Wall clock time and date at job start Thu Apr 9 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.50703 * 109.47320 * 184.99701 * 3 2 1 5 5 O 1.20823 * 120.00103 * 0.02562 * 4 3 2 6 6 O 1.34231 * 119.99776 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47245 * 240.00077 * 2 1 3 8 8 C 1.36931 * 119.99788 * 59.99973 * 7 2 1 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 2 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 2 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48508 * 109.46872 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 119.99997 * 12 10 8 15 15 H 1.48498 * 109.47018 * 240.00044 * 12 10 8 16 16 C 1.50705 * 109.47324 * 120.00224 * 2 1 3 17 17 C 1.38650 * 120.78435 * 269.72209 * 16 2 1 18 18 C 1.38209 * 119.15779 * 179.79786 * 17 16 2 19 19 N 1.31869 * 120.76479 * 0.47955 * 18 17 16 20 20 C 1.31873 * 121.72454 * 359.75140 * 19 18 17 21 21 C 1.38204 * 120.76509 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.46677 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46971 * 299.99577 * 1 2 3 24 24 H 1.09001 * 109.46983 * 59.99723 * 1 2 3 25 25 H 1.08996 * 109.47341 * 305.00217 * 3 2 1 26 26 H 1.09004 * 109.47204 * 64.99871 * 3 2 1 27 27 H 0.96704 * 116.99472 * 180.02562 * 6 4 3 28 28 H 0.97000 * 119.99792 * 239.99767 * 7 2 1 29 29 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.42705 * 359.97438 * 17 16 2 31 31 H 1.08000 * 119.62126 * 180.20780 * 18 17 16 32 32 H 1.08002 * 119.61575 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.41979 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4443 -0.1238 5 8 4.1427 0.3991 -0.2042 6 8 4.2121 2.6071 -0.1456 7 7 2.0183 -0.6906 -1.1962 8 6 1.6875 -0.2227 -2.4399 9 1 1.0669 0.6556 -2.5390 10 6 2.1550 -0.8738 -3.5733 11 7 2.9117 -1.9438 -3.4525 12 14 1.7101 -0.2310 -5.2699 13 1 0.8547 0.9753 -5.1335 14 1 2.9503 0.1216 -6.0065 15 1 0.9710 -1.2793 -6.0182 16 6 2.0323 -0.7105 1.2305 17 6 2.2744 -0.0125 2.4038 18 6 2.7307 -0.6985 3.5134 19 7 2.9447 -1.9987 3.4618 20 6 2.7299 -2.6937 2.3618 21 6 2.2691 -2.0764 1.2143 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 1.9816 -0.8417 26 1 1.7516 1.9299 0.9314 27 1 5.1745 2.5577 -0.2268 28 1 2.5760 -1.4792 -1.1072 29 1 3.2381 -2.3990 -4.2445 30 1 2.1057 1.0532 2.4510 31 1 2.9185 -0.1628 4.4322 32 1 2.9170 -3.7573 2.3575 33 1 2.0955 -2.6510 0.3164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592319318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:24 Heat of formation + Delta-G solvation = -35.603598 kcal Electronic energy + Delta-G solvation = -18915.611056 eV Core-core repulsion = 15942.098154 eV Total energy + Delta-G solvation = -2973.512902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32486 -39.21148 -36.72808 -35.17584 -32.83997 -30.98057 -30.78972 -29.02028 -27.75166 -24.60096 -23.18835 -22.65733 -21.43598 -19.10010 -17.54982 -17.35742 -16.43790 -15.85231 -15.62720 -15.15295 -14.96542 -14.43583 -13.68908 -13.57051 -13.45102 -13.18629 -12.76426 -12.45166 -11.81636 -11.69854 -11.49504 -11.30814 -10.95149 -10.85720 -10.80433 -10.64819 -10.04060 -9.85068 -9.62344 -9.18054 -9.09279 -8.90056 -8.74685 -7.03429 -5.81466 -3.10932 1.52484 1.71158 3.01329 3.38332 3.43225 3.46377 3.66735 4.21494 4.51571 4.78286 4.99184 5.05071 5.32707 5.43412 5.49130 5.57365 5.64951 5.83013 5.90259 6.03170 6.13750 6.15357 6.21350 6.36344 6.39542 6.64054 6.82074 6.91723 7.10934 7.12719 7.61667 8.31574 8.34926 8.61607 9.48129 10.02903 10.39509 11.40390 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023698 B = 0.008360 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.238430 B = 3348.674309 C = 3788.034056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.244 3.756 3 C -0.121 4.121 4 C 0.477 3.523 5 O -0.478 6.478 6 O -0.535 6.535 7 N -0.703 5.703 8 C -0.245 4.245 9 H 0.071 0.929 10 C -0.006 4.006 11 N -0.922 5.922 12 Si 0.903 3.097 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 C -0.006 4.006 17 C -0.182 4.182 18 C 0.090 3.910 19 N -0.498 5.498 20 C 0.094 3.906 21 C -0.149 4.149 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.399 0.601 28 H 0.392 0.608 29 H 0.255 0.745 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 5.868 10.390 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.152 3.848 3 C -0.162 4.162 4 C 0.317 3.683 5 O -0.362 6.362 6 O -0.347 6.347 7 N -0.345 5.345 8 C -0.376 4.376 9 H 0.089 0.911 10 C -0.203 4.203 11 N -0.569 5.569 12 Si 0.734 3.266 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.015 4.015 17 C -0.202 4.202 18 C -0.067 4.067 19 N -0.208 5.208 20 C -0.062 4.062 21 C -0.169 4.169 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.124 0.876 26 H 0.107 0.893 27 H 0.256 0.744 28 H 0.229 0.771 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.179 5.185 10.965 12.323 hybrid contribution 0.434 0.598 -1.973 2.106 sum -1.745 5.783 8.992 10.832 Atomic orbital electron populations 1.22213 0.95331 1.02285 1.00853 1.18298 0.92691 0.88178 0.85676 1.22118 0.88031 1.02079 1.03943 1.23292 0.91468 0.80761 0.72773 1.90737 1.69808 1.32832 1.42831 1.84527 1.26269 1.37415 1.86499 1.42514 1.60141 1.32837 0.98998 1.19143 1.25973 1.09265 0.83245 0.91076 1.24733 1.00006 0.97883 0.97694 1.69686 1.38387 1.20563 1.28248 0.86194 0.77498 0.77961 0.84942 1.20522 1.21946 1.21787 1.20420 0.92472 0.94008 0.94552 1.21979 1.03124 1.00991 0.94153 1.22537 0.95949 0.90474 0.97725 1.67592 1.16120 1.08453 1.28652 1.22675 0.95225 0.99948 0.88383 1.22082 0.99521 0.95372 0.99886 0.92163 0.93821 0.91489 0.87635 0.89322 0.74365 0.77101 0.93512 0.85417 0.83524 0.83175 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.42 37.16 0.31 -2.14 16 2 C 0.24 4.56 0.61 -132.97 -0.08 4.48 16 3 C -0.12 -2.05 4.21 -27.88 -0.12 -2.16 16 4 C 0.48 8.97 7.57 36.01 0.27 9.24 16 5 O -0.48 -10.86 14.77 -18.75 -0.28 -11.14 16 6 O -0.53 -8.26 13.42 -39.26 -0.53 -8.79 16 7 N -0.70 -16.66 3.39 -48.30 -0.16 -16.82 16 8 C -0.25 -6.37 8.71 -15.06 -0.13 -6.51 16 9 H 0.07 1.76 6.74 -52.49 -0.35 1.41 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.92 -27.37 13.06 55.49 0.72 -26.64 16 12 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 C -0.01 -0.11 3.50 -104.32 -0.37 -0.47 16 17 C -0.18 -2.77 8.89 -39.44 -0.35 -3.12 16 18 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 19 N -0.50 -8.28 10.36 -13.25 -0.14 -8.41 16 20 C 0.09 1.55 11.18 -17.55 -0.20 1.35 16 21 C -0.15 -2.69 9.05 -39.44 -0.36 -3.05 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.15 7.27 -51.93 -0.38 0.77 16 25 H 0.11 1.80 7.45 -51.93 -0.39 1.41 16 26 H 0.09 1.17 6.30 -51.93 -0.33 0.85 16 27 H 0.40 4.66 9.10 45.56 0.41 5.08 16 28 H 0.39 10.32 5.88 -40.82 -0.24 10.08 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 1.61 6.18 -52.49 -0.32 1.29 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.14 2.73 6.82 -52.49 -0.36 2.37 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -32.63 281.15 -5.25 -37.88 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -2.78 Total: 14.37 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.31 Total: -1.50 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.42 Total: -51.88 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.80 Total: -19.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.63 -5.25 -37.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592319318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.275 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds