Wall clock time and date at job start Thu Apr 9 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38384 * 120.00196 * 2 1 4 4 N 1.32128 * 119.99689 * 179.97438 * 3 2 1 5 5 C 1.32150 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99730 * 179.97438 * 5 4 3 7 7 O 1.45196 * 109.46967 * 179.97438 * 6 5 4 8 8 C 1.34228 * 117.00184 * 179.97438 * 7 6 5 9 9 O 1.20828 * 119.99752 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00248 * 179.97438 * 8 7 6 11 11 H 1.08993 * 109.47392 * 59.99977 * 10 8 7 12 12 C 1.52997 * 109.46883 * 299.99489 * 10 8 7 13 13 C 1.50701 * 109.46889 * 180.02562 * 10 8 7 14 14 H 1.08001 * 120.00305 * 35.10233 * 13 10 8 15 15 C 1.37877 * 120.00064 * 215.10017 * 13 10 8 16 16 N 1.31513 * 120.00271 * 184.91011 * 15 13 10 17 17 Si 1.86807 * 119.99617 * 4.91087 * 15 13 10 18 18 H 1.48503 * 109.47044 * 84.82552 * 17 15 13 19 19 H 1.48503 * 109.47110 * 204.82178 * 17 15 13 20 20 H 1.48499 * 109.47347 * 324.82491 * 17 15 13 21 21 C 1.38339 * 120.00626 * 0.24369 * 5 4 3 22 22 N 1.32121 * 119.99599 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47196 * 89.99491 * 1 2 3 24 24 H 1.08995 * 109.47367 * 209.99668 * 1 2 3 25 25 H 1.09004 * 109.46805 * 330.00149 * 1 2 3 26 26 H 1.07997 * 120.00362 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47363 * 59.99426 * 6 5 4 28 28 H 1.09005 * 109.46644 * 299.99384 * 6 5 4 29 29 H 1.09007 * 109.47373 * 175.05932 * 12 10 8 30 30 H 1.09008 * 109.47055 * 55.06613 * 12 10 8 31 31 H 1.09001 * 109.47890 * 295.06030 * 12 10 8 32 32 H 0.97007 * 119.99862 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.00589 * 179.72793 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5203 1.1983 0.0005 5 6 4.1809 0.0538 0.0005 6 6 5.6880 0.0537 0.0005 7 8 6.1718 -1.3153 0.0011 8 6 7.5025 -1.4913 0.0007 9 8 8.2386 -0.5332 -0.0007 10 6 8.0784 -2.8839 0.0018 11 1 7.7420 -3.4170 -0.8874 12 6 7.6075 -3.6294 1.2521 13 6 9.5834 -2.8051 0.0017 14 1 10.0827 -2.0123 0.5388 15 6 10.3229 -3.7452 -0.6841 16 7 11.6356 -3.7343 -0.6057 17 14 9.4600 -5.0345 -1.7248 18 1 9.1783 -4.4761 -3.0717 19 1 10.3324 -6.2290 -1.8568 20 1 8.1835 -5.4233 -1.0733 21 6 3.4892 -1.1443 -0.0051 22 7 2.1676 -1.1442 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.6591 2.1338 0.0004 27 1 6.0514 0.5676 0.8904 28 1 6.0513 0.5674 -0.8896 29 1 7.9512 -4.6631 1.2100 30 1 6.5185 -3.6103 1.2980 31 1 8.0170 -3.1463 2.1392 32 1 12.1558 -4.3955 -1.0886 33 1 4.0291 -2.0796 -0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348020518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:13 Heat of formation + Delta-G solvation = -69.432987 kcal Electronic energy + Delta-G solvation = -17556.553319 eV Core-core repulsion = 14581.573464 eV Total energy + Delta-G solvation = -2974.979855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29123 -41.35458 -37.74975 -35.83223 -35.73090 -34.04656 -33.40677 -30.71167 -27.31505 -26.90773 -25.82893 -24.75506 -23.02112 -21.51303 -19.32719 -18.85027 -18.17226 -17.81441 -17.55028 -16.89156 -16.56188 -16.17163 -15.88757 -15.03266 -14.71027 -14.44769 -14.12807 -13.73469 -13.58918 -13.50435 -13.15581 -13.03217 -12.97604 -12.66135 -12.63135 -12.29329 -12.21424 -11.86223 -11.78221 -11.32741 -11.10907 -10.78349 -10.14238 -10.05290 -8.32791 -6.42580 -0.33322 0.03349 1.32301 1.38979 1.40253 1.50278 1.54300 2.32915 2.54961 2.91946 3.04871 3.23909 3.42679 3.68401 3.97224 4.02738 4.10868 4.13790 4.35096 4.42952 4.55296 4.67991 4.79603 4.84662 4.87460 5.08021 5.10637 5.31940 5.41597 5.48452 5.51670 6.18947 6.20804 6.66945 6.70051 6.95013 7.21840 8.83991 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.040417 B = 0.004640 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.610487 B = 6033.512391 C = 6421.565578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.075 3.925 3 C 0.059 3.941 4 N -0.451 5.451 5 C 0.055 3.945 6 C 0.122 3.878 7 O -0.353 6.353 8 C 0.474 3.526 9 O -0.535 6.535 10 C 0.021 3.979 11 H 0.084 0.916 12 C -0.129 4.129 13 C -0.520 4.520 14 H 0.031 0.969 15 C 0.016 3.984 16 N -0.942 5.942 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.222 1.222 21 C 0.070 3.930 22 N -0.458 5.458 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.212 0.788 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.271 0.729 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.869 4.776 0.264 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 C -0.103 4.103 4 N -0.167 5.167 5 C -0.083 4.083 6 C 0.047 3.953 7 O -0.270 6.270 8 C 0.318 3.682 9 O -0.423 6.423 10 C 0.002 3.998 11 H 0.102 0.898 12 C -0.187 4.187 13 C -0.558 4.558 14 H 0.050 0.950 15 C -0.182 4.182 16 N -0.581 5.581 17 Si 0.761 3.239 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.145 1.145 21 C -0.088 4.088 22 N -0.174 5.174 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.228 0.772 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.458 4.982 0.230 24.962 hybrid contribution 0.898 -0.083 -0.437 1.002 sum -23.560 4.899 -0.208 24.065 Atomic orbital electron populations 1.20841 0.84524 1.05339 1.04766 1.23132 1.00553 0.89190 0.93816 1.24250 0.89031 1.01059 0.95966 1.67969 1.10591 1.28828 1.09333 1.21499 0.95717 0.91071 1.00021 1.21199 0.88376 0.81678 1.04093 1.86427 1.25327 1.30526 1.84709 1.24951 0.78825 0.94086 0.70293 1.90565 1.61134 1.44315 1.46275 1.19183 0.94368 0.86428 0.99838 0.89800 1.21855 1.00563 1.00284 0.96009 1.20840 0.89327 1.12699 1.32885 0.95038 1.25994 0.95359 0.99823 0.97013 1.70039 1.07198 1.37342 1.43483 0.85857 0.80406 0.78116 0.79514 1.19174 1.20679 1.14493 1.23700 0.90424 0.99933 0.94781 1.68465 1.08404 1.30571 1.09941 0.88493 0.90318 0.87230 0.77197 0.89281 0.89343 0.91587 0.90573 0.93818 0.92003 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.19 71.24 0.73 -0.12 16 2 C 0.07 1.33 6.79 42.55 0.29 1.62 16 3 C 0.06 1.03 10.88 84.68 0.92 1.96 16 4 N -0.45 -11.31 10.42 -183.30 -1.91 -13.22 16 5 C 0.05 1.51 6.78 42.54 0.29 1.80 16 6 C 0.12 3.77 6.02 71.24 0.43 4.20 16 7 O -0.35 -12.23 8.50 -51.40 -0.44 -12.67 16 8 C 0.47 20.75 7.25 71.24 0.52 21.27 16 9 O -0.54 -27.47 15.52 21.96 0.34 -27.13 16 10 C 0.02 0.96 2.41 -12.29 -0.03 0.93 16 11 H 0.08 3.49 5.29 -2.39 -0.01 3.48 16 12 C -0.13 -4.85 9.14 71.98 0.66 -4.19 16 13 C -0.52 -29.85 8.36 25.60 0.21 -29.63 16 14 H 0.03 2.11 7.62 -2.91 -0.02 2.08 16 15 C 0.02 0.93 5.47 84.65 0.46 1.40 16 16 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 17 Si 0.94 40.92 26.99 68.60 1.85 42.77 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.22 -8.30 6.82 99.48 0.68 -7.62 16 21 C 0.07 1.81 10.56 84.67 0.89 2.71 16 22 N -0.46 -11.01 10.42 -183.29 -1.91 -12.92 16 23 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.33 8.09 -2.38 -0.02 0.31 16 26 H 0.21 1.79 8.06 -2.91 -0.02 1.77 16 27 H 0.09 2.79 8.13 -2.39 -0.02 2.77 16 28 H 0.09 2.78 8.13 -2.38 -0.02 2.77 16 29 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 30 H 0.08 2.28 8.00 -2.38 -0.02 2.26 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 33 H 0.18 4.53 6.99 -2.91 -0.02 4.51 16 Total: -1.00 -73.56 291.87 4.69 -68.86 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.09 Total: 10.48 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.37 Total: 1.93 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.52 Total: -84.24 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.80 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.85 Total: 42.77 kcal Total: -73.56 4.69 -68.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348020518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.569 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds