Wall clock time and date at job start Thu Apr 9 2020 12:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.39509 * 119.99769 * 179.97438 * 14 12 2 16 16 N 1.30724 * 126.89285 * 0.02562 * 15 14 12 17 17 O 1.20909 * 111.47335 * 179.97438 * 16 15 14 18 18 C 1.34084 * 111.74771 * 359.97438 * 17 16 15 19 19 C 1.35248 * 106.61198 * 359.75000 * 18 17 16 20 20 C 1.50697 * 128.02475 * 180.27158 * 19 18 17 21 21 C 1.52995 * 117.49955 * 8.86814 * 20 19 18 22 22 C 1.53002 * 117.49707 * 300.20632 * 20 19 18 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 28 28 H 1.08000 * 126.69829 * 179.97438 * 18 17 16 29 29 H 1.08997 * 115.54850 * 154.53959 * 20 19 18 30 30 H 1.08995 * 117.50197 * 0.02562 * 21 20 19 31 31 H 1.08999 * 117.49776 * 145.02333 * 21 20 19 32 32 H 1.09005 * 117.49807 * 214.98391 * 22 20 19 33 33 H 1.08998 * 117.49981 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1714 -0.9080 3.5935 16 7 2.9258 -1.9749 3.6306 17 8 3.1628 -2.3101 4.7679 18 6 2.5843 -1.4911 5.6580 19 6 1.9255 -0.5490 4.9455 20 6 1.1160 0.6109 5.4654 21 6 1.1738 0.8957 6.9675 22 6 -0.0898 0.2901 6.3511 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 1.1494 0.5388 2.5436 28 1 2.6373 -1.5665 6.7341 29 1 1.0340 1.4655 4.7939 30 1 1.7977 0.2446 7.5796 31 1 1.1294 1.9378 7.2842 32 1 -0.9648 0.9340 6.2624 33 1 -0.2976 -0.7598 6.5573 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533973840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:16 Heat of formation + Delta-G solvation = 29.971808 kcal Electronic energy + Delta-G solvation = -17957.336531 eV Core-core repulsion = 14986.667192 eV Total energy + Delta-G solvation = -2970.669339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.91012 -40.90675 -38.49554 -36.41473 -35.87800 -33.35384 -32.40735 -31.87837 -27.27785 -25.63752 -25.52165 -23.37892 -22.95384 -21.83902 -20.47593 -19.63832 -18.62600 -18.33179 -17.73233 -17.23868 -16.46814 -16.21728 -16.05641 -15.22932 -15.01228 -14.65273 -14.48402 -13.66694 -13.04541 -12.98762 -12.86348 -12.69017 -12.66841 -12.38897 -12.29818 -12.22124 -12.05832 -11.90428 -11.24914 -11.13807 -10.73992 -10.46871 -10.13592 -9.66314 -8.20828 -6.31660 0.61190 0.99425 1.38980 1.40459 1.48866 1.81545 1.98907 2.41078 2.52151 3.02181 3.09112 3.33943 3.58665 3.96572 4.05134 4.07998 4.22400 4.39993 4.58722 4.66210 4.84540 4.87066 4.91805 4.97522 5.09946 5.23445 5.33318 5.38759 5.43141 5.67839 5.84793 6.09440 6.38217 6.74646 7.17132 7.36754 7.58531 8.85011 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.037369 B = 0.005195 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.098231 B = 5388.049014 C = 5997.606485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.278 1.278 12 C 0.513 3.487 13 O -0.544 6.544 14 N -0.630 5.630 15 C 0.222 3.778 16 N -0.406 5.406 17 O 0.092 5.908 18 C -0.038 4.038 19 C -0.182 4.182 20 C -0.106 4.106 21 C -0.149 4.149 22 C -0.165 4.165 23 H 0.021 0.979 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.268 0.732 27 H 0.433 0.567 28 H 0.267 0.733 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 3.336 20.911 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.203 1.203 12 C 0.302 3.698 13 O -0.417 6.417 14 N -0.285 5.285 15 C -0.027 4.027 16 N -0.121 5.121 17 O 0.031 5.969 18 C -0.119 4.119 19 C -0.188 4.188 20 C -0.125 4.125 21 C -0.186 4.186 22 C -0.202 4.202 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.273 0.727 28 H 0.282 0.718 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.306 1.968 19.697 19.928 hybrid contribution -0.235 0.434 -0.830 0.966 sum -2.541 2.402 18.867 19.188 Atomic orbital electron populations 1.21600 0.94402 0.99614 1.02299 1.18819 0.95711 0.96082 0.88126 0.93070 1.21192 1.32221 1.12963 0.91094 0.93668 1.25542 0.94997 0.95695 1.01239 1.69912 1.36726 1.23221 1.24644 0.85644 0.78621 0.78719 0.78855 1.20319 1.19428 1.20340 1.22187 0.78450 0.84189 0.84962 1.90616 1.37318 1.27283 1.86475 1.42999 1.52291 1.31191 1.02009 1.21097 0.98633 0.93700 0.89294 1.74504 1.20713 1.16690 1.00160 1.84867 1.56591 1.45369 1.10072 1.26406 0.95758 0.90227 0.99520 1.20424 1.07511 1.02569 0.88270 1.20169 1.01369 0.95460 0.95518 1.23194 1.00114 1.03559 0.91744 1.23185 0.92458 1.02702 1.01893 0.95961 0.92530 0.90363 0.92308 0.72732 0.71763 0.86601 0.86884 0.86713 0.87161 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 2 C 0.03 1.73 2.64 -12.29 -0.03 1.70 16 3 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.54 -31.73 8.37 25.60 0.21 -31.52 16 5 H 0.05 2.89 6.75 -2.91 -0.02 2.87 16 6 C 0.03 1.42 5.30 84.66 0.45 1.87 16 7 N -0.91 -50.50 11.32 21.45 0.24 -50.26 16 8 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.51 25.25 7.11 87.66 0.62 25.87 16 13 O -0.54 -31.67 14.23 -3.03 -0.04 -31.71 16 14 N -0.63 -23.99 5.32 -309.52 -1.65 -25.63 16 15 C 0.22 8.06 7.90 134.10 1.06 9.12 16 16 N -0.41 -16.73 10.39 -56.31 -0.58 -17.31 16 17 O 0.09 2.87 11.19 71.23 0.80 3.66 16 18 C -0.04 -0.77 11.67 67.13 0.78 0.02 16 19 C -0.18 -4.42 5.99 -19.62 -0.12 -4.54 16 20 C -0.11 -1.79 6.32 -11.54 -0.07 -1.86 16 21 C -0.15 -1.47 10.06 30.62 0.31 -1.16 16 22 C -0.17 -2.05 10.24 30.62 0.31 -1.73 16 23 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.06 2.02 7.56 -2.39 -0.02 2.00 16 25 H 0.08 3.88 6.07 -2.39 -0.01 3.87 16 26 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 27 H 0.43 12.94 8.24 -92.71 -0.76 12.18 16 28 H 0.27 1.94 7.38 -2.91 -0.02 1.92 16 29 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 0.73 7.18 -2.39 -0.02 0.71 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.94 288.12 5.34 -71.60 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.38 Total: 9.22 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.17 Total: -7.10 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -1.99 Total: -93.20 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 0.75 Total: -28.05 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.94 5.34 -71.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533973840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.569 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds