8 8 C 1.39030 * 120.82250 * 359.97438 * 5 4 3 9 9 C 1.38218 * 119.20376 * 359.76000 * 8 5 4 10 10 C 1.38919 * 119.64510 * 90.00584 * 3 2 1 11 11 N 1.39606 * 120.43949 * 359.97240 * 10 3 2 12 12 C 1.34780 * 119.99556 * 145.90014 * 11 10 3 13 13 O 1.21767 * 120.00279 * 4.34227 * 12 11 10 14 14 C 1.41813 * 119.99661 * 184.34753 * 12 11 10 15 15 H 1.08006 * 119.99943 * 359.97438 * 14 12 11 16 16 C 1.40131 * 120.00118 * 179.97438 * 14 12 11 17 17 N 1.30635 * 120.00135 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00201 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46813 * 60.00075 * 18 16 14 20 20 H 1.48499 * 109.46939 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47007 * 300.00137 * 18 16 14 22 22 H 1.08992 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46746 * 300.00351 * 1 2 3 24 24 H 1.09002 * 109.46872 * 59.99348 * 1 2 3 25 25 H 1.09004 * 109.47018 * 240.00379 * 2 1 3 26 26 H 1.08994 * 109.47126 * 120.00677 * 2 1 3 27 27 H 1.08998 * 109.47361 * 299.99522 * 7 6 5 28 28 H 1.08998 * 109.47078 * 60.00371 * 7 6 5 29 29 H 1.09003 * 109.46727 * 179.97438 * 7 6 5 30 30 H 1.07996 * 120.39826 * 180.02562 * 8 5 4 31 31 H 1.08004 * 120.79414 * 180.25622 * 9 8 5 32 32 H 0.97000 * 120.00130 * 325.90081 * 11 10 3 33 33 H 0.96997 * 120.00293 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2502 2.0357 -1.1462 5 6 2.6913 3.2817 -1.1943 6 8 2.9011 3.8723 -2.3979 7 6 2.6244 3.0900 -3.5613 8 6 2.9427 3.9939 -0.0271 9 6 2.7215 3.3864 1.1946 10 6 2.2615 2.0686 1.2074 11 7 2.0290 1.4123 2.4174 12 6 2.8132 1.6669 3.4836 13 8 3.6735 2.5260 3.4154 14 6 2.6365 0.9342 4.6848 15 1 1.8732 0.1725 4.7454 16 6 3.4521 1.1985 5.7932 17 7 4.3757 2.1195 5.7198 18 14 3.2189 0.2338 7.3758 19 1 3.4317 -1.2117 7.1103 20 1 4.1986 0.7010 8.3892 21 1 1.8405 0.4457 7.8861 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.2530 2.1996 -3.5585 28 1 1.5753 2.7943 -3.5592 29 1 2.8333 3.6799 -4.4538 30 1 3.3024 5.0111 -0.0743 31 1 2.9043 3.9172 2.1172 32 1 1.3031 0.7731 2.4908 33 1 4.9400 2.3027 6.4871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333542972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:24:59 Heat of formation + Delta-G solvation = -70.396549 kcal Electronic energy + Delta-G solvation = -18089.460556 eV Core-core repulsion = 15114.438918 eV Total energy + Delta-G solvation = -2975.021638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81697 -39.98962 -38.57616 -35.51430 -35.00892 -34.33683 -32.25820 -30.37431 -28.64974 -27.67475 -25.23072 -24.20302 -22.46701 -21.85967 -19.79565 -18.96935 -17.85018 -17.80233 -17.27611 -16.91933 -15.90242 -15.67089 -15.43623 -14.99201 -14.76400 -14.54122 -14.44571 -13.96417 -13.77039 -13.24134 -13.10572 -12.78126 -12.73555 -12.67360 -12.38164 -12.07542 -12.04481 -11.91676 -11.23107 -10.92945 -10.70944 -10.36001 -9.77761 -8.61995 -8.37505 -7.00798 0.16270 0.37150 1.41809 1.43624 1.56654 2.18194 2.23686 2.36418 2.79046 2.92698 3.25809 3.62335 3.80587 4.12411 4.25297 4.35678 4.43385 4.47759 4.49269 4.55347 4.73617 4.81914 4.99268 5.04710 5.11490 5.22341 5.27506 5.34569 5.45968 5.87618 6.12595 6.14387 6.39635 6.74684 6.88546 7.37415 8.37715 8.56399 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.005705 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.675770 B = 4907.035886 C = 5582.256017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.117 3.883 4 N -0.518 5.518 5 C 0.274 3.726 6 O -0.320 6.320 7 C 0.038 3.962 8 C -0.176 4.176 9 C -0.073 4.073 10 C 0.087 3.913 11 N -0.681 5.681 12 C 0.530 3.470 13 O -0.615 6.615 14 C -0.562 4.562 15 H 0.093 0.907 16 C 0.034 3.966 17 N -0.801 5.801 18 Si 1.000 3.000 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.252 1.252 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.407 0.593 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 -3.785 -10.542 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C -0.023 4.023 4 N -0.242 5.242 5 C 0.094 3.906 6 O -0.228 6.228 7 C -0.056 4.056 8 C -0.197 4.197 9 C -0.102 4.102 10 C -0.013 4.013 11 N -0.327 5.327 12 C 0.339 3.661 13 O -0.502 6.502 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.429 5.429 18 Si 0.819 3.181 19 H -0.177 1.177 20 H -0.200 1.200 21 H -0.176 1.176 22 H 0.106 0.894 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.243 0.757 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.417 -3.287 -11.298 13.402 hybrid contribution 0.092 0.038 1.417 1.421 sum -6.325 -3.249 -9.880 12.173 Atomic orbital electron populations 1.21673 0.92513 1.03407 1.01797 1.20466 0.97676 0.88507 1.03923 1.21093 0.98740 0.97140 0.85305 1.66997 1.18035 1.09442 1.29693 1.19735 0.95535 0.88998 0.86335 1.86188 1.82813 1.41449 1.12344 1.23016 1.01428 0.96514 0.84670 1.21057 1.06818 1.02572 0.89279 1.21630 0.96850 0.93556 0.98135 1.18783 1.02256 0.92155 0.88062 1.43562 1.35231 1.45323 1.08576 1.17464 0.80766 0.84165 0.83688 1.90592 1.38221 1.37721 1.83681 1.20546 1.20490 1.22000 0.96659 0.88860 1.27000 0.92498 0.94892 1.04085 1.70152 1.14690 1.26302 1.31784 0.85025 0.79404 0.78812 0.74863 1.17672 1.19967 1.17632 0.89382 0.93216 0.92623 0.89079 0.90259 0.92997 0.92516 0.85820 0.83073 0.85354 0.75675 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.07 -1.90 5.69 29.85 0.17 -1.73 16 3 C 0.12 4.27 6.06 42.71 0.26 4.53 16 4 N -0.52 -18.49 9.11 -296.25 -2.70 -21.19 16 5 C 0.27 9.95 7.49 84.82 0.64 10.58 16 6 O -0.32 -9.99 10.47 -90.15 -0.94 -10.93 16 7 C 0.04 0.86 10.38 113.37 1.18 2.04 16 8 C -0.18 -6.79 10.03 22.45 0.23 -6.57 16 9 C -0.07 -3.30 8.80 22.59 0.20 -3.10 16 10 C 0.09 3.76 6.31 38.39 0.24 4.00 16 11 N -0.68 -30.42 4.74 -310.99 -1.47 -31.89 16 12 C 0.53 29.49 7.43 85.12 0.63 30.13 16 13 O -0.61 -39.24 12.32 -4.56 -0.06 -39.30 16 14 C -0.56 -30.00 9.31 23.61 0.22 -29.78 16 15 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 16 C 0.03 1.77 5.50 85.33 0.47 2.24 16 17 N -0.80 -46.70 11.73 21.85 0.26 -46.44 16 18 Si 1.00 38.38 29.56 68.60 2.03 40.41 16 19 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.17 7.86 -2.38 -0.02 1.16 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.08 2.28 7.15 -2.39 -0.02 2.26 16 27 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 28 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.15 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.13 6.57 6.28 -2.91 -0.02 6.55 16 32 H 0.41 15.25 7.50 -92.71 -0.70 14.56 16 33 H 0.28 14.71 8.29 -92.71 -0.77 13.95 16 Total: -1.00 -71.03 287.90 2.49 -68.54 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.44 Total: 30.82 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.94 Total: 9.99 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.92 Total: -99.52 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.00 Total: -50.23 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -71.03 2.49 -68.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333542972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds