Wall clock time and date at job start Thu Apr 9 2020 12:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47497 * 2 1 4 4 C 1.50697 * 109.47335 * 239.99360 * 2 1 3 5 5 H 1.07999 * 120.00748 * 240.00038 * 4 2 1 6 6 C 1.37883 * 119.99723 * 60.00677 * 4 2 1 7 7 N 1.31509 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99750 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47276 * 59.99877 * 8 6 4 10 10 H 1.48506 * 109.46771 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47236 * 299.99367 * 8 6 4 12 12 O 1.45205 * 109.47077 * 119.99763 * 2 1 3 13 13 C 1.34756 * 117.00060 * 270.00279 * 12 2 1 14 14 O 1.21527 * 119.99989 * 359.97438 * 13 12 2 15 15 C 1.47280 * 119.99971 * 180.02562 * 13 12 2 16 16 C 1.41248 * 126.45538 * 0.02562 * 15 13 12 17 17 N 1.30270 * 108.02412 * 179.97438 * 16 15 13 18 18 N 1.40515 * 109.03837 * 359.93110 * 17 16 15 19 19 C 1.33977 * 108.18363 * 0.15804 * 18 17 16 20 20 C 1.51390 * 110.34511 * 179.75491 * 19 18 17 21 21 C 1.54568 * 104.14602 * 343.53445 * 20 19 18 22 22 C 1.47261 * 140.79119 * 180.27931 * 18 17 16 23 23 H 1.09008 * 109.46474 * 60.00399 * 1 2 3 24 24 H 1.08990 * 109.47223 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47117 * 300.00538 * 1 2 3 26 26 H 0.97001 * 120.00013 * 180.02562 * 7 6 4 27 27 H 1.08004 * 125.98620 * 359.92768 * 16 15 13 28 28 H 1.09004 * 110.49856 * 224.86287 * 20 19 18 29 29 H 1.09004 * 110.49702 * 102.20312 * 20 19 18 30 30 H 1.09003 * 110.98965 * 266.92900 * 21 20 19 31 31 H 1.09001 * 111.02746 * 143.12652 * 21 20 19 32 32 H 1.08998 * 110.23113 * 316.02138 * 22 18 17 33 33 H 1.08998 * 110.22772 * 77.89462 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0076 10 1 1.8262 -0.4208 -5.2204 11 1 3.8065 -1.1212 -4.0080 12 8 2.0140 -0.6845 1.1856 13 6 2.2178 0.0670 2.2855 14 8 1.9976 1.2617 2.2545 15 6 2.7086 -0.5595 3.5248 16 6 3.0089 -1.9269 3.7120 17 7 3.4138 -2.0862 4.9399 18 7 3.3952 -0.8425 5.5937 19 6 2.9620 0.0804 4.7244 20 6 2.9170 1.4431 5.3823 21 6 2.9854 1.1346 6.8953 22 6 3.6946 -0.2365 6.9020 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7084 1.1607 -3.4845 27 1 2.9179 -2.7043 2.9679 28 1 1.9855 1.9541 5.1386 29 1 3.7739 2.0432 5.0760 30 1 1.9860 1.0594 7.3240 31 1 3.5780 1.8834 7.4208 32 1 3.3019 -0.8602 7.7050 33 1 4.7703 -0.1053 7.0192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342592026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:03 Heat of formation + Delta-G solvation = -3.575520 kcal Electronic energy + Delta-G solvation = -17937.339128 eV Core-core repulsion = 14965.215067 eV Total energy + Delta-G solvation = -2972.124061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76871 -38.96209 -36.42162 -35.44929 -33.14975 -31.09963 -29.53053 -29.46341 -27.37645 -25.24103 -22.92207 -22.35878 -21.10075 -20.08451 -19.08562 -17.29482 -16.66494 -16.36700 -15.52037 -14.87296 -14.54218 -14.36109 -14.31528 -13.79336 -13.76558 -13.34847 -12.81927 -12.22971 -12.05497 -11.85914 -11.77052 -11.45578 -11.15242 -10.99602 -10.78326 -10.77051 -10.31247 -10.21165 -9.52958 -9.41415 -9.33657 -8.82382 -8.52658 -8.40560 -6.11846 -4.18117 1.59469 2.13895 2.34939 3.31151 3.34186 3.36970 3.77003 3.85734 3.92280 4.27167 4.39137 4.42310 4.57369 4.93223 5.15365 5.21060 5.26315 5.30220 5.46670 5.61958 5.64959 5.69428 6.19762 6.53430 6.68336 6.75210 6.98779 7.01568 7.28427 7.67088 7.68656 7.82010 8.03442 8.23081 8.76540 9.01338 9.47102 10.95667 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.043582 B = 0.004904 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.310810 B = 5707.728909 C = 6071.465575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.046 0.954 4 C -0.519 4.519 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.352 6.352 13 C 0.531 3.469 14 O -0.531 6.531 15 C -0.254 4.254 16 C 0.108 3.892 17 N -0.286 5.286 18 N -0.388 5.388 19 C 0.133 3.867 20 C -0.070 4.070 21 C -0.133 4.133 22 C 0.128 3.872 23 H 0.098 0.902 24 H 0.036 0.964 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.205 0.795 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -0.074 17.781 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.269 6.269 13 C 0.376 3.624 14 O -0.423 6.423 15 C -0.266 4.266 16 C -0.080 4.080 17 N -0.104 5.104 18 N -0.167 5.167 19 C 0.000 4.000 20 C -0.109 4.109 21 C -0.172 4.172 22 C 0.007 3.993 23 H 0.117 0.883 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.222 0.778 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.288 -0.606 18.640 19.136 hybrid contribution -0.058 0.160 -1.542 1.551 sum 4.230 -0.446 17.098 17.619 Atomic orbital electron populations 1.22155 0.97669 1.00061 1.01308 1.20595 0.91299 0.93939 0.77704 0.93583 1.21006 1.32363 1.13421 0.88928 0.91341 1.24876 0.94980 0.95107 0.99000 1.69893 1.36137 1.22630 1.24156 0.86343 0.79199 0.79551 0.81077 1.19957 1.21102 1.20021 1.86524 1.76180 1.43144 1.21003 1.19883 0.74261 0.84705 0.83568 1.90741 1.50408 1.16211 1.84966 1.18867 1.20727 0.93833 0.93216 1.24306 0.94260 0.95993 0.93401 1.77220 1.26193 0.99402 1.07607 1.50071 1.49701 1.05694 1.11278 1.22422 0.94400 0.92580 0.90602 1.21009 1.05957 0.91629 0.92320 1.22868 1.02472 0.95170 0.96653 1.22417 1.01714 0.93713 0.81441 0.88339 0.94476 0.96533 0.92432 0.77829 0.87579 0.87895 0.89241 0.87756 0.88752 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.22 6.00 2.56 -27.89 -0.07 5.93 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.84 8.90 -34.44 -0.31 -15.14 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.35 -8.77 9.71 -40.64 -0.39 -9.17 16 13 C 0.53 12.07 7.93 34.41 0.27 12.34 16 14 O -0.53 -13.09 16.16 -19.29 -0.31 -13.40 16 15 C -0.25 -4.71 6.13 -105.06 -0.64 -5.35 16 16 C 0.11 1.78 11.86 -17.07 -0.20 1.58 16 17 N -0.29 -4.57 12.64 30.82 0.39 -4.18 16 18 N -0.39 -5.33 4.80 -55.12 -0.26 -5.59 16 19 C 0.13 2.02 7.31 -81.29 -0.59 1.43 16 20 C -0.07 -0.75 6.86 -26.72 -0.18 -0.93 16 21 C -0.13 -0.84 7.18 -25.19 -0.18 -1.02 16 22 C 0.13 1.03 7.78 -2.91 -0.02 1.01 16 23 H 0.10 2.72 6.07 -51.92 -0.32 2.40 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.21 2.96 8.06 -52.48 -0.42 2.54 16 28 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 289.17 15.07 4.36 4.36 Total: -1.00 -34.03 289.17 -6.33 -40.36 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.04 Total: -1.53 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.68 Total: -2.18 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.75 Total: -34.76 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.71 Total: -22.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.03 -6.33 -40.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342592026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.789 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds