Wall clock time and date at job start Thu Apr 9 2020 12:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33269 * 126.11372 * 2 1 4 4 C 1.30884 * 109.70384 * 180.13402 * 3 2 1 5 5 N 1.34468 * 109.18317 * 359.59691 * 4 3 2 6 6 H 0.96992 * 126.47702 * 180.22137 * 5 4 3 7 7 C 1.36764 * 126.11013 * 179.69144 * 2 1 3 8 8 C 1.46582 * 126.85497 * 0.02562 * 7 2 1 9 9 O 1.21611 * 120.00241 * 359.08104 * 8 7 2 10 10 O 1.34878 * 119.99619 * 179.07633 * 8 7 2 11 11 C 1.45208 * 116.99725 * 184.66146 * 10 8 7 12 12 C 1.50695 * 112.84768 * 53.92003 * 11 10 8 13 13 H 1.08004 * 119.99617 * 245.43109 * 12 11 10 14 14 C 1.37876 * 120.00379 * 65.43436 * 12 11 10 15 15 N 1.31510 * 120.00318 * 185.48008 * 14 12 11 16 16 Si 1.86804 * 119.99657 * 5.48089 * 14 12 11 17 17 H 1.48495 * 109.47074 * 93.76821 * 16 14 12 18 18 H 1.48499 * 109.47019 * 213.76639 * 16 14 12 19 19 H 1.48502 * 109.47143 * 333.76723 * 16 14 12 20 20 C 1.53780 * 113.61329 * 282.61469 * 11 10 8 21 21 C 1.53779 * 87.07745 * 220.02208 * 20 11 10 22 22 C 1.53778 * 113.60996 * 185.11564 * 11 10 8 23 23 H 1.08992 * 109.47516 * 268.48725 * 1 2 3 24 24 H 1.09003 * 109.46525 * 28.49048 * 1 2 3 25 25 H 1.09005 * 109.46505 * 148.48289 * 1 2 3 26 26 H 1.07998 * 125.40495 * 179.86363 * 4 3 2 27 27 H 0.97002 * 120.00501 * 179.97438 * 15 14 12 28 28 H 1.09010 * 113.61378 * 334.56580 * 20 11 10 29 29 H 1.08992 * 113.61760 * 105.47157 * 20 11 10 30 30 H 1.09002 * 113.61094 * 270.87980 * 21 20 11 31 31 H 1.09006 * 113.68953 * 139.99587 * 21 20 11 32 32 H 1.08993 * 113.61384 * 254.52592 * 22 11 10 33 33 H 1.08999 * 113.61973 * 25.35299 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2925 1.0766 0.0000 4 6 3.5481 0.7069 -0.0029 5 7 3.6131 -0.6362 0.0041 6 1 4.4200 -1.1744 0.0069 7 6 2.3131 -1.1049 0.0060 8 6 1.8837 -2.5064 0.0130 9 8 0.6987 -2.7792 0.0308 10 8 2.8028 -3.4933 -0.0005 11 6 2.3070 -4.8547 -0.0976 12 6 1.3892 -5.0605 -1.2750 13 1 0.3483 -5.2988 -1.1131 14 6 1.8783 -4.9446 -2.5589 15 7 1.0579 -5.0171 -3.5842 16 14 3.7064 -4.6847 -2.8420 17 1 4.3649 -5.9975 -3.0609 18 1 3.9050 -3.8259 -4.0371 19 1 4.3024 -4.0240 -1.6531 20 6 1.7466 -5.4020 1.2257 21 6 2.4194 -6.7375 0.8671 22 6 3.4086 -5.9212 0.0186 23 1 -0.3634 -0.0271 1.0272 24 1 -0.3632 0.9033 -0.4902 25 1 -0.3632 -0.8761 -0.5373 26 1 4.3969 1.3745 -0.0057 27 1 1.4019 -4.9352 -4.4875 28 1 2.1688 -4.9239 2.1097 29 1 0.6582 -5.4543 1.2506 30 1 1.7854 -7.4020 0.2801 31 1 2.8826 -7.2369 1.7182 32 1 3.6619 -6.3926 -0.9309 33 1 4.2857 -5.5847 0.5714 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345949445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:11 Heat of formation + Delta-G solvation = -25.323360 kcal Electronic energy + Delta-G solvation = -18912.108239 eV Core-core repulsion = 15939.041121 eV Total energy + Delta-G solvation = -2973.067118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.19430 -41.14068 -38.95230 -36.33783 -34.54877 -34.21816 -32.18524 -28.93961 -28.24470 -26.66636 -25.33718 -23.83270 -22.50102 -20.70249 -20.50520 -19.74650 -18.61792 -17.38257 -17.21243 -16.89080 -16.61869 -15.74917 -15.60688 -15.45881 -14.90307 -14.78372 -13.98464 -13.78416 -13.57655 -13.45952 -13.12787 -12.90472 -12.86827 -12.41108 -12.03628 -11.88112 -11.70891 -11.57980 -11.20927 -11.06975 -11.00645 -10.65908 -10.57676 -9.61297 -8.42723 -6.53139 0.20800 1.25200 1.26312 1.45680 1.76129 1.86091 2.16703 2.25034 2.31726 2.96574 3.50371 3.78546 3.84482 3.95064 4.09349 4.13713 4.25798 4.44447 4.71730 4.76946 4.77644 4.83506 4.91974 5.01743 5.02608 5.12263 5.20523 5.45919 5.51449 5.60494 5.79340 6.28339 6.37206 6.57524 6.82084 7.09828 7.18365 8.72390 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.009069 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.580729 B = 3086.703754 C = 3306.984231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.529 5.529 4 C 0.245 3.755 5 N -0.537 5.537 6 H 0.441 0.559 7 C -0.099 4.099 8 C 0.529 3.471 9 O -0.509 6.509 10 O -0.369 6.369 11 C 0.180 3.820 12 C -0.502 4.502 13 H 0.030 0.970 14 C 0.024 3.976 15 N -0.931 5.931 16 Si 0.926 3.074 17 H -0.260 1.260 18 H -0.300 1.300 19 H -0.213 1.213 20 C -0.144 4.144 21 C -0.109 4.109 22 C -0.125 4.125 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.274 0.726 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.954 7.133 9.222 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 N -0.250 5.250 4 C -0.038 4.038 5 N -0.143 5.143 6 H 0.282 0.718 7 C -0.213 4.213 8 C 0.372 3.628 9 O -0.397 6.397 10 O -0.287 6.287 11 C 0.146 3.854 12 C -0.539 4.539 13 H 0.049 0.951 14 C -0.176 4.176 15 N -0.570 5.570 16 Si 0.749 3.251 17 H -0.185 1.185 18 H -0.227 1.227 19 H -0.135 1.135 20 C -0.182 4.182 21 C -0.147 4.147 22 C -0.162 4.162 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.289 0.711 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.286 7.748 9.085 15.760 hybrid contribution 0.539 -1.166 -0.909 1.574 sum 10.826 6.582 8.176 15.079 Atomic orbital electron populations 1.20246 0.86518 1.03113 1.03370 1.21277 0.97484 0.87011 0.99196 1.70145 1.01832 1.29786 1.23198 1.26255 0.97797 0.81950 0.97842 1.43288 1.07449 1.09255 1.54258 0.71777 1.20191 0.86656 0.91799 1.22654 1.19698 0.84645 0.84745 0.73675 1.90817 1.18879 1.84082 1.45873 1.86557 1.40574 1.18584 1.82992 1.21787 0.94136 0.74914 0.94533 1.20811 0.95366 1.48018 0.89724 0.95145 1.25928 1.03075 0.93105 0.95512 1.70074 1.37448 1.49987 0.99452 0.86118 0.80456 0.79415 0.79107 1.18502 1.22709 1.13510 1.23343 0.99809 0.98001 0.97016 1.22424 0.97516 0.94995 0.99737 1.23312 0.97406 0.95160 1.00361 0.89760 0.89498 0.91987 0.71064 0.92328 0.89288 0.93712 0.91088 0.87766 0.92333 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 9.82 71.24 0.70 -1.85 16 2 C 0.08 3.02 7.15 42.00 0.30 3.32 16 3 N -0.53 -15.95 11.20 -187.55 -2.10 -18.05 16 4 C 0.25 5.23 13.00 180.33 2.35 7.58 16 5 N -0.54 -13.95 6.19 -188.10 -1.16 -15.12 16 6 H 0.44 8.89 8.96 -92.71 -0.83 8.06 16 7 C -0.10 -3.68 7.13 39.97 0.29 -3.39 16 8 C 0.53 24.14 7.51 70.00 0.53 24.66 16 9 O -0.51 -26.77 13.34 19.47 0.26 -26.51 16 10 O -0.37 -16.27 8.18 -57.91 -0.47 -16.74 16 11 C 0.18 8.32 0.25 -11.02 0.00 8.32 16 12 C -0.50 -28.98 7.11 25.60 0.18 -28.80 16 13 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 14 C 0.02 1.38 5.47 84.65 0.46 1.85 16 15 N -0.93 -58.88 13.96 21.45 0.30 -58.58 16 16 Si 0.93 42.98 24.57 68.60 1.69 44.67 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.21 -8.80 5.60 99.48 0.56 -8.24 16 20 C -0.14 -5.77 7.14 31.12 0.22 -5.55 16 21 C -0.11 -3.76 7.80 31.12 0.24 -3.52 16 22 C -0.13 -4.69 6.03 31.12 0.19 -4.51 16 23 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 2.49 6.60 -2.38 -0.02 2.48 16 26 H 0.27 2.13 8.06 -2.91 -0.02 2.11 16 27 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 29 H 0.04 1.99 8.09 -2.39 -0.02 1.97 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.06 2.32 5.65 -2.39 -0.01 2.31 16 33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -77.96 278.25 4.11 -73.85 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.16 Total: 18.37 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.45 Total: -1.89 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -2.97 Total: -91.74 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.21 Total: -43.25 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.69 Total: 44.67 kcal Total: -77.96 4.11 -73.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345949445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.526 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds