Wall clock time and date at job start Thu Apr 9 2020 12:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34103 * 125.82481 * 2 1 4 4 H 0.97000 * 125.35333 * 0.02562 * 3 2 1 5 5 C 1.37848 * 109.30503 * 179.87190 * 3 2 1 6 6 C 1.46839 * 125.80605 * 180.16009 * 5 3 2 7 7 O 1.21672 * 120.00210 * 180.27964 * 6 5 3 8 8 N 1.34784 * 119.99773 * 0.27642 * 6 5 3 9 9 C 1.46497 * 119.99712 * 180.02562 * 8 6 5 10 10 C 1.50712 * 109.46787 * 180.02562 * 9 8 6 11 11 H 1.07992 * 119.99925 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99718 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99779 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00340 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47343 * 89.99683 * 14 12 10 16 16 H 1.48493 * 109.47436 * 209.99947 * 14 12 10 17 17 H 1.48507 * 109.47189 * 330.00237 * 14 12 10 18 18 C 1.36244 * 108.39337 * 0.39665 * 5 3 2 19 19 C 1.50696 * 126.50949 * 179.78753 * 18 5 3 20 20 C 1.38623 * 125.82619 * 180.31025 * 2 1 3 21 21 C 1.46622 * 126.51607 * 359.95918 * 20 2 1 22 22 O 1.21319 * 120.00031 * 180.02562 * 21 20 2 23 23 H 1.09002 * 109.47152 * 269.68909 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69009 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68990 * 1 2 3 26 26 H 0.97004 * 119.99890 * 0.02562 * 8 6 5 27 27 H 1.09000 * 109.47190 * 299.99200 * 9 8 6 28 28 H 1.08993 * 109.47594 * 60.00363 * 9 8 6 29 29 H 0.97000 * 120.00260 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.47300 * 269.99961 * 19 18 5 31 31 H 1.09000 * 109.47118 * 29.99493 * 19 18 5 32 32 H 1.09000 * 109.47671 * 149.99682 * 19 18 5 33 33 H 1.08002 * 120.00074 * 0.02562 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.0873 0.0000 4 1 1.9790 2.0054 0.0004 5 6 3.6135 0.6954 0.0029 6 6 4.7757 1.5928 0.0072 7 8 5.9013 1.1307 0.0043 8 7 4.5957 2.9285 0.0142 9 6 5.7552 3.8239 0.0178 10 6 5.2843 5.2555 0.0262 11 1 4.2272 5.4762 0.0281 12 6 6.2033 6.2834 0.0314 13 7 5.7924 7.5327 0.0382 14 14 8.0318 5.9016 0.0288 15 1 8.5160 5.8078 -1.3719 16 1 8.7644 6.9835 0.7343 17 1 8.2688 4.6098 0.7219 18 6 3.6581 -0.6663 -0.0042 19 6 4.8980 -1.5228 -0.0085 20 6 2.3184 -1.1239 -0.0061 21 6 1.8737 -2.5211 -0.0128 22 8 2.6908 -3.4178 -0.0173 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 3.6983 3.2970 0.0168 27 1 6.3575 3.6348 0.9065 28 1 6.3561 3.6439 -0.8735 29 1 6.4388 8.2559 0.0422 30 1 5.1971 -1.7240 -1.0373 31 1 5.7028 -0.9997 0.5080 32 1 4.6912 -2.4642 0.5004 33 1 0.8186 -2.7519 -0.0138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335185019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:01 Heat of formation + Delta-G solvation = -68.947040 kcal Electronic energy + Delta-G solvation = -17629.298831 eV Core-core repulsion = 14654.340048 eV Total energy + Delta-G solvation = -2974.958783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.70943 -40.21580 -39.31497 -36.36148 -34.57127 -33.85115 -32.80028 -30.22150 -29.12462 -27.37964 -25.34726 -23.92101 -22.29957 -20.89360 -20.09610 -19.75880 -18.49887 -17.19478 -16.98904 -16.70738 -16.36725 -15.73952 -15.62326 -15.47033 -14.79512 -14.63753 -14.43198 -14.28898 -14.21109 -13.89339 -13.63255 -13.17467 -13.11592 -13.08785 -12.74404 -12.48451 -11.97283 -11.71537 -11.13838 -10.95898 -10.51276 -10.14966 -9.92622 -9.14840 -8.44163 -6.51563 0.38934 0.49210 1.30561 1.33503 1.45547 1.93846 2.14594 2.24389 2.29520 2.40343 2.91771 3.61495 3.77223 3.85145 3.95345 4.21681 4.53726 4.66956 4.74614 4.76434 4.83308 4.90399 4.95913 5.06044 5.18378 5.24141 5.28868 5.37390 5.59893 5.67049 6.03703 6.32837 6.47170 6.69747 6.79003 7.08315 7.23409 8.70183 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.037006 B = 0.004889 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.459050 B = 5726.033041 C = 6456.742615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.159 3.841 3 N -0.512 5.512 4 H 0.434 0.566 5 C -0.089 4.089 6 C 0.573 3.427 7 O -0.578 6.578 8 N -0.702 5.702 9 C 0.233 3.767 10 C -0.548 4.548 11 H 0.062 0.938 12 C 0.031 3.969 13 N -0.928 5.928 14 Si 0.934 3.066 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.262 1.262 18 C -0.037 4.037 19 C -0.089 4.089 20 C -0.320 4.320 21 C 0.417 3.583 22 O -0.520 6.520 23 H 0.108 0.892 24 H 0.117 0.883 25 H 0.093 0.907 26 H 0.404 0.596 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.273 0.727 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 -15.029 -0.057 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.033 3.967 3 N -0.109 5.109 4 H 0.274 0.726 5 C -0.199 4.199 6 C 0.361 3.639 7 O -0.460 6.460 8 N -0.351 5.351 9 C 0.109 3.891 10 C -0.586 4.586 11 H 0.081 0.919 12 C -0.170 4.170 13 N -0.566 5.566 14 Si 0.758 3.242 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.186 1.186 18 C -0.044 4.044 19 C -0.146 4.146 20 C -0.327 4.327 21 C 0.280 3.720 22 O -0.397 6.397 23 H 0.127 0.873 24 H 0.135 0.865 25 H 0.112 0.888 26 H 0.239 0.761 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.970 -15.390 -0.061 20.785 hybrid contribution 0.800 1.278 -0.023 1.508 sum -13.170 -14.112 -0.083 19.303 Atomic orbital electron populations 1.20923 0.82201 1.06672 1.05922 1.21865 0.95679 0.84176 0.95010 1.41729 1.04399 1.10167 1.54628 0.72555 1.19548 0.83579 0.93767 1.22977 1.17572 0.87884 0.81935 0.76469 1.90739 1.25288 1.76562 1.53375 1.45855 1.10964 1.04947 1.73344 1.19156 0.85682 0.88280 0.95952 1.21228 0.95086 0.89221 1.53032 0.91940 1.25532 1.03455 0.94549 0.93462 1.69961 1.36638 0.99640 1.50402 0.85907 0.80091 0.78743 0.79486 1.18995 1.19693 1.18617 1.20093 0.96229 0.91181 0.96916 1.20334 0.93817 0.98397 1.02018 1.20787 0.91738 0.97202 1.22941 1.23766 0.96003 0.84210 0.68022 1.90506 1.60354 1.49924 1.38901 0.87330 0.86466 0.88820 0.76128 0.96722 0.96820 0.91742 0.91769 0.92192 0.90565 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.37 10.23 71.24 0.73 0.36 16 2 C 0.16 2.48 7.22 42.30 0.31 2.79 16 3 N -0.51 -10.55 5.90 -171.47 -1.01 -11.57 16 4 H 0.43 6.63 8.13 -92.71 -0.75 5.87 16 5 C -0.09 -2.82 6.98 39.98 0.28 -2.54 16 6 C 0.57 23.04 7.79 86.49 0.67 23.72 16 7 O -0.58 -27.59 14.68 -4.26 -0.06 -27.65 16 8 N -0.70 -28.25 5.54 -470.65 -2.61 -30.86 16 9 C 0.23 11.40 4.50 85.64 0.39 11.79 16 10 C -0.55 -29.65 9.83 25.60 0.25 -29.40 16 11 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.93 -54.39 13.96 21.45 0.30 -54.09 16 14 Si 0.93 43.74 27.47 68.60 1.88 45.62 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 18 C -0.04 -1.15 6.21 -19.51 -0.12 -1.27 16 19 C -0.09 -2.98 9.27 71.23 0.66 -2.32 16 20 C -0.32 -7.16 6.13 -20.18 -0.12 -7.28 16 21 C 0.42 7.76 11.36 70.01 0.80 8.55 16 22 O -0.52 -14.66 15.82 -3.15 -0.05 -14.71 16 23 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.12 -0.07 7.56 -2.39 -0.02 -0.09 16 25 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 26 H 0.40 13.57 7.40 -92.70 -0.69 12.89 16 27 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 28 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.06 2.25 6.40 -2.39 -0.02 2.24 16 32 H 0.08 2.45 6.62 -2.39 -0.02 2.44 16 33 H 0.16 0.98 7.59 -2.91 -0.02 0.95 16 Total: -1.00 -77.83 288.16 2.41 -75.41 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.33 Total: 11.27 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.30 Total: 6.57 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -3.32 Total: -96.51 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.11 Total: -42.36 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -77.83 2.41 -75.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335185019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.466 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds