Wall clock time and date at job start Thu Apr 9 2020 12:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35656 * 116.99741 * 2 1 4 4 C 1.39338 * 120.53660 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.43509 * 179.97438 * 4 3 2 6 6 C 1.38769 * 119.44511 * 0.25115 * 5 4 3 7 7 N 1.31368 * 121.06590 * 359.47222 * 6 5 4 8 8 C 1.32861 * 121.69618 * 0.54032 * 7 6 5 9 9 C 1.47837 * 119.78205 * 179.75293 * 8 7 6 10 10 O 1.21555 * 119.99801 * 179.97438 * 9 8 7 11 11 N 1.34771 * 120.00067 * 359.97021 * 9 8 7 12 12 C 1.46503 * 120.00056 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46510 * 35.00157 * 12 11 9 14 14 C 1.52996 * 109.47073 * 275.00569 * 12 11 9 15 15 C 1.50693 * 109.46977 * 155.00423 * 12 11 9 16 16 H 1.08002 * 120.00568 * 5.46112 * 15 12 11 17 17 C 1.37883 * 119.99830 * 185.46623 * 15 12 11 18 18 N 1.31512 * 119.99814 * 9.55509 * 17 15 12 19 19 Si 1.86803 * 119.99909 * 189.56280 * 17 15 12 20 20 H 1.48502 * 109.47308 * 84.98844 * 19 17 15 21 21 H 1.48504 * 109.47031 * 204.99048 * 19 17 15 22 22 H 1.48501 * 109.47053 * 324.98970 * 19 17 15 23 23 H 1.09002 * 109.46501 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46858 * 299.99683 * 1 2 3 25 25 H 1.08992 * 109.47226 * 59.99577 * 1 2 3 26 26 H 1.07993 * 120.78865 * 359.94906 * 4 3 2 27 27 H 1.07999 * 120.27734 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.46398 * 179.72078 * 6 5 4 29 29 H 0.97003 * 119.99943 * 0.02562 * 11 9 8 30 30 H 1.09003 * 109.46743 * 183.67263 * 14 12 11 31 31 H 1.08998 * 109.47498 * 303.67573 * 14 12 11 32 32 H 1.08999 * 109.47217 * 63.67692 * 14 12 11 33 33 H 0.97006 * 119.99677 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3843 0.0005 5 6 1.9695 3.5928 0.0011 6 6 3.3571 3.6012 -0.0043 7 7 4.0418 2.4801 0.0006 8 6 3.4409 1.2951 0.0001 9 6 4.2532 0.0599 0.0001 10 8 3.7075 -1.0263 0.0001 11 7 5.5987 0.1381 0.0001 12 6 6.4036 -1.0860 -0.0005 13 1 5.8997 -1.8518 -0.5902 14 6 6.5787 -1.5818 1.4363 15 6 7.7554 -0.7979 -0.6008 16 1 8.0241 0.2140 -0.8660 17 6 8.6494 -1.8262 -0.8115 18 7 8.2615 -3.0746 -0.6676 19 14 10.4116 -1.4462 -1.3012 20 1 11.2186 -1.1843 -0.0824 21 1 10.9828 -2.6050 -2.0335 22 1 10.4344 -0.2472 -2.1770 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2174 2.3527 0.0001 27 1 1.4193 4.5222 0.0011 28 1 3.8827 4.5448 -0.0084 29 1 6.0341 1.0049 0.0004 30 1 7.2313 -2.4549 1.4423 31 1 7.0231 -0.7918 2.0417 32 1 5.6065 -1.8520 1.8485 33 1 8.8906 -3.7980 -0.8156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:08 Heat of formation + Delta-G solvation = -36.902821 kcal Electronic energy + Delta-G solvation = -17991.925092 eV Core-core repulsion = 15018.355851 eV Total energy + Delta-G solvation = -2973.569241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73425 -38.35910 -37.98872 -34.63307 -32.61423 -31.95083 -30.75423 -28.82281 -27.43493 -25.14261 -24.46564 -22.83532 -21.29578 -19.45305 -18.32197 -17.59607 -17.00925 -15.96688 -15.91026 -15.05387 -14.92852 -14.44898 -14.24948 -13.96669 -13.72394 -13.15739 -12.92006 -12.51275 -12.24590 -11.71497 -11.51294 -11.50961 -10.97058 -10.93504 -10.67997 -10.26490 -10.19888 -9.84336 -9.83232 -9.03502 -8.93040 -8.42721 -8.40245 -7.74476 -6.05761 -4.10183 0.79420 1.22515 3.17874 3.28935 3.32251 3.38125 3.40586 3.96623 4.23527 4.41364 4.48486 4.55837 4.77700 5.00031 5.03560 5.07605 5.17475 5.27967 5.40326 5.64800 5.88599 5.98396 6.34292 6.86216 7.00501 7.17647 7.22695 7.53187 7.66113 7.76694 7.85967 7.99366 8.16497 8.82947 8.89799 9.25816 9.55500 11.02945 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.005455 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.058304 B = 5131.463956 C = 5735.647920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.268 6.268 3 C 0.130 3.870 4 C -0.179 4.179 5 C -0.119 4.119 6 C 0.054 3.946 7 N -0.419 5.419 8 C 0.059 3.941 9 C 0.553 3.447 10 O -0.531 6.531 11 N -0.688 5.688 12 C 0.261 3.739 13 H 0.056 0.944 14 C -0.141 4.141 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.104 0.896 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.398 0.602 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 12.480 1.894 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.079 3.921 4 C -0.206 4.206 5 C -0.139 4.139 6 C -0.106 4.106 7 N -0.131 5.131 8 C -0.081 4.081 9 C 0.336 3.664 10 O -0.408 6.408 11 N -0.336 5.336 12 C 0.159 3.841 13 H 0.074 0.926 14 C -0.200 4.200 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.123 0.877 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.160 0.840 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.672 11.227 1.878 17.791 hybrid contribution -0.082 0.873 -0.240 0.909 sum -13.754 12.100 1.638 18.392 Atomic orbital electron populations 1.23186 0.79091 1.04522 1.00827 1.86493 1.20395 1.24468 1.86400 1.20121 0.92555 0.85628 0.93788 1.21698 1.00801 0.91949 1.06104 1.22123 0.95809 0.98159 0.97807 1.22699 0.91294 0.96523 1.00110 1.67705 1.39869 0.97410 1.08078 1.21268 0.88810 0.93464 1.04547 1.17634 0.83258 0.86594 0.78932 1.90787 1.71848 1.27322 1.50802 1.46375 1.04637 1.12151 1.70418 1.18803 0.89618 0.81982 0.93655 0.92578 1.22008 0.98837 1.01100 0.98009 1.21190 0.98792 0.94454 1.42686 0.91951 1.24887 0.98931 0.94765 0.94983 1.69995 1.34906 0.98491 1.48569 0.86514 0.84474 0.77873 0.78551 1.20446 1.21248 1.19882 0.87749 0.92776 0.92756 0.84001 0.84361 0.82079 0.76842 0.90848 0.95193 0.96115 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 101.05 0.99 1.19 16 2 O -0.27 -4.44 8.56 -40.62 -0.35 -4.79 16 3 C 0.13 2.07 6.71 -38.56 -0.26 1.81 16 4 C -0.18 -2.03 9.13 -39.15 -0.36 -2.39 16 5 C -0.12 -1.18 10.10 -39.36 -0.40 -1.57 16 6 C 0.05 0.65 11.17 -17.55 -0.20 0.45 16 7 N -0.42 -6.86 9.54 -9.71 -0.09 -6.96 16 8 C 0.06 1.10 6.76 -82.88 -0.56 0.54 16 9 C 0.55 12.72 7.77 -12.34 -0.10 12.63 16 10 O -0.53 -13.79 14.80 -16.63 -0.25 -14.04 16 11 N -0.69 -16.17 5.06 -55.88 -0.28 -16.46 16 12 C 0.26 7.05 2.42 -69.09 -0.17 6.88 16 13 H 0.06 1.73 7.52 -51.93 -0.39 1.34 16 14 C -0.14 -3.62 9.36 37.16 0.35 -3.28 16 15 C -0.53 -14.81 8.66 -34.44 -0.30 -15.11 16 16 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 17 C 0.07 1.89 5.17 -17.82 -0.09 1.80 16 18 N -0.88 -25.79 12.16 55.43 0.67 -25.11 16 19 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.43 7.70 -51.93 -0.40 0.03 16 25 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 26 H 0.14 1.13 6.46 -52.49 -0.34 0.79 16 27 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.40 8.60 7.85 -40.82 -0.32 8.28 16 30 H 0.07 2.00 6.83 -51.93 -0.35 1.65 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -33.75 288.71 -5.91 -39.65 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.86 Total: 4.15 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.08 Total: 2.95 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.30 Total: -48.53 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.59 Total: -18.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.75 -5.91 -39.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.752 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds