Wall clock time and date at job start Thu Apr 9 2020 12:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38127 * 126.29452 * 2 1 4 4 C 1.47287 * 126.42839 * 0.02562 * 3 2 1 5 5 O 1.21531 * 119.99932 * 0.28517 * 4 3 2 6 6 O 1.34750 * 120.00334 * 180.27620 * 4 3 2 7 7 C 1.45205 * 117.00363 * 180.02562 * 6 4 3 8 8 C 1.52997 * 117.49898 * 218.62486 * 7 6 4 9 9 C 1.53001 * 117.49578 * 150.00197 * 7 6 4 10 10 C 1.41343 * 107.14685 * 180.25742 * 3 2 1 11 11 N 1.30429 * 108.00976 * 359.74684 * 10 3 2 12 12 N 1.34227 * 126.29821 * 179.81626 * 2 1 3 13 13 C 1.46491 * 125.74071 * 0.02562 * 12 2 1 14 14 C 1.50702 * 109.46957 * 269.71439 * 13 12 2 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.09001 * 109.47303 * 270.18296 * 1 2 3 23 23 H 1.09004 * 109.47706 * 30.18567 * 1 2 3 24 24 H 1.09000 * 109.47395 * 150.18181 * 1 2 3 25 25 H 1.08994 * 115.54478 * 4.33458 * 7 6 4 26 26 H 1.08997 * 117.50021 * 0.02562 * 8 7 6 27 27 H 1.08998 * 117.50033 * 145.02267 * 8 7 6 28 28 H 1.09001 * 117.49562 * 214.97729 * 9 7 6 29 29 H 1.08995 * 117.50218 * 359.97438 * 9 7 6 30 30 H 1.08004 * 125.99586 * 179.74235 * 10 3 2 31 31 H 1.09004 * 109.47166 * 149.71704 * 13 12 2 32 32 H 1.08994 * 109.47507 * 29.71411 * 13 12 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7873 0.0063 6 8 2.8013 3.5097 -0.0052 7 6 2.2981 4.8717 -0.0037 8 6 3.0433 5.9011 -0.8557 9 6 3.1594 5.9423 0.6694 10 6 3.6598 0.6497 -0.0061 11 7 3.6339 -0.6544 -0.0040 12 7 2.3016 -1.0818 0.0035 13 6 1.8498 -2.4753 0.0074 14 6 1.7011 -2.9511 1.4296 15 1 1.9208 -2.2822 2.2486 16 6 1.2787 -4.2385 1.6852 17 7 1.0109 -5.0529 0.6879 18 14 1.0871 -4.8259 3.4481 19 1 0.0903 -3.9758 4.1475 20 1 0.6245 -6.2370 3.4521 21 1 2.3944 -4.7320 4.1461 22 1 -0.3634 0.0033 1.0277 23 1 -0.3635 0.8883 -0.5167 24 1 -0.3634 -0.8916 -0.5110 25 1 1.2158 4.9729 0.0763 26 1 3.9110 5.5558 -1.4176 27 1 2.4513 6.6798 -1.3365 28 1 2.6436 6.7480 1.1918 29 1 4.1035 5.6241 1.1114 30 1 4.5460 1.2669 -0.0116 31 1 2.5822 -3.0961 -0.5087 32 1 0.8890 -2.5473 -0.5021 33 1 0.7141 -5.9588 0.8678 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342661890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:03 Heat of formation + Delta-G solvation = -7.992193 kcal Electronic energy + Delta-G solvation = -17647.458518 eV Core-core repulsion = 14675.142936 eV Total energy + Delta-G solvation = -2972.315582 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44587 -40.95721 -38.15449 -35.96599 -35.75872 -33.90202 -32.86975 -29.47109 -28.38560 -25.67721 -24.46685 -23.32237 -22.72138 -21.65031 -20.53653 -19.03553 -18.79723 -17.71005 -16.95005 -16.91073 -16.31045 -15.90230 -15.63882 -15.37872 -14.92927 -14.36513 -14.15371 -13.73843 -13.62123 -13.33436 -13.20511 -13.12545 -13.00914 -12.69311 -12.40845 -12.31615 -11.90036 -11.89646 -11.52885 -11.30566 -10.76294 -10.70953 -10.35370 -9.68629 -8.38836 -6.55225 0.39712 1.15826 1.36746 1.39372 1.40422 1.49763 1.85633 2.18386 2.32589 2.87515 2.93972 3.54683 3.64181 3.81212 3.98940 4.00165 4.11239 4.17783 4.41606 4.56787 4.68121 4.74860 4.78702 4.89556 4.97047 5.04041 5.09871 5.21829 5.47529 5.51210 5.59228 5.72661 5.94792 6.52456 6.69885 6.87782 7.15956 8.69136 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.041086 B = 0.004530 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.333482 B = 6180.009896 C = 6222.941245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 C -0.323 4.323 4 C 0.559 3.441 5 O -0.543 6.543 6 O -0.326 6.326 7 C -0.029 4.029 8 C -0.162 4.162 9 C -0.157 4.157 10 C 0.097 3.903 11 N -0.334 5.334 12 N -0.332 5.332 13 C 0.265 3.735 14 C -0.559 4.559 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.274 1.274 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.223 0.777 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 17.851 -1.432 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.025 3.975 3 C -0.336 4.336 4 C 0.407 3.593 5 O -0.435 6.435 6 O -0.243 6.243 7 C -0.084 4.084 8 C -0.198 4.198 9 C -0.194 4.194 10 C -0.090 4.090 11 N -0.153 5.153 12 N -0.109 5.109 13 C 0.147 3.853 14 C -0.597 4.597 15 H 0.071 0.929 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.142 0.858 26 H 0.125 0.875 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.240 0.760 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.037 16.506 -1.497 16.699 hybrid contribution -0.550 -0.050 0.697 0.890 sum 1.487 16.456 -0.799 16.542 Atomic orbital electron populations 1.20656 0.85052 1.04606 1.04515 1.21960 0.96133 0.86289 0.93164 1.19038 0.93937 0.89881 1.30750 1.19769 0.83445 0.84864 0.71268 1.90721 1.18569 1.84610 1.49587 1.86454 1.38438 1.15590 1.83784 1.23573 0.98281 0.76215 1.10361 1.23534 1.02909 0.99045 0.94346 1.23514 1.01812 0.98242 0.95819 1.24539 0.97755 0.91289 0.95442 1.77168 0.98229 1.14078 1.25808 1.49190 1.03352 1.07926 1.50390 1.19471 0.95625 0.71824 0.98361 1.21364 1.48149 0.98715 0.91484 0.92892 1.25709 0.93724 0.95846 1.02289 1.69984 1.44509 1.07667 1.33168 0.85406 0.78817 0.77712 0.78601 1.19068 1.19752 1.19917 0.89208 0.87766 0.90250 0.85779 0.87520 0.85611 0.85506 0.87483 0.76024 0.94742 0.92577 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.18 9.56 71.23 0.68 -2.50 16 2 C 0.16 6.59 7.01 42.16 0.30 6.88 16 3 C -0.32 -12.09 6.13 -20.16 -0.12 -12.22 16 4 C 0.56 19.19 7.95 70.20 0.56 19.75 16 5 O -0.54 -19.92 14.06 19.74 0.28 -19.64 16 6 O -0.33 -9.46 10.32 -56.61 -0.58 -10.04 16 7 C -0.03 -0.66 6.44 30.59 0.20 -0.46 16 8 C -0.16 -2.45 10.49 30.59 0.32 -2.13 16 9 C -0.16 -2.38 10.49 30.60 0.32 -2.06 16 10 C 0.10 3.48 11.87 85.67 1.02 4.50 16 11 N -0.33 -14.67 12.50 -56.25 -0.70 -15.37 16 12 N -0.33 -15.31 3.56 -336.68 -1.20 -16.51 16 13 C 0.27 13.50 5.97 85.64 0.51 14.01 16 14 C -0.56 -30.43 9.39 25.60 0.24 -30.19 16 15 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 16 C 0.03 1.39 5.46 84.66 0.46 1.85 16 17 N -0.92 -50.58 13.29 21.45 0.28 -50.29 16 18 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 23 H 0.10 3.40 6.52 -2.38 -0.02 3.38 16 24 H 0.08 2.72 7.05 -2.39 -0.02 2.71 16 25 H 0.12 2.96 7.07 -2.39 -0.02 2.95 16 26 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 27 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.22 5.92 8.06 -2.91 -0.02 5.90 16 31 H 0.03 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.06 2.82 7.01 -2.39 -0.02 2.80 16 33 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -63.26 296.01 5.70 -57.55 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.12 Total: 12.72 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 4.48 Total: -2.56 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.62 Total: -82.18 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.31 Total: -29.69 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -63.26 5.70 -57.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342661890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.561 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds