Wall clock time and date at job start Thu Apr 9 2020 12:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46976 * 184.99419 * 3 2 1 5 5 O 1.20824 * 119.99977 * 0.02562 * 4 3 2 6 6 O 1.34229 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47572 * 239.99933 * 2 1 3 8 8 C 1.36939 * 120.00130 * 59.99859 * 7 2 1 9 9 H 1.07998 * 119.99791 * 0.02562 * 8 7 2 10 10 C 1.38811 * 120.00014 * 180.02562 * 8 7 2 11 11 N 1.31615 * 120.00138 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99839 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46875 * 59.99941 * 12 10 8 14 14 H 1.48497 * 109.46973 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47184 * 300.00025 * 12 10 8 16 16 C 1.50696 * 109.46976 * 119.99385 * 2 1 3 17 17 C 1.38678 * 120.41768 * 89.98442 * 16 2 1 18 18 C 1.38627 * 118.42399 * 180.02562 * 17 16 2 19 19 C 1.38220 * 119.16050 * 0.02562 * 18 17 16 20 20 N 1.31860 * 120.76284 * 359.97438 * 19 18 17 21 21 C 1.31884 * 121.72590 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.47561 * 300.00062 * 1 2 3 23 23 H 1.09004 * 109.46814 * 60.00359 * 1 2 3 24 24 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47102 * 304.99620 * 3 2 1 26 26 H 1.08996 * 109.47079 * 64.99854 * 3 2 1 27 27 H 0.96695 * 117.00652 * 180.02562 * 6 4 3 28 28 H 0.96999 * 119.99866 * 239.99876 * 7 2 1 29 29 H 0.96994 * 120.00119 * 179.97438 * 11 10 8 30 30 H 1.08007 * 120.78855 * 359.97438 * 17 16 2 31 31 H 1.08000 * 120.41839 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.62072 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.61420 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5419 1.4444 -0.1237 5 8 4.1427 0.3992 -0.2041 6 8 4.2121 2.6072 -0.1456 7 7 2.0184 -0.6906 -1.1961 8 6 1.6877 -0.2228 -2.4399 9 1 1.0671 0.6555 -2.5390 10 6 2.1500 -0.8775 -3.5732 11 7 2.9059 -1.9482 -3.4524 12 14 1.6982 -0.2398 -5.2699 13 1 2.2015 1.1485 -5.4270 14 1 2.3120 -1.1096 -6.3052 15 1 0.2215 -0.2516 -5.4261 16 6 2.0323 -0.7103 1.2305 17 6 2.2660 -2.0770 1.2061 18 6 2.7273 -2.6883 2.3616 19 6 2.9369 -1.9208 3.4919 20 7 2.7039 -0.6230 3.4787 21 6 2.2648 -0.0082 2.3977 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6053 1.9816 -0.8418 26 1 1.7515 1.9299 0.9313 27 1 5.1744 2.5578 -0.2267 28 1 2.5761 -1.4792 -1.1071 29 1 3.2287 -2.4058 -4.2443 30 1 2.0920 -2.6517 0.3083 31 1 2.9203 -3.7507 2.3785 32 1 3.2966 -2.3893 4.3961 33 1 2.0849 1.0563 2.4251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604089090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:30 Heat of formation + Delta-G solvation = -58.200479 kcal Electronic energy + Delta-G solvation = -18927.435782 eV Core-core repulsion = 15952.943005 eV Total energy + Delta-G solvation = -2974.492777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70894 -40.56107 -38.10434 -36.62991 -34.55638 -33.15419 -31.66617 -30.56825 -29.12586 -26.27651 -24.59740 -24.08532 -22.78882 -20.46931 -19.31544 -18.76862 -18.08008 -17.39997 -17.10037 -16.59300 -16.43242 -15.93386 -15.09423 -15.07418 -14.89703 -14.41900 -13.92174 -13.84287 -13.43303 -13.22800 -13.03871 -12.84921 -12.71088 -12.51573 -12.28401 -12.20187 -11.85718 -11.55379 -11.22065 -10.96958 -10.60919 -10.35168 -9.80913 -8.94491 -7.87316 -5.14099 0.26336 0.42442 1.47464 1.49406 1.54818 1.57234 2.37969 2.58533 2.94944 3.45027 3.52848 3.79637 3.82139 3.96290 4.13308 4.14379 4.37181 4.48277 4.60940 4.69583 4.82920 4.87081 4.90918 5.05771 5.18026 5.30163 5.46011 5.53387 5.62397 5.83848 5.85030 6.31872 7.05218 7.26721 7.40571 8.16077 8.40221 9.36342 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.008372 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.570082 B = 3343.557458 C = 3778.756224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.242 3.758 3 C -0.122 4.122 4 C 0.476 3.524 5 O -0.525 6.525 6 O -0.523 6.523 7 N -0.715 5.715 8 C -0.224 4.224 9 H 0.085 0.915 10 C -0.078 4.078 11 N -0.968 5.968 12 Si 0.963 3.037 13 H -0.282 1.282 14 H -0.304 1.304 15 H -0.275 1.275 16 C -0.110 4.110 17 C -0.080 4.080 18 C -0.168 4.168 19 C 0.079 3.921 20 N -0.499 5.499 21 C 0.083 3.917 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.132 0.868 27 H 0.416 0.584 28 H 0.374 0.626 29 H 0.245 0.755 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.185 0.815 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 5.570 12.069 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.151 3.849 3 C -0.161 4.161 4 C 0.318 3.682 5 O -0.413 6.413 6 O -0.337 6.337 7 N -0.355 5.355 8 C -0.356 4.356 9 H 0.103 0.897 10 C -0.270 4.270 11 N -0.619 5.619 12 Si 0.793 3.207 13 H -0.208 1.208 14 H -0.231 1.231 15 H -0.201 1.201 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.187 4.187 19 C -0.078 4.078 20 N -0.208 5.208 21 C -0.073 4.073 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.150 0.850 27 H 0.276 0.724 28 H 0.208 0.792 29 H 0.054 0.946 30 H 0.134 0.866 31 H 0.173 0.827 32 H 0.202 0.798 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.767 5.874 12.704 14.267 hybrid contribution 0.859 -0.906 -2.349 2.660 sum -1.909 4.968 10.355 11.642 Atomic orbital electron populations 1.22128 0.93724 1.01772 1.02305 1.18503 0.93523 0.88699 0.84191 1.22146 0.86783 1.00903 1.06305 1.23698 0.92345 0.80632 0.71503 1.90734 1.70872 1.34531 1.45141 1.84477 1.27791 1.35713 1.85703 1.42670 1.59944 1.32826 1.00073 1.19501 1.23702 1.08181 0.84192 0.89728 1.25466 1.01559 0.98815 1.01131 1.69841 1.41243 1.22474 1.28381 0.85360 0.77853 0.77030 0.80425 1.20802 1.23133 1.20083 1.20951 0.98975 0.94861 0.96438 1.21538 0.95661 0.95067 0.98428 1.22380 1.00253 1.02705 0.93372 1.23172 0.96372 0.89365 0.98849 1.67683 1.12071 1.11899 1.29104 1.22806 0.96032 1.00773 0.87723 0.90187 0.92087 0.93713 0.87277 0.85007 0.72432 0.79200 0.94616 0.86615 0.82693 0.79847 0.81309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.42 71.98 0.61 -3.82 16 2 C 0.24 8.80 0.60 2.86 0.00 8.80 16 3 C -0.12 -3.85 4.20 29.85 0.13 -3.72 16 4 C 0.48 17.41 7.57 71.24 0.54 17.95 16 5 O -0.53 -24.03 14.77 21.97 0.32 -23.70 16 6 O -0.52 -15.31 13.42 -51.41 -0.69 -16.00 16 7 N -0.72 -34.29 3.38 -306.75 -1.04 -35.32 16 8 C -0.22 -11.66 8.71 84.03 0.73 -10.92 16 9 H 0.08 4.07 6.74 -2.91 -0.02 4.05 16 10 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 11 N -0.97 -59.70 13.06 21.65 0.28 -59.41 16 12 Si 0.96 45.65 29.55 68.60 2.03 47.68 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 16 C -0.11 -3.82 3.49 -19.78 -0.07 -3.89 16 17 C -0.08 -2.90 9.08 22.47 0.20 -2.70 16 18 C -0.17 -4.87 10.11 22.36 0.23 -4.64 16 19 C 0.08 2.14 11.18 84.68 0.95 3.09 16 20 N -0.50 -15.23 10.36 -195.85 -2.03 -17.26 16 21 C 0.08 2.55 9.99 84.67 0.85 3.40 16 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.06 1.97 7.27 -2.38 -0.02 1.95 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.11 3.42 7.45 -2.39 -0.02 3.40 16 26 H 0.13 2.99 6.24 -2.39 -0.01 2.97 16 27 H 0.42 9.18 9.10 -74.06 -0.67 8.51 16 28 H 0.37 20.43 5.86 -92.71 -0.54 19.88 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 30 H 0.12 4.71 6.82 -2.91 -0.02 4.69 16 31 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.17 4.22 6.07 -2.91 -0.02 4.20 16 Total: -1.00 -71.72 280.98 3.44 -68.28 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.06 Total: 36.12 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.63 Total: -0.38 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -2.78 Total: -112.00 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.37 Total: -39.70 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.72 3.44 -68.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604089090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds