Wall clock time and date at job start Thu Apr 9 2020 12:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35046 * 124.88279 * 2 1 4 4 C 1.35344 * 107.24358 * 179.69973 * 3 2 1 5 5 C 1.41548 * 105.49987 * 0.41957 * 4 3 2 6 6 C 1.47582 * 126.52268 * 179.84197 * 5 4 3 7 7 O 1.21490 * 120.00335 * 359.71269 * 6 5 4 8 8 O 1.34736 * 120.00251 * 179.70567 * 6 5 4 9 9 C 1.45199 * 117.00394 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47066 * 330.00371 * 9 8 6 11 11 C 1.50697 * 109.46941 * 210.00607 * 9 8 6 12 12 H 1.07991 * 120.00449 * 359.72333 * 11 9 8 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.52999 * 109.47039 * 90.00552 * 9 8 6 20 20 C 1.52997 * 117.49744 * 8.74251 * 19 9 8 21 21 C 1.53008 * 117.49583 * 300.08808 * 19 9 8 22 22 N 1.28472 * 124.87846 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47274 * 270.00128 * 1 2 3 24 24 H 1.09001 * 109.46836 * 30.00134 * 1 2 3 25 25 H 1.08997 * 109.47059 * 149.99695 * 1 2 3 26 26 H 1.08001 * 126.37682 * 0.02562 * 3 2 1 27 27 H 1.07996 * 127.25240 * 180.25550 * 4 3 2 28 28 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 29 29 H 1.08992 * 115.54898 * 154.42103 * 19 9 8 30 30 H 1.09001 * 117.49902 * 0.02562 * 20 19 9 31 31 H 1.09002 * 117.49609 * 145.02249 * 20 19 9 32 32 H 1.08997 * 117.49605 * 214.98083 * 21 19 9 33 33 H 1.08993 * 117.49807 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5271 0.6977 0.0068 5 6 3.4743 -0.7168 0.0008 6 6 4.6267 -1.6387 0.0014 7 8 5.7584 -1.1967 0.0022 8 8 4.4239 -2.9707 0.0012 9 6 5.6036 -3.8173 0.0012 10 1 6.4177 -3.3059 -0.5124 11 6 5.2944 -5.1096 -0.7096 12 1 4.3086 -5.2798 -1.1163 13 6 6.2685 -6.0774 -0.8351 14 7 7.4690 -5.8703 -0.3394 15 14 5.8831 -7.6825 -1.7094 16 1 5.4769 -7.3987 -3.1093 17 1 7.0897 -8.5482 -1.7094 18 1 4.7762 -8.3771 -1.0039 19 6 6.0177 -4.1149 1.4437 20 6 5.0610 -3.6827 2.5567 21 6 6.3723 -2.9242 2.3368 22 7 2.1996 -1.0539 0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.8903 2.1306 0.0004 27 1 4.4106 1.3188 0.0125 28 1 8.1543 -6.5510 -0.4281 29 1 6.5769 -5.0387 1.5911 30 1 4.1365 -3.1867 2.2613 31 1 4.9911 -4.3222 3.4367 32 1 7.1645 -3.0650 3.0721 33 1 6.3110 -1.9290 1.8966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346708273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:22 Heat of formation + Delta-G solvation = 4.587689 kcal Electronic energy + Delta-G solvation = -18222.209965 eV Core-core repulsion = 15250.439887 eV Total energy + Delta-G solvation = -2971.770077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.62980 -41.28438 -38.26616 -36.51752 -34.88995 -34.40620 -31.80066 -30.12116 -28.45843 -25.63649 -24.39148 -23.22042 -22.41490 -21.72180 -20.68858 -19.07138 -18.48485 -18.01278 -17.66570 -17.03731 -16.98687 -16.28938 -15.63557 -14.90216 -14.72321 -14.38554 -14.16711 -13.65910 -13.53812 -13.32575 -13.27177 -13.03340 -12.78978 -12.37697 -12.23273 -12.01561 -11.91862 -11.67966 -11.36437 -11.07764 -10.50001 -10.45610 -10.29647 -10.08877 -8.26868 -6.43611 0.33462 1.16714 1.40159 1.45164 1.49530 1.55600 2.10768 2.15961 2.43428 3.00025 3.13107 3.41021 3.96583 4.04136 4.07819 4.24569 4.26275 4.43787 4.49177 4.66615 4.70025 4.72745 4.74563 4.87700 4.95003 5.21559 5.27339 5.27606 5.48682 5.54615 5.82332 5.91606 6.06521 6.57681 6.76870 7.03410 7.26367 8.80787 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.006160 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.423793 B = 4544.474820 C = 5033.139243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.276 5.276 3 C 0.010 3.990 4 C -0.198 4.198 5 C -0.039 4.039 6 C 0.535 3.465 7 O -0.535 6.535 8 O -0.347 6.347 9 C 0.252 3.748 10 H 0.009 0.991 11 C -0.548 4.548 12 H 0.063 0.937 13 C 0.021 3.979 14 N -0.911 5.911 15 Si 0.981 3.019 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.265 1.265 19 C -0.144 4.144 20 C -0.169 4.169 21 C -0.197 4.197 22 N -0.268 5.268 23 H 0.104 0.896 24 H 0.140 0.860 25 H 0.093 0.907 26 H 0.243 0.757 27 H 0.170 0.830 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.536 13.375 2.345 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.066 5.066 3 C -0.132 4.132 4 C -0.226 4.226 5 C -0.194 4.194 6 C 0.379 3.621 7 O -0.425 6.425 8 O -0.263 6.263 9 C 0.199 3.801 10 H 0.027 0.973 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.803 3.197 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.163 4.163 20 C -0.206 4.206 21 C -0.234 4.234 22 N -0.107 5.107 23 H 0.123 0.877 24 H 0.158 0.842 25 H 0.112 0.888 26 H 0.260 0.740 27 H 0.188 0.812 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.842 12.436 2.371 19.508 hybrid contribution 1.089 -0.285 -0.407 1.197 sum -13.753 12.151 1.964 18.457 Atomic orbital electron populations 1.22717 0.69816 1.07507 1.06390 1.46149 1.09739 1.02600 1.48154 1.23613 0.88970 0.95510 1.05117 1.22065 0.99894 0.91197 1.09421 1.20937 0.89587 0.93751 1.15169 1.20273 0.87405 0.82381 0.71997 1.90726 1.24865 1.78762 1.48129 1.86628 1.41155 1.16614 1.81862 1.19841 0.80466 0.87099 0.92702 0.97333 1.21172 0.99226 1.00482 1.37635 0.91915 1.25797 0.94174 1.02109 0.95837 1.70100 1.03615 1.36133 1.45015 0.85277 0.78065 0.77489 0.78821 1.19435 1.19862 1.18964 1.22727 1.02715 0.98993 0.91847 1.22829 0.93404 1.03913 1.00463 1.23148 0.99164 0.97074 1.04031 1.73707 1.02956 1.15596 1.18477 0.87750 0.84224 0.88827 0.74035 0.81220 0.91989 0.87307 0.90276 0.87577 0.88164 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.31 127.77 1.44 2.14 16 2 N -0.28 -6.12 3.70 -369.47 -1.37 -7.48 16 3 C 0.01 0.19 11.45 83.53 0.96 1.15 16 4 C -0.20 -5.68 10.81 22.42 0.24 -5.44 16 5 C -0.04 -1.54 7.17 42.42 0.30 -1.23 16 6 C 0.54 26.27 6.92 70.29 0.49 26.76 16 7 O -0.54 -28.08 14.02 19.87 0.28 -27.80 16 8 O -0.35 -18.86 8.39 -56.46 -0.47 -19.33 16 9 C 0.25 14.80 2.41 29.85 0.07 14.87 16 10 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 11 C -0.55 -32.95 8.90 25.60 0.23 -32.73 16 12 H 0.06 3.75 7.81 -2.92 -0.02 3.72 16 13 C 0.02 1.21 5.19 84.66 0.44 1.65 16 14 N -0.91 -53.92 11.60 21.45 0.25 -53.68 16 15 Si 0.98 44.48 29.54 68.60 2.03 46.50 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 19 C -0.14 -7.73 5.27 -10.79 -0.06 -7.78 16 20 C -0.17 -7.64 9.80 30.62 0.30 -7.34 16 21 C -0.20 -9.21 9.85 30.62 0.30 -8.91 16 22 N -0.27 -9.38 11.99 -48.22 -0.58 -9.96 16 23 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.14 0.11 8.13 -2.39 -0.02 0.09 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.24 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.11 6.27 6.47 -2.39 -0.02 6.26 16 30 H 0.08 3.66 6.91 -2.39 -0.02 3.65 16 31 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.08 4.06 5.36 -2.39 -0.01 4.05 16 Total: -1.00 -79.69 288.46 5.98 -73.71 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.12 Total: 14.90 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.72 Total: -16.87 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.70 Total: -71.12 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.20 Total: -47.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -79.69 5.98 -73.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.300 kcal (2) G-P(sol) polarization free energy of solvation -79.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds