Wall clock time and date at job start Thu Apr 9 2020 12:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38127 * 126.29452 * 2 1 4 4 C 1.47287 * 126.42839 * 0.02562 * 3 2 1 5 5 O 1.21531 * 119.99932 * 0.28517 * 4 3 2 6 6 O 1.34750 * 120.00334 * 180.27620 * 4 3 2 7 7 C 1.45205 * 117.00363 * 180.02562 * 6 4 3 8 8 C 1.52997 * 117.49898 * 218.62486 * 7 6 4 9 9 C 1.53001 * 117.49578 * 150.00197 * 7 6 4 10 10 C 1.41343 * 107.14685 * 180.25742 * 3 2 1 11 11 N 1.30429 * 108.00976 * 359.74684 * 10 3 2 12 12 N 1.34227 * 126.29821 * 179.81626 * 2 1 3 13 13 C 1.46491 * 125.74071 * 0.02562 * 12 2 1 14 14 C 1.50702 * 109.46957 * 269.71439 * 13 12 2 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.09001 * 109.47303 * 270.18296 * 1 2 3 23 23 H 1.09004 * 109.47706 * 30.18567 * 1 2 3 24 24 H 1.09000 * 109.47395 * 150.18181 * 1 2 3 25 25 H 1.08994 * 115.54478 * 4.33458 * 7 6 4 26 26 H 1.08997 * 117.50021 * 0.02562 * 8 7 6 27 27 H 1.08998 * 117.50033 * 145.02267 * 8 7 6 28 28 H 1.09001 * 117.49562 * 214.97729 * 9 7 6 29 29 H 1.08995 * 117.50218 * 359.97438 * 9 7 6 30 30 H 1.08004 * 125.99586 * 179.74235 * 10 3 2 31 31 H 1.09004 * 109.47166 * 149.71704 * 13 12 2 32 32 H 1.08994 * 109.47507 * 29.71411 * 13 12 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7873 0.0063 6 8 2.8013 3.5097 -0.0052 7 6 2.2981 4.8717 -0.0037 8 6 3.0433 5.9011 -0.8557 9 6 3.1594 5.9423 0.6694 10 6 3.6598 0.6497 -0.0061 11 7 3.6339 -0.6544 -0.0040 12 7 2.3016 -1.0818 0.0035 13 6 1.8498 -2.4753 0.0074 14 6 1.7011 -2.9511 1.4296 15 1 1.9208 -2.2822 2.2486 16 6 1.2787 -4.2385 1.6852 17 7 1.0109 -5.0529 0.6879 18 14 1.0871 -4.8259 3.4481 19 1 0.0903 -3.9758 4.1475 20 1 0.6245 -6.2370 3.4521 21 1 2.3944 -4.7320 4.1461 22 1 -0.3634 0.0033 1.0277 23 1 -0.3635 0.8883 -0.5167 24 1 -0.3634 -0.8916 -0.5110 25 1 1.2158 4.9729 0.0763 26 1 3.9110 5.5558 -1.4176 27 1 2.4513 6.6798 -1.3365 28 1 2.6436 6.7480 1.1918 29 1 4.1035 5.6241 1.1114 30 1 4.5460 1.2669 -0.0116 31 1 2.5822 -3.0961 -0.5087 32 1 0.8890 -2.5473 -0.5021 33 1 0.7141 -5.9588 0.8678 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342661890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:03 Heat of formation + Delta-G solvation = 8.558510 kcal Electronic energy + Delta-G solvation = -17646.740825 eV Core-core repulsion = 14675.142936 eV Total energy + Delta-G solvation = -2971.597890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89963 -39.67525 -37.05822 -34.83305 -33.91972 -32.15971 -31.25205 -27.72431 -26.77523 -23.98613 -22.96104 -22.62594 -21.51541 -20.29408 -18.95525 -17.62732 -16.82391 -16.41588 -15.59727 -15.34712 -14.79407 -14.55570 -14.29394 -14.13063 -13.37111 -12.74222 -12.54487 -12.20115 -12.14810 -12.05382 -11.85333 -11.75174 -11.55644 -11.16693 -10.89412 -10.75914 -10.44396 -10.32091 -9.99436 -9.82990 -9.77808 -8.73381 -8.66788 -8.09226 -6.36469 -4.44688 1.88809 2.67280 2.72077 3.18722 3.22872 3.25087 3.37507 3.50144 3.78755 4.22161 4.57334 4.72635 4.84529 4.98688 5.11854 5.15367 5.36258 5.40002 5.55399 5.64731 5.75142 5.88405 5.98957 6.03085 6.35284 6.40680 6.71366 6.79044 6.86051 7.11263 7.50545 7.69834 7.73417 8.16318 8.32974 8.60243 9.22401 10.71773 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041086 B = 0.004530 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.333482 B = 6180.009896 C = 6222.941245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.319 4.319 4 C 0.553 3.447 5 O -0.529 6.529 6 O -0.327 6.327 7 C 0.012 3.988 8 C -0.179 4.179 9 C -0.174 4.174 10 C 0.080 3.920 11 N -0.296 5.296 12 N -0.310 5.310 13 C 0.250 3.750 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.185 0.815 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 15.981 -2.102 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 C -0.332 4.332 4 C 0.401 3.599 5 O -0.419 6.419 6 O -0.243 6.243 7 C -0.043 4.043 8 C -0.216 4.216 9 C -0.211 4.211 10 C -0.107 4.107 11 N -0.116 5.116 12 N -0.086 5.086 13 C 0.134 3.866 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.736 3.264 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.150 0.850 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.202 0.798 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.761 14.604 -2.158 14.867 hybrid contribution -0.518 0.356 0.951 1.139 sum 1.244 14.960 -1.207 15.060 Atomic orbital electron populations 1.20622 0.86517 1.04027 1.04216 1.21453 0.94991 0.86422 0.93652 1.18803 0.93820 0.89141 1.31442 1.20058 0.83450 0.84880 0.71510 1.90735 1.17938 1.84321 1.48943 1.86508 1.39077 1.14464 1.84282 1.23184 0.97832 0.77331 1.05969 1.23387 1.03523 1.00591 0.94069 1.23358 1.02539 0.99760 0.95468 1.23921 0.96619 0.92146 0.98030 1.77215 0.98259 1.12306 1.23778 1.49428 1.02609 1.08310 1.48258 1.19908 0.96534 0.70614 0.99590 1.21205 1.47651 0.98350 0.90889 0.91635 1.24921 0.94344 0.95925 0.98390 1.69903 1.44178 1.07270 1.31298 0.86363 0.78918 0.77757 0.83389 1.19831 1.20834 1.19850 0.89478 0.88872 0.90424 0.84996 0.87777 0.87776 0.87705 0.87731 0.79834 0.92286 0.92415 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.56 36.00 0.34 -1.34 16 2 C 0.17 3.51 7.01 -81.59 -0.57 2.94 16 3 C -0.32 -6.08 6.13 -105.08 -0.64 -6.72 16 4 C 0.55 9.79 7.95 34.41 0.27 10.07 16 5 O -0.53 -9.92 14.06 -19.29 -0.27 -10.19 16 6 O -0.33 -5.01 10.32 -40.63 -0.42 -5.43 16 7 C 0.01 0.15 6.44 -26.73 -0.17 -0.02 16 8 C -0.18 -1.63 10.49 -26.73 -0.28 -1.91 16 9 C -0.17 -1.59 10.49 -26.73 -0.28 -1.87 16 10 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 11 N -0.30 -6.47 12.50 30.87 0.39 -6.09 16 12 N -0.31 -7.00 3.56 -57.77 -0.21 -7.21 16 13 C 0.25 6.16 5.97 -5.20 -0.03 6.13 16 14 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 15 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 17 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 18 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 23 H 0.09 1.54 6.52 -51.93 -0.34 1.20 16 24 H 0.08 1.31 7.05 -51.93 -0.37 0.95 16 25 H 0.13 1.65 7.07 -51.93 -0.37 1.29 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.18 2.67 8.06 -52.48 -0.42 2.25 16 31 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.06 1.40 7.01 -51.93 -0.36 1.03 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -29.48 296.01 -6.26 -35.74 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.94 Total: 1.25 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.98 Total: -4.54 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.92 Total: -36.91 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.69 Total: -15.62 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.48 -6.26 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342661890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.295 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds