Wall clock time and date at job start Thu Apr 9 2020 12:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33269 * 126.11372 * 2 1 4 4 C 1.30884 * 109.70384 * 180.13402 * 3 2 1 5 5 N 1.34468 * 109.18317 * 359.59691 * 4 3 2 6 6 H 0.96992 * 126.47702 * 180.22137 * 5 4 3 7 7 C 1.36764 * 126.11013 * 179.69144 * 2 1 3 8 8 C 1.46582 * 126.85497 * 0.02562 * 7 2 1 9 9 O 1.21611 * 120.00241 * 359.08104 * 8 7 2 10 10 O 1.34878 * 119.99619 * 179.07633 * 8 7 2 11 11 C 1.45208 * 116.99725 * 184.66146 * 10 8 7 12 12 C 1.50695 * 112.84768 * 53.92003 * 11 10 8 13 13 H 1.08004 * 119.99617 * 245.43109 * 12 11 10 14 14 C 1.37876 * 120.00379 * 65.43436 * 12 11 10 15 15 N 1.31510 * 120.00318 * 185.48008 * 14 12 11 16 16 Si 1.86804 * 119.99657 * 5.48089 * 14 12 11 17 17 H 1.48495 * 109.47074 * 93.76821 * 16 14 12 18 18 H 1.48499 * 109.47019 * 213.76639 * 16 14 12 19 19 H 1.48502 * 109.47143 * 333.76723 * 16 14 12 20 20 C 1.53780 * 113.61329 * 282.61469 * 11 10 8 21 21 C 1.53779 * 87.07745 * 220.02208 * 20 11 10 22 22 C 1.53778 * 113.60996 * 185.11564 * 11 10 8 23 23 H 1.08992 * 109.47516 * 268.48725 * 1 2 3 24 24 H 1.09003 * 109.46525 * 28.49048 * 1 2 3 25 25 H 1.09005 * 109.46505 * 148.48289 * 1 2 3 26 26 H 1.07998 * 125.40495 * 179.86363 * 4 3 2 27 27 H 0.97002 * 120.00501 * 179.97438 * 15 14 12 28 28 H 1.09010 * 113.61378 * 334.56580 * 20 11 10 29 29 H 1.08992 * 113.61760 * 105.47157 * 20 11 10 30 30 H 1.09002 * 113.61094 * 270.87980 * 21 20 11 31 31 H 1.09006 * 113.68953 * 139.99587 * 21 20 11 32 32 H 1.08993 * 113.61384 * 254.52592 * 22 11 10 33 33 H 1.08999 * 113.61973 * 25.35299 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2925 1.0766 0.0000 4 6 3.5481 0.7069 -0.0029 5 7 3.6131 -0.6362 0.0041 6 1 4.4200 -1.1744 0.0069 7 6 2.3131 -1.1049 0.0060 8 6 1.8837 -2.5064 0.0130 9 8 0.6987 -2.7792 0.0308 10 8 2.8028 -3.4933 -0.0005 11 6 2.3070 -4.8547 -0.0976 12 6 1.3892 -5.0605 -1.2750 13 1 0.3483 -5.2988 -1.1131 14 6 1.8783 -4.9446 -2.5589 15 7 1.0579 -5.0171 -3.5842 16 14 3.7064 -4.6847 -2.8420 17 1 4.3649 -5.9975 -3.0609 18 1 3.9050 -3.8259 -4.0371 19 1 4.3024 -4.0240 -1.6531 20 6 1.7466 -5.4020 1.2257 21 6 2.4194 -6.7375 0.8671 22 6 3.4086 -5.9212 0.0186 23 1 -0.3634 -0.0271 1.0272 24 1 -0.3632 0.9033 -0.4902 25 1 -0.3632 -0.8761 -0.5373 26 1 4.3969 1.3745 -0.0057 27 1 1.4019 -4.9352 -4.4875 28 1 2.1688 -4.9239 2.1097 29 1 0.6582 -5.4543 1.2506 30 1 1.7854 -7.4020 0.2801 31 1 2.8826 -7.2369 1.7182 32 1 3.6619 -6.3926 -0.9309 33 1 4.2857 -5.5847 0.5714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345949445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:11 Heat of formation + Delta-G solvation = -2.850709 kcal Electronic energy + Delta-G solvation = -18911.133752 eV Core-core repulsion = 15939.041121 eV Total energy + Delta-G solvation = -2972.092631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92739 -39.40232 -37.23977 -34.59975 -32.93763 -32.40909 -30.84632 -27.29754 -26.50108 -25.03366 -23.67093 -22.38465 -21.12286 -19.31502 -18.67392 -18.26373 -16.84474 -15.57606 -15.50350 -15.38642 -15.03960 -14.40225 -14.03466 -13.79312 -13.10411 -12.87794 -12.68242 -12.47989 -11.86257 -11.81254 -11.62369 -11.10582 -11.08335 -10.75329 -10.25593 -10.16820 -10.07557 -9.87962 -9.79623 -9.55162 -9.10531 -8.83418 -8.63947 -8.25759 -6.26800 -4.32246 1.60766 3.05077 3.10797 3.17131 3.25407 3.35295 3.67540 3.91588 4.28425 4.60839 5.04086 5.15476 5.37646 5.43063 5.46689 5.64885 5.78206 5.94170 6.08851 6.13674 6.22646 6.30515 6.33131 6.40850 6.56204 6.76896 6.83213 6.87438 7.17335 7.35370 7.42834 7.71033 8.06598 8.32804 8.80819 8.90431 9.33582 10.83680 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.009069 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.580729 B = 3086.703754 C = 3306.984231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.086 3.914 3 N -0.502 5.502 4 C 0.204 3.796 5 N -0.545 5.545 6 H 0.427 0.573 7 C -0.058 4.058 8 C 0.534 3.466 9 O -0.467 6.467 10 O -0.376 6.376 11 C 0.201 3.799 12 C -0.503 4.503 13 H 0.088 0.912 14 C 0.083 3.917 15 N -0.874 5.874 16 Si 0.864 3.136 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.241 1.241 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.213 0.787 27 H 0.267 0.733 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 5.815 7.645 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 N -0.223 5.223 4 C -0.079 4.079 5 N -0.150 5.150 6 H 0.266 0.734 7 C -0.172 4.172 8 C 0.375 3.625 9 O -0.352 6.352 10 O -0.294 6.294 11 C 0.167 3.833 12 C -0.540 4.540 13 H 0.106 0.894 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.691 3.309 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.165 1.165 20 C -0.184 4.184 21 C -0.161 4.161 22 C -0.170 4.170 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.229 0.771 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.383 6.453 7.479 11.761 hybrid contribution 1.830 -0.893 -0.477 2.092 sum 8.214 5.561 7.001 12.141 Atomic orbital electron populations 1.20284 0.86450 1.03757 1.02867 1.21043 0.96918 0.86446 1.00353 1.70082 1.00437 1.30452 1.21293 1.25014 0.97355 0.82252 1.03314 1.43331 1.08592 1.08507 1.54531 0.73367 1.20650 0.84280 0.93691 1.18628 1.19132 0.85048 0.83426 0.74849 1.90829 1.17317 1.83249 1.43801 1.86606 1.41059 1.18897 1.82876 1.21702 0.92492 0.74104 0.94960 1.20793 0.97018 1.48605 0.87540 0.89428 1.25013 0.97910 0.93340 0.95993 1.69911 1.34966 1.47290 0.98894 0.87091 0.86480 0.78647 0.78722 1.20352 1.21873 1.16470 1.23338 1.01084 0.96483 0.97477 1.22473 0.98609 0.96187 0.98821 1.23276 0.96925 0.96828 0.99937 0.90963 0.91305 0.88916 0.77100 0.92287 0.91766 0.91086 0.89448 0.92369 0.91360 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 9.82 36.01 0.35 -0.92 16 2 C 0.09 1.58 7.15 -82.50 -0.59 0.99 16 3 N -0.50 -8.33 11.20 -10.63 -0.12 -8.45 16 4 C 0.20 2.67 13.00 -90.58 -1.18 1.49 16 5 N -0.55 -8.05 6.19 -10.81 -0.07 -8.12 16 6 H 0.43 5.22 8.96 -40.82 -0.37 4.86 16 7 C -0.06 -1.11 7.13 -82.16 -0.59 -1.69 16 8 C 0.53 12.08 7.51 34.10 0.26 12.34 16 9 O -0.47 -11.66 13.34 -19.35 -0.26 -11.92 16 10 O -0.38 -8.51 8.18 -40.98 -0.34 -8.85 16 11 C 0.20 4.67 0.25 -90.96 -0.02 4.65 16 12 C -0.50 -13.87 7.11 -34.44 -0.24 -14.11 16 13 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 14 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 15 N -0.87 -26.26 13.96 55.43 0.77 -25.49 16 16 Si 0.86 20.93 24.57 -169.99 -4.18 16.76 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.24 -5.49 5.60 56.52 0.32 -5.17 16 20 C -0.15 -2.97 7.14 -25.92 -0.19 -3.16 16 21 C -0.12 -2.26 7.80 -25.92 -0.20 -2.46 16 22 C -0.13 -2.68 6.03 -25.92 -0.16 -2.84 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.09 1.75 6.60 -51.93 -0.34 1.41 16 26 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 30 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.45 5.65 -51.93 -0.29 1.16 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -33.05 278.25 -6.67 -39.72 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.02 Total: 5.62 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.65 Total: -3.47 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.59 Total: -42.05 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.59 Total: -20.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.18 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.05 -6.67 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345949445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.870 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds