Wall clock time and date at job start Thu Apr 9 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.50703 * 109.47320 * 184.99701 * 3 2 1 5 5 O 1.20823 * 120.00103 * 0.02562 * 4 3 2 6 6 O 1.34231 * 119.99776 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47245 * 240.00077 * 2 1 3 8 8 C 1.36931 * 119.99788 * 59.99973 * 7 2 1 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 2 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 2 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48508 * 109.46872 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 119.99997 * 12 10 8 15 15 H 1.48498 * 109.47018 * 240.00044 * 12 10 8 16 16 C 1.50705 * 109.47324 * 120.00224 * 2 1 3 17 17 C 1.38650 * 120.78435 * 269.72209 * 16 2 1 18 18 C 1.38209 * 119.15779 * 179.79786 * 17 16 2 19 19 N 1.31869 * 120.76479 * 0.47955 * 18 17 16 20 20 C 1.31873 * 121.72454 * 359.75140 * 19 18 17 21 21 C 1.38204 * 120.76509 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.46677 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46971 * 299.99577 * 1 2 3 24 24 H 1.09001 * 109.46983 * 59.99723 * 1 2 3 25 25 H 1.08996 * 109.47341 * 305.00217 * 3 2 1 26 26 H 1.09004 * 109.47204 * 64.99871 * 3 2 1 27 27 H 0.96704 * 116.99472 * 180.02562 * 6 4 3 28 28 H 0.97000 * 119.99792 * 239.99767 * 7 2 1 29 29 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.42705 * 359.97438 * 17 16 2 31 31 H 1.08000 * 119.62126 * 180.20780 * 18 17 16 32 32 H 1.08002 * 119.61575 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.41979 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4443 -0.1238 5 8 4.1427 0.3991 -0.2042 6 8 4.2121 2.6071 -0.1456 7 7 2.0183 -0.6906 -1.1962 8 6 1.6875 -0.2227 -2.4399 9 1 1.0669 0.6556 -2.5390 10 6 2.1550 -0.8738 -3.5733 11 7 2.9117 -1.9438 -3.4525 12 14 1.7101 -0.2310 -5.2699 13 1 0.8547 0.9753 -5.1335 14 1 2.9503 0.1216 -6.0065 15 1 0.9710 -1.2793 -6.0182 16 6 2.0323 -0.7105 1.2305 17 6 2.2744 -0.0125 2.4038 18 6 2.7307 -0.6985 3.5134 19 7 2.9447 -1.9987 3.4618 20 6 2.7299 -2.6937 2.3618 21 6 2.2691 -2.0764 1.2143 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 1.9816 -0.8417 26 1 1.7516 1.9299 0.9314 27 1 5.1745 2.5577 -0.2268 28 1 2.5760 -1.4792 -1.1072 29 1 3.2381 -2.3990 -4.2445 30 1 2.1057 1.0532 2.4510 31 1 2.9185 -0.1628 4.4322 32 1 2.9170 -3.7573 2.3575 33 1 2.0955 -2.6510 0.3164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592319318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:24 Heat of formation + Delta-G solvation = -58.874058 kcal Electronic energy + Delta-G solvation = -18916.620139 eV Core-core repulsion = 15942.098154 eV Total energy + Delta-G solvation = -2974.521985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68446 -40.56383 -38.17415 -36.63529 -34.66981 -32.28058 -32.25074 -30.66561 -29.15656 -26.33702 -24.58030 -24.06940 -22.80458 -20.54742 -19.28141 -18.76206 -17.93593 -17.32370 -16.94308 -16.59074 -16.38252 -16.05185 -15.27544 -15.08782 -14.87068 -14.50552 -14.23694 -13.88579 -13.26343 -13.10797 -13.05403 -12.81199 -12.71305 -12.44205 -12.32476 -12.18170 -11.80491 -11.58851 -11.23931 -11.01200 -10.38376 -10.33113 -9.98647 -8.96442 -7.88476 -5.15536 0.29297 0.42328 1.46796 1.46953 1.56143 1.57463 2.37753 2.57522 2.96595 3.44154 3.61791 3.65729 3.76518 3.95763 4.21608 4.21943 4.35033 4.48333 4.62666 4.77462 4.82306 4.85990 4.95468 5.00567 5.07274 5.27076 5.44948 5.54474 5.63543 5.84986 5.87244 6.30841 7.08554 7.27029 7.39402 8.14622 8.38442 9.35521 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023698 B = 0.008360 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.238430 B = 3348.674309 C = 3788.034056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.235 3.765 3 C -0.120 4.120 4 C 0.476 3.524 5 O -0.526 6.526 6 O -0.523 6.523 7 N -0.716 5.716 8 C -0.222 4.222 9 H 0.086 0.914 10 C -0.078 4.078 11 N -0.968 5.968 12 Si 0.962 3.038 13 H -0.259 1.259 14 H -0.304 1.304 15 H -0.298 1.298 16 C -0.019 4.019 17 C -0.177 4.177 18 C 0.092 3.908 19 N -0.512 5.512 20 C 0.090 3.910 21 C -0.173 4.173 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.416 0.584 28 H 0.375 0.625 29 H 0.245 0.755 30 H 0.161 0.839 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 8.520 12.238 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.145 3.855 3 C -0.159 4.159 4 C 0.319 3.681 5 O -0.414 6.414 6 O -0.336 6.336 7 N -0.356 5.356 8 C -0.354 4.354 9 H 0.104 0.896 10 C -0.271 4.271 11 N -0.619 5.619 12 Si 0.793 3.207 13 H -0.183 1.183 14 H -0.232 1.232 15 H -0.226 1.226 16 C -0.027 4.027 17 C -0.197 4.197 18 C -0.065 4.065 19 N -0.222 5.222 20 C -0.066 4.066 21 C -0.193 4.193 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.276 0.724 28 H 0.208 0.792 29 H 0.054 0.946 30 H 0.179 0.821 31 H 0.203 0.797 32 H 0.184 0.816 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.159 7.917 12.854 15.423 hybrid contribution 0.739 -0.137 -2.379 2.495 sum -2.420 7.780 10.475 13.271 Atomic orbital electron populations 1.22126 0.93564 1.01817 1.02464 1.18619 0.93710 0.88937 0.84269 1.22120 0.86771 1.00581 1.06453 1.23686 0.92315 0.80623 0.71500 1.90750 1.70891 1.34587 1.45144 1.84477 1.27812 1.35643 1.85700 1.42691 1.59953 1.32868 1.00108 1.19571 1.23475 1.08220 0.84121 0.89618 1.25482 1.01530 0.98869 1.01176 1.69863 1.41167 1.22651 1.28229 0.85226 0.76753 0.77816 0.80947 1.18262 1.23221 1.22603 1.20457 0.93241 0.93825 0.95191 1.22272 1.02037 1.02421 0.92956 1.23216 0.94205 0.89977 0.99063 1.67680 1.16578 1.09616 1.28342 1.22892 0.94782 1.00911 0.87971 1.21993 1.01539 0.96119 0.99645 0.93767 0.89938 0.92037 0.87439 0.84644 0.72404 0.79153 0.94625 0.82132 0.79672 0.81602 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.42 71.98 0.61 -3.74 16 2 C 0.24 8.39 0.61 2.86 0.00 8.39 16 3 C -0.12 -3.63 4.21 29.85 0.13 -3.50 16 4 C 0.48 16.84 7.57 71.24 0.54 17.38 16 5 O -0.53 -23.68 14.77 21.97 0.32 -23.35 16 6 O -0.52 -14.56 13.42 -51.42 -0.69 -15.25 16 7 N -0.72 -34.24 3.39 -306.73 -1.04 -35.28 16 8 C -0.22 -11.51 8.71 84.04 0.73 -10.78 16 9 H 0.09 4.10 6.74 -2.91 -0.02 4.08 16 10 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 11 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 12 Si 0.96 45.60 29.55 68.60 2.03 47.63 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 C -0.02 -0.64 3.50 -19.67 -0.07 -0.70 16 17 C -0.18 -4.75 8.89 22.36 0.20 -4.55 16 18 C 0.09 2.41 11.18 84.68 0.95 3.36 16 19 N -0.51 -16.05 10.36 -195.84 -2.03 -18.08 16 20 C 0.09 2.95 11.18 84.68 0.95 3.90 16 21 C -0.17 -6.37 9.05 22.36 0.20 -6.16 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 1.95 7.27 -2.39 -0.02 1.93 16 25 H 0.11 3.27 7.45 -2.39 -0.02 3.25 16 26 H 0.14 2.81 6.30 -2.39 -0.02 2.80 16 27 H 0.42 8.67 9.10 -74.05 -0.67 8.00 16 28 H 0.37 20.54 5.88 -92.71 -0.54 19.99 16 29 H 0.24 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.16 3.14 6.18 -2.91 -0.02 3.12 16 31 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.17 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.12 4.78 6.82 -2.91 -0.02 4.76 16 Total: -1.00 -72.70 281.15 3.51 -69.19 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.06 Total: 35.13 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.70 Total: -0.38 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -2.79 Total: -112.96 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.37 Total: -38.60 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.70 3.51 -69.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592319318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.317 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds