Wall clock time and date at job start Thu Apr 9 2020 12:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35046 * 124.88279 * 2 1 4 4 C 1.35344 * 107.24358 * 179.69973 * 3 2 1 5 5 C 1.41548 * 105.49987 * 0.41957 * 4 3 2 6 6 C 1.47582 * 126.52268 * 179.84197 * 5 4 3 7 7 O 1.21490 * 120.00335 * 359.71269 * 6 5 4 8 8 O 1.34736 * 120.00251 * 179.70567 * 6 5 4 9 9 C 1.45199 * 117.00394 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47066 * 330.00371 * 9 8 6 11 11 C 1.50697 * 109.46941 * 210.00607 * 9 8 6 12 12 H 1.07991 * 120.00449 * 359.72333 * 11 9 8 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.52999 * 109.47039 * 90.00552 * 9 8 6 20 20 C 1.52997 * 117.49744 * 8.74251 * 19 9 8 21 21 C 1.53008 * 117.49583 * 300.08808 * 19 9 8 22 22 N 1.28472 * 124.87846 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47274 * 270.00128 * 1 2 3 24 24 H 1.09001 * 109.46836 * 30.00134 * 1 2 3 25 25 H 1.08997 * 109.47059 * 149.99695 * 1 2 3 26 26 H 1.08001 * 126.37682 * 0.02562 * 3 2 1 27 27 H 1.07996 * 127.25240 * 180.25550 * 4 3 2 28 28 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 29 29 H 1.08992 * 115.54898 * 154.42103 * 19 9 8 30 30 H 1.09001 * 117.49902 * 0.02562 * 20 19 9 31 31 H 1.09002 * 117.49609 * 145.02249 * 20 19 9 32 32 H 1.08997 * 117.49605 * 214.98083 * 21 19 9 33 33 H 1.08993 * 117.49807 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5271 0.6977 0.0068 5 6 3.4743 -0.7168 0.0008 6 6 4.6267 -1.6387 0.0014 7 8 5.7584 -1.1967 0.0022 8 8 4.4239 -2.9707 0.0012 9 6 5.6036 -3.8173 0.0012 10 1 6.4177 -3.3059 -0.5124 11 6 5.2944 -5.1096 -0.7096 12 1 4.3086 -5.2798 -1.1163 13 6 6.2685 -6.0774 -0.8351 14 7 7.4690 -5.8703 -0.3394 15 14 5.8831 -7.6825 -1.7094 16 1 5.4769 -7.3987 -3.1093 17 1 7.0897 -8.5482 -1.7094 18 1 4.7762 -8.3771 -1.0039 19 6 6.0177 -4.1149 1.4437 20 6 5.0610 -3.6827 2.5567 21 6 6.3723 -2.9242 2.3368 22 7 2.1996 -1.0539 0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.8903 2.1306 0.0004 27 1 4.4106 1.3188 0.0125 28 1 8.1543 -6.5510 -0.4281 29 1 6.5769 -5.0387 1.5911 30 1 4.1365 -3.1867 2.2613 31 1 4.9911 -4.3222 3.4367 32 1 7.1645 -3.0650 3.0721 33 1 6.3110 -1.9290 1.8966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346708273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:22 Heat of formation + Delta-G solvation = 26.581625 kcal Electronic energy + Delta-G solvation = -18221.256236 eV Core-core repulsion = 15250.439887 eV Total energy + Delta-G solvation = -2970.816349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.51364 -39.40716 -36.35713 -34.59059 -33.42345 -32.73362 -30.69399 -28.24385 -27.23261 -23.82620 -22.72580 -21.37403 -21.34884 -20.06691 -18.84917 -17.58567 -16.66564 -16.40731 -16.25492 -15.53348 -15.18312 -14.44929 -13.91215 -13.80701 -13.32976 -13.03928 -12.79541 -12.59790 -12.31321 -11.53787 -11.30133 -11.06385 -10.89328 -10.72775 -10.48489 -10.25508 -10.01175 -9.82679 -9.40103 -9.18344 -9.05115 -8.99557 -8.45281 -8.37141 -6.12429 -4.18777 1.76661 2.20168 2.47151 3.31493 3.34458 3.36986 3.69507 3.76385 4.35434 4.43354 4.76157 4.88575 5.01079 5.10165 5.19360 5.20346 5.59012 5.77404 5.89191 5.94436 6.17038 6.22730 6.46454 6.55735 6.75503 6.78855 6.96136 7.11128 7.26539 7.63091 7.64671 7.87047 8.00486 8.18470 8.69904 8.95397 9.44972 10.94961 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.006160 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.423793 B = 4544.474820 C = 5033.139243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.290 5.290 3 C -0.027 4.027 4 C -0.179 4.179 5 C 0.007 3.993 6 C 0.541 3.459 7 O -0.507 6.507 8 O -0.335 6.335 9 C 0.247 3.753 10 H 0.054 0.946 11 C -0.516 4.516 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.910 3.090 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.210 4.210 22 N -0.234 5.234 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.164 0.836 28 H 0.266 0.734 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 12.191 1.911 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.079 5.079 3 C -0.169 4.169 4 C -0.206 4.206 5 C -0.152 4.152 6 C 0.383 3.617 7 O -0.395 6.395 8 O -0.250 6.250 9 C 0.194 3.806 10 H 0.071 0.929 11 C -0.554 4.554 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.134 4.134 20 C -0.232 4.232 21 C -0.247 4.247 22 N -0.070 5.070 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.199 0.801 27 H 0.181 0.819 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.401 11.239 1.930 16.847 hybrid contribution 0.465 -0.068 -0.265 0.539 sum -11.936 11.171 1.665 16.433 Atomic orbital electron populations 1.22145 0.73327 1.05382 1.04373 1.45548 1.07892 1.03286 1.51224 1.22809 0.90894 0.93736 1.09435 1.21787 0.97471 0.93189 1.08166 1.21220 0.90058 0.92885 1.11025 1.19548 0.86030 0.83008 0.73096 1.90774 1.23342 1.78719 1.46714 1.86646 1.42161 1.15017 1.81146 1.20202 0.80986 0.87543 0.91872 0.92850 1.20921 0.99061 0.99278 1.36130 0.91163 1.24893 0.94648 0.98727 0.95561 1.69979 1.02799 1.34930 1.44657 0.86362 0.77729 0.82165 0.80047 1.19991 1.21070 1.19947 1.23013 1.00047 0.98552 0.91826 1.22805 0.94176 1.04815 1.01354 1.23154 0.98024 0.98668 1.04873 1.73813 1.03139 1.12979 1.17103 0.89774 0.88762 0.88411 0.80107 0.81882 0.92395 0.85240 0.89727 0.90475 0.90497 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.31 59.85 0.68 1.28 16 2 N -0.29 -3.65 3.70 -68.13 -0.25 -3.90 16 3 C -0.03 -0.30 11.45 -17.17 -0.20 -0.50 16 4 C -0.18 -2.66 10.81 -39.35 -0.43 -3.09 16 5 C 0.01 0.13 7.17 -82.79 -0.59 -0.47 16 6 C 0.54 12.56 6.92 34.54 0.24 12.80 16 7 O -0.51 -12.48 14.02 -19.26 -0.27 -12.75 16 8 O -0.34 -8.57 8.39 -40.59 -0.34 -8.92 16 9 C 0.25 6.82 2.41 -27.88 -0.07 6.75 16 10 H 0.05 1.62 7.16 -51.93 -0.37 1.25 16 11 C -0.52 -14.84 8.90 -34.44 -0.31 -15.14 16 12 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 13 C 0.06 1.79 5.19 -17.82 -0.09 1.70 16 14 N -0.89 -25.43 11.60 55.43 0.64 -24.79 16 15 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.12 -2.99 5.27 -90.62 -0.48 -3.47 16 20 C -0.19 -4.38 9.80 -26.70 -0.26 -4.64 16 21 C -0.21 -4.83 9.85 -26.69 -0.26 -5.09 16 22 N -0.23 -4.13 11.99 33.41 0.40 -3.73 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.13 3.59 6.47 -51.93 -0.34 3.25 16 30 H 0.08 1.93 6.91 -51.93 -0.36 1.57 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 2.22 5.36 -51.93 -0.28 1.94 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -33.77 288.46 -6.11 -39.88 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.85 Total: 3.32 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.77 Total: -9.87 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.79 Total: -32.42 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.61 Total: -21.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.77 -6.11 -39.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.461 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds