Wall clock time and date at job start Thu Apr 9 2020 12:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.41782 * 2 1 4 4 N 1.31854 * 120.76719 * 179.97438 * 3 2 1 5 5 C 1.31883 * 121.72185 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.77041 * 359.97438 * 5 4 3 7 7 C 1.38626 * 120.42289 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.78652 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47009 * 80.00224 * 8 7 2 10 10 C 1.36941 * 120.00232 * 269.99852 * 9 8 7 11 11 H 1.08002 * 119.99861 * 137.53327 * 10 9 8 12 12 C 1.38809 * 119.99768 * 317.53502 * 10 9 8 13 13 N 1.31625 * 120.00124 * 344.26952 * 12 10 9 14 14 Si 1.86798 * 119.99970 * 164.26554 * 12 10 9 15 15 H 1.48501 * 109.47185 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47070 * 120.00450 * 14 12 10 17 17 H 1.48500 * 109.47151 * 240.00147 * 14 12 10 18 18 C 1.46506 * 120.00054 * 89.99974 * 9 8 7 19 19 C 1.50698 * 109.47291 * 90.29029 * 18 9 8 20 20 O 1.20825 * 119.99813 * 359.97438 * 19 18 9 21 21 O 1.34223 * 119.99952 * 180.02562 * 19 18 9 22 22 H 1.08999 * 109.47081 * 89.99838 * 1 2 3 23 23 H 1.09002 * 109.47058 * 209.99914 * 1 2 3 24 24 H 1.09001 * 109.47619 * 330.00046 * 1 2 3 25 25 H 1.08006 * 119.61878 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.61812 * 179.72728 * 5 4 3 27 27 H 1.07991 * 120.42533 * 179.97438 * 6 5 4 28 28 H 1.09007 * 109.46938 * 199.99872 * 8 7 2 29 29 H 1.08999 * 109.47298 * 319.99996 * 8 7 2 30 30 H 0.97002 * 120.00053 * 179.97438 * 13 12 10 31 31 H 1.09007 * 109.46974 * 210.29082 * 18 9 8 32 32 H 1.09003 * 109.47117 * 330.28634 * 18 9 8 33 33 H 0.96701 * 116.99801 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0825 0.0005 6 6 3.5948 -1.1470 0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4832 -2.5161 0.0017 9 7 1.0373 -2.8295 -1.3581 10 6 -0.1945 -2.4133 -1.7878 11 1 -0.3098 -2.0015 -2.7796 12 6 -1.2951 -2.5209 -0.9487 13 7 -1.2362 -3.2887 0.1187 14 14 -2.8595 -1.5758 -1.3344 15 1 -2.6695 -0.7916 -2.5811 16 1 -3.9823 -2.5305 -1.5168 17 1 -3.1706 -0.6545 -0.2121 18 6 1.9093 -3.5881 -2.2584 19 6 1.6305 -5.0611 -2.1049 20 8 0.7899 -5.4385 -1.3233 21 8 2.3166 -5.9537 -2.8356 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6674 2.1277 -0.0004 26 1 5.3046 0.1287 -0.0035 27 1 4.1737 -2.0587 0.0001 28 1 2.1547 -3.2994 0.3535 29 1 0.6185 -2.4550 0.6626 30 1 -2.0052 -3.3636 0.7053 31 1 1.7178 -3.2874 -3.2885 32 1 2.9514 -3.3876 -2.0092 33 1 2.1028 -6.8873 -2.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600629684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:28 Heat of formation + Delta-G solvation = -33.016875 kcal Electronic energy + Delta-G solvation = -18785.256508 eV Core-core repulsion = 15811.855774 eV Total energy + Delta-G solvation = -2973.400734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70928 -39.06924 -36.08592 -34.92020 -32.70410 -32.05160 -31.13242 -27.66301 -26.88745 -25.59618 -23.07226 -21.96592 -20.93438 -19.83269 -17.20881 -16.93658 -16.08891 -15.80133 -15.31289 -14.88794 -14.72273 -14.44274 -13.98548 -13.59376 -13.08785 -12.79071 -12.50379 -12.08188 -11.96334 -11.88224 -11.43375 -11.01981 -10.86096 -10.72918 -10.60643 -10.48940 -10.25241 -10.05285 -9.48374 -8.92328 -8.83374 -8.59044 -8.23943 -6.80396 -5.95766 -3.63716 1.71977 1.92938 3.22760 3.31282 3.33850 3.34431 3.95682 4.30224 4.41519 4.95756 5.18651 5.34515 5.40692 5.59649 5.66892 5.71985 6.03147 6.06724 6.21965 6.24941 6.34450 6.39235 6.48221 6.61085 6.76210 7.04612 7.19395 7.32358 7.39129 7.52260 7.66005 8.31060 8.50664 8.87159 8.99902 9.52141 10.11530 11.03538 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.011460 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.204432 B = 2442.694083 C = 3869.389941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C 0.079 3.921 4 N -0.499 5.499 5 C 0.074 3.926 6 C -0.174 4.174 7 C -0.040 4.040 8 C 0.178 3.822 9 N -0.541 5.541 10 C -0.280 4.280 11 H 0.065 0.935 12 C 0.035 3.965 13 N -0.858 5.858 14 Si 0.885 3.115 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.280 1.280 18 C 0.154 3.846 19 C 0.421 3.579 20 O -0.476 6.476 21 O -0.546 6.546 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.123 0.877 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.257 0.743 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 2.216 -1.054 6.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.077 4.077 4 N -0.209 5.209 5 C -0.083 4.083 6 C -0.194 4.194 7 C -0.051 4.051 8 C 0.052 3.948 9 N -0.259 5.259 10 C -0.410 4.410 11 H 0.082 0.918 12 C -0.169 4.169 13 N -0.496 5.496 14 Si 0.713 3.287 15 H -0.196 1.196 16 H -0.215 1.215 17 H -0.206 1.206 18 C 0.024 3.976 19 C 0.258 3.742 20 O -0.359 6.359 21 O -0.358 6.358 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.601 3.276 -0.725 7.405 hybrid contribution -1.434 -1.220 -0.112 1.886 sum 5.167 2.056 -0.837 5.623 Atomic orbital electron populations 1.21023 0.90083 1.02288 1.03597 1.20820 0.97960 0.93109 0.98562 1.22524 0.89881 0.97347 0.97994 1.67539 1.08466 1.31443 1.13410 1.22463 0.99472 0.88168 0.98167 1.22014 0.95119 0.98828 1.03468 1.21510 0.93233 0.98418 0.91893 1.20010 0.98182 0.87603 0.88990 1.43549 1.15901 1.55635 1.10790 1.18969 0.83753 1.36852 1.01389 0.91788 1.25402 0.97163 0.96333 0.97958 1.70031 1.29936 1.34757 1.14903 0.86583 0.83663 0.79839 0.78601 1.19592 1.21495 1.20579 1.20946 0.96075 0.82681 0.97911 1.26544 0.78772 0.91338 0.77544 1.90770 1.30488 1.80278 1.34329 1.84708 1.64734 1.20684 1.65628 0.89824 0.89072 0.93862 0.83865 0.83987 0.85919 0.94359 0.87147 0.93241 0.89637 0.90715 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 7.30 36.00 0.26 -1.92 16 2 C -0.10 -1.94 5.90 -104.48 -0.62 -2.56 16 3 C 0.08 1.39 10.86 -17.55 -0.19 1.20 16 4 N -0.50 -8.84 10.36 -13.25 -0.14 -8.98 16 5 C 0.07 1.19 11.18 -17.55 -0.20 0.99 16 6 C -0.17 -2.91 9.78 -39.44 -0.39 -3.30 16 7 C -0.04 -0.77 5.50 -104.32 -0.57 -1.35 16 8 C 0.18 3.86 5.03 -5.20 -0.03 3.83 16 9 N -0.54 -12.28 1.86 -175.97 -0.33 -12.61 16 10 C -0.28 -6.92 7.51 -15.06 -0.11 -7.03 16 11 H 0.06 1.60 7.88 -52.49 -0.41 1.19 16 12 C 0.04 0.89 2.99 -17.43 -0.05 0.83 16 13 N -0.86 -22.96 11.31 55.49 0.63 -22.33 16 14 Si 0.89 19.88 27.60 -169.99 -4.69 15.19 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.15 3.03 6.26 -5.19 -0.03 3.00 16 19 C 0.42 8.70 8.40 36.00 0.30 9.00 16 20 O -0.48 -12.03 17.19 -18.75 -0.32 -12.35 16 21 O -0.55 -9.04 13.42 -39.24 -0.53 -9.56 16 22 H 0.08 1.71 5.89 -51.93 -0.31 1.40 16 23 H 0.09 1.98 4.45 -51.93 -0.23 1.75 16 24 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 25 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 26 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.04 0.81 7.97 -51.93 -0.41 0.40 16 29 H 0.11 2.71 4.22 -51.93 -0.22 2.49 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.09 1.60 8.04 -51.93 -0.42 1.18 16 32 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.38 4.87 9.10 45.56 0.41 5.28 16 LS Contribution 279.98 15.07 4.22 4.22 Total: -1.00 -30.04 279.98 -5.61 -35.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.83 Total: 8.07 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.62 Total: 2.71 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.16 Total: -43.93 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.85 Total: -21.91 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.69 Total: 15.19 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.04 -5.61 -35.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600629684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.630 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds