Wall clock time and date at job start Thu Apr 9 2020 12:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.39509 * 119.99769 * 179.97438 * 14 12 2 16 16 N 1.30724 * 126.89285 * 0.02562 * 15 14 12 17 17 O 1.20909 * 111.47335 * 179.97438 * 16 15 14 18 18 C 1.34084 * 111.74771 * 359.97438 * 17 16 15 19 19 C 1.35248 * 106.61198 * 359.75000 * 18 17 16 20 20 C 1.50697 * 128.02475 * 180.27158 * 19 18 17 21 21 C 1.52995 * 117.49955 * 8.86814 * 20 19 18 22 22 C 1.53002 * 117.49707 * 300.20632 * 20 19 18 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 28 28 H 1.08000 * 126.69829 * 179.97438 * 18 17 16 29 29 H 1.08997 * 115.54850 * 154.53959 * 20 19 18 30 30 H 1.08995 * 117.50197 * 0.02562 * 21 20 19 31 31 H 1.08999 * 117.49776 * 145.02333 * 21 20 19 32 32 H 1.09005 * 117.49807 * 214.98391 * 22 20 19 33 33 H 1.08998 * 117.49981 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1714 -0.9080 3.5935 16 7 2.9258 -1.9749 3.6306 17 8 3.1628 -2.3101 4.7679 18 6 2.5843 -1.4911 5.6580 19 6 1.9255 -0.5490 4.9455 20 6 1.1160 0.6109 5.4654 21 6 1.1738 0.8957 6.9675 22 6 -0.0898 0.2901 6.3511 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 1.1494 0.5388 2.5436 28 1 2.6373 -1.5665 6.7341 29 1 1.0340 1.4655 4.7939 30 1 1.7977 0.2446 7.5796 31 1 1.1294 1.9378 7.2842 32 1 -0.9648 0.9340 6.2624 33 1 -0.2976 -0.7598 6.5573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533973840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:17 Heat of formation + Delta-G solvation = 51.845265 kcal Electronic energy + Delta-G solvation = -17956.388027 eV Core-core repulsion = 14986.667192 eV Total energy + Delta-G solvation = -2969.720835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.63579 -39.12257 -37.73618 -34.87981 -33.83245 -31.85128 -31.10632 -30.11262 -25.20319 -24.62454 -23.87256 -22.64065 -21.55217 -20.65217 -19.02883 -18.32908 -17.31843 -16.39526 -16.01977 -15.92619 -15.26277 -14.55352 -14.32164 -14.20836 -13.59410 -13.11205 -12.65437 -12.12522 -11.84255 -11.78365 -11.48057 -11.18773 -11.03625 -10.93829 -10.73651 -10.73031 -10.50378 -10.29382 -10.01342 -9.14095 -9.06421 -8.78202 -8.39772 -8.25616 -6.08026 -4.11667 1.62487 2.37238 3.25111 3.35720 3.37562 3.43219 3.47564 3.63324 3.78772 4.37881 4.42539 4.48330 4.69025 4.78427 5.05752 5.25529 5.29800 5.34383 5.41098 5.61754 5.83443 5.86290 5.92873 6.06724 6.52069 6.72890 6.79997 6.91704 7.36727 7.64266 7.80674 7.99607 8.23542 8.70676 8.96926 9.03331 9.54153 10.99639 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.037369 B = 0.005195 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.098231 B = 5388.049014 C = 5997.606485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.036 3.964 3 H 0.057 0.943 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.509 3.491 13 O -0.494 6.494 14 N -0.646 5.646 15 C 0.259 3.741 16 N -0.351 5.351 17 O 0.094 5.906 18 C -0.058 4.058 19 C -0.190 4.190 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.170 4.170 23 H 0.033 0.967 24 H 0.013 0.987 25 H 0.097 0.903 26 H 0.262 0.738 27 H 0.416 0.584 28 H 0.210 0.790 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 2.425 18.571 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 H 0.075 0.925 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.299 3.701 13 O -0.363 6.363 14 N -0.301 5.301 15 C 0.008 3.992 16 N -0.066 5.066 17 O 0.034 5.966 18 C -0.140 4.140 19 C -0.196 4.196 20 C -0.097 4.097 21 C -0.208 4.208 22 C -0.207 4.207 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.253 0.747 28 H 0.227 0.773 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.484 1.007 17.324 17.416 hybrid contribution -0.475 0.692 -0.266 0.881 sum -1.960 1.700 17.058 17.254 Atomic orbital electron populations 1.21785 0.96191 1.00116 1.01169 1.18900 0.94340 0.96899 0.88346 0.92520 1.21077 1.31398 1.13013 0.88833 0.90732 1.24932 0.94963 0.95026 0.99132 1.69850 1.36890 1.22961 1.23821 0.86459 0.79344 0.79725 0.81384 1.20113 1.21291 1.20111 1.22525 0.79006 0.84930 0.83677 1.90646 1.35006 1.25190 1.85465 1.43558 1.52708 1.30991 1.02807 1.20661 0.97444 0.93139 0.88001 1.74510 1.19211 1.15111 0.97817 1.84947 1.56419 1.44743 1.10456 1.25398 0.98295 0.92339 0.97999 1.20087 1.07376 1.01342 0.90812 1.20071 0.99744 0.96368 0.93567 1.23023 1.01186 1.02304 0.94312 1.23100 0.92188 1.02285 1.03096 0.94773 0.96843 0.88462 0.92783 0.74656 0.77308 0.86555 0.88631 0.88155 0.88146 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.73 16 2 C 0.04 0.91 2.64 -92.92 -0.25 0.66 16 3 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.51 12.13 7.11 -10.99 -0.08 12.06 16 13 O -0.49 -13.70 14.23 5.56 0.08 -13.62 16 14 N -0.65 -12.19 5.32 -11.43 -0.06 -12.25 16 15 C 0.26 4.70 7.90 -154.81 -1.22 3.48 16 16 N -0.35 -7.11 10.39 31.19 0.32 -6.78 16 17 O 0.09 1.50 11.19 17.06 0.19 1.69 16 18 C -0.06 -0.67 11.67 29.67 0.35 -0.33 16 19 C -0.19 -2.51 5.99 -104.24 -0.62 -3.14 16 20 C -0.08 -0.78 6.32 -91.77 -0.58 -1.36 16 21 C -0.17 -1.23 10.06 -26.69 -0.27 -1.50 16 22 C -0.17 -1.36 10.24 -26.69 -0.27 -1.63 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.01 0.24 7.56 -51.93 -0.39 -0.16 16 25 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.42 6.35 8.24 -40.82 -0.34 6.02 16 28 H 0.21 1.35 7.38 -52.49 -0.39 0.96 16 29 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 0.58 7.18 -51.93 -0.37 0.21 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -33.70 288.12 -6.35 -40.05 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.83 Total: 1.54 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -3.00 Total: -7.61 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.89 Total: -43.33 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.27 Total: -11.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.70 -6.35 -40.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533973840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.896 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds