Wall clock time and date at job start Thu Apr 9 2020 12:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.41782 * 2 1 4 4 N 1.31854 * 120.76719 * 179.97438 * 3 2 1 5 5 C 1.31883 * 121.72185 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.77041 * 359.97438 * 5 4 3 7 7 C 1.38626 * 120.42289 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.78652 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47009 * 80.00224 * 8 7 2 10 10 C 1.36941 * 120.00232 * 269.99852 * 9 8 7 11 11 H 1.08002 * 119.99861 * 137.53327 * 10 9 8 12 12 C 1.38809 * 119.99768 * 317.53502 * 10 9 8 13 13 N 1.31625 * 120.00124 * 344.26952 * 12 10 9 14 14 Si 1.86798 * 119.99970 * 164.26554 * 12 10 9 15 15 H 1.48501 * 109.47185 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47070 * 120.00450 * 14 12 10 17 17 H 1.48500 * 109.47151 * 240.00147 * 14 12 10 18 18 C 1.46506 * 120.00054 * 89.99974 * 9 8 7 19 19 C 1.50698 * 109.47291 * 90.29029 * 18 9 8 20 20 O 1.20825 * 119.99813 * 359.97438 * 19 18 9 21 21 O 1.34223 * 119.99952 * 180.02562 * 19 18 9 22 22 H 1.08999 * 109.47081 * 89.99838 * 1 2 3 23 23 H 1.09002 * 109.47058 * 209.99914 * 1 2 3 24 24 H 1.09001 * 109.47619 * 330.00046 * 1 2 3 25 25 H 1.08006 * 119.61878 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.61812 * 179.72728 * 5 4 3 27 27 H 1.07991 * 120.42533 * 179.97438 * 6 5 4 28 28 H 1.09007 * 109.46938 * 199.99872 * 8 7 2 29 29 H 1.08999 * 109.47298 * 319.99996 * 8 7 2 30 30 H 0.97002 * 120.00053 * 179.97438 * 13 12 10 31 31 H 1.09007 * 109.46974 * 210.29082 * 18 9 8 32 32 H 1.09003 * 109.47117 * 330.28634 * 18 9 8 33 33 H 0.96701 * 116.99801 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0825 0.0005 6 6 3.5948 -1.1470 0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4832 -2.5161 0.0017 9 7 1.0373 -2.8295 -1.3581 10 6 -0.1945 -2.4133 -1.7878 11 1 -0.3098 -2.0015 -2.7796 12 6 -1.2951 -2.5209 -0.9487 13 7 -1.2362 -3.2887 0.1187 14 14 -2.8595 -1.5758 -1.3344 15 1 -2.6695 -0.7916 -2.5811 16 1 -3.9823 -2.5305 -1.5168 17 1 -3.1706 -0.6545 -0.2121 18 6 1.9093 -3.5881 -2.2584 19 6 1.6305 -5.0611 -2.1049 20 8 0.7899 -5.4385 -1.3233 21 8 2.3166 -5.9537 -2.8356 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6674 2.1277 -0.0004 26 1 5.3046 0.1287 -0.0035 27 1 4.1737 -2.0587 0.0001 28 1 2.1547 -3.2994 0.3535 29 1 0.6185 -2.4550 0.6626 30 1 -2.0052 -3.3636 0.7053 31 1 1.7178 -3.2874 -3.2885 32 1 2.9514 -3.3876 -2.0092 33 1 2.1028 -6.8873 -2.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600629684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:28 Heat of formation + Delta-G solvation = -52.839921 kcal Electronic energy + Delta-G solvation = -18786.116100 eV Core-core repulsion = 15811.855774 eV Total energy + Delta-G solvation = -2974.260326 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11907 -40.66291 -37.70448 -36.53332 -34.19339 -33.74700 -32.66046 -29.24264 -28.49119 -27.19356 -24.74881 -23.37943 -22.40416 -21.42042 -18.90079 -18.58222 -17.61926 -17.24215 -16.80040 -16.55449 -16.43413 -15.80274 -15.55023 -15.31903 -14.63181 -14.10532 -14.06534 -13.67816 -13.54489 -13.44578 -13.02701 -12.67178 -12.48700 -12.39356 -12.32727 -12.14194 -11.95740 -11.74481 -11.21676 -10.53371 -10.25921 -10.21833 -9.61214 -8.60761 -7.83477 -5.54211 0.39236 0.52144 1.42491 1.49079 1.54785 1.68536 2.42160 2.56034 3.02940 3.33593 3.71759 3.73425 4.05602 4.16184 4.28891 4.31937 4.55881 4.71068 4.71935 4.75838 4.88328 4.98924 4.99738 5.07481 5.31112 5.55358 5.57714 5.71720 5.86768 5.95482 6.03054 6.46383 7.09198 7.18110 7.41448 7.72781 8.28214 9.13475 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.011460 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.204432 B = 2442.694083 C = 3869.389941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.121 4.121 3 C 0.080 3.920 4 N -0.510 5.510 5 C 0.080 3.920 6 C -0.170 4.170 7 C -0.055 4.055 8 C 0.186 3.814 9 N -0.555 5.555 10 C -0.277 4.277 11 H 0.058 0.942 12 C 0.004 3.996 13 N -0.890 5.890 14 Si 0.927 3.073 15 H -0.262 1.262 16 H -0.303 1.303 17 H -0.273 1.273 18 C 0.149 3.851 19 C 0.431 3.569 20 O -0.530 6.530 21 O -0.529 6.529 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.166 0.834 26 H 0.180 0.820 27 H 0.146 0.854 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 3.142 -1.845 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.076 4.076 4 N -0.219 5.219 5 C -0.076 4.076 6 C -0.190 4.190 7 C -0.066 4.066 8 C 0.061 3.939 9 N -0.273 5.273 10 C -0.407 4.407 11 H 0.076 0.924 12 C -0.197 4.197 13 N -0.530 5.530 14 Si 0.755 3.245 15 H -0.186 1.186 16 H -0.231 1.231 17 H -0.199 1.199 18 C 0.020 3.980 19 C 0.270 3.730 20 O -0.417 6.417 21 O -0.341 6.341 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.183 0.817 26 H 0.197 0.803 27 H 0.164 0.836 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.600 4.204 -1.549 9.697 hybrid contribution -1.890 -1.566 0.074 2.456 sum 6.710 2.637 -1.475 7.360 Atomic orbital electron populations 1.20856 0.90842 1.02003 1.02509 1.20859 0.97658 0.93831 0.99957 1.22800 0.90085 0.97580 0.97105 1.67642 1.08418 1.32222 1.13648 1.23055 1.01160 0.87274 0.96129 1.22228 0.93983 1.00349 1.02443 1.21337 0.94487 0.97190 0.93546 1.19743 0.97092 0.88916 0.88168 1.43648 1.15766 1.56695 1.11215 1.19036 0.84693 1.36070 1.00919 0.92411 1.25797 0.99032 0.96954 0.97905 1.70165 1.30101 1.36728 1.16006 0.85921 0.80830 0.78833 0.78915 1.18638 1.23079 1.19895 1.21093 0.97067 0.81953 0.97925 1.26515 0.77708 0.92199 0.76542 1.90772 1.32938 1.81210 1.36765 1.84613 1.63388 1.21999 1.64117 0.91285 0.91819 0.91646 0.81712 0.80258 0.83583 0.94719 0.90248 0.94048 0.88420 0.87662 0.73426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.05 7.30 71.24 0.52 -3.53 16 2 C -0.12 -4.46 5.90 -19.78 -0.12 -4.58 16 3 C 0.08 2.64 10.86 84.69 0.92 3.56 16 4 N -0.51 -16.49 10.36 -195.84 -2.03 -18.52 16 5 C 0.08 2.28 11.18 84.67 0.95 3.23 16 6 C -0.17 -5.20 9.78 22.36 0.22 -4.98 16 7 C -0.06 -2.08 5.50 -19.67 -0.11 -2.18 16 8 C 0.19 8.13 5.03 85.63 0.43 8.57 16 9 N -0.55 -25.07 1.86 -710.66 -1.32 -26.40 16 10 C -0.28 -13.79 7.51 84.03 0.63 -13.16 16 11 H 0.06 2.90 7.88 -2.91 -0.02 2.88 16 12 C 0.00 0.20 2.99 84.86 0.25 0.45 16 13 N -0.89 -49.28 11.31 21.65 0.24 -49.04 16 14 Si 0.93 41.46 27.60 68.60 1.89 43.35 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.15 5.63 6.26 85.63 0.54 6.16 16 19 C 0.43 17.28 8.40 71.24 0.60 17.87 16 20 O -0.53 -26.90 17.19 21.97 0.38 -26.52 16 21 O -0.53 -16.17 13.42 -51.35 -0.69 -16.86 16 22 H 0.07 2.82 5.89 -2.39 -0.01 2.80 16 23 H 0.06 2.84 4.45 -2.39 -0.01 2.83 16 24 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 25 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 26 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.15 3.72 8.06 -2.92 -0.02 3.70 16 28 H 0.03 1.48 7.97 -2.38 -0.02 1.46 16 29 H 0.08 4.03 4.22 -2.39 -0.01 4.02 16 30 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.10 3.45 8.04 -2.38 -0.02 3.43 16 32 H 0.11 3.31 8.07 -2.39 -0.02 3.29 16 33 H 0.41 9.26 9.10 -74.06 -0.67 8.58 16 Total: -1.00 -65.26 279.98 3.77 -61.48 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.47 Total: 21.09 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.83 Total: 11.41 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.11 Total: -93.95 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.31 Total: -43.38 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.89 Total: 43.35 kcal Total: -65.26 3.77 -61.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600629684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.644 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds