Wall clock time and date at job start Thu Apr 9 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34329 * 126.44469 * 2 1 4 4 N 1.34478 * 107.67122 * 179.76755 * 3 2 1 5 5 C 1.30254 * 108.69778 * 0.41925 * 4 3 2 6 6 C 1.50701 * 125.61708 * 179.83676 * 5 4 3 7 7 N 1.46895 * 109.47184 * 84.80918 * 6 5 4 8 8 C 1.46899 * 111.00216 * 199.51610 * 7 6 5 9 9 C 1.50700 * 109.47102 * 170.00049 * 8 7 6 10 10 H 1.07998 * 120.00518 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99819 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99916 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00010 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47002 * 90.00283 * 13 11 9 15 15 H 1.48502 * 109.46874 * 210.00433 * 13 11 9 16 16 H 1.48504 * 109.47125 * 330.00099 * 13 11 9 17 17 C 1.46903 * 110.99848 * 75.56186 * 7 6 5 18 18 C 1.52997 * 109.47211 * 58.50855 * 17 7 6 19 19 C 1.53004 * 117.49393 * 245.79787 * 18 17 7 20 20 C 1.53002 * 117.50033 * 177.13971 * 18 17 7 21 21 O 1.33966 * 108.76221 * 359.57974 * 5 4 3 22 22 H 1.09002 * 109.47288 * 269.97347 * 1 2 3 23 23 H 1.09004 * 109.47293 * 29.97455 * 1 2 3 24 24 H 1.08993 * 109.47253 * 149.97972 * 1 2 3 25 25 H 1.08008 * 126.16593 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47227 * 324.80530 * 6 5 4 27 27 H 1.09007 * 109.47089 * 204.80760 * 6 5 4 28 28 H 1.09002 * 109.47230 * 290.00208 * 8 7 6 29 29 H 1.09000 * 109.46913 * 50.00119 * 8 7 6 30 30 H 0.97003 * 119.99869 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.46996 * 298.50211 * 17 7 6 32 32 H 1.09007 * 109.46908 * 178.50545 * 17 7 6 33 33 H 1.08994 * 115.55339 * 31.46304 * 18 17 7 34 34 H 1.08996 * 117.50072 * 0.02562 * 19 18 17 35 35 H 1.09005 * 117.49572 * 145.01980 * 19 18 17 36 36 H 1.09003 * 117.49713 * 214.97433 * 20 18 17 37 37 H 1.09001 * 117.49458 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0007 6 6 4.8004 -1.5339 -0.0013 7 7 5.2674 -1.7241 1.3784 8 6 6.6693 -2.1622 1.4041 9 6 7.1859 -2.1104 2.8188 10 1 6.5379 -1.7843 3.6188 11 6 8.4864 -2.4785 3.0917 12 7 8.9371 -2.4338 4.3264 13 14 9.6076 -3.0420 1.7079 14 1 10.3209 -1.8698 1.1404 15 1 10.5968 -4.0148 2.2374 16 1 8.7962 -3.6896 0.6460 17 6 4.4066 -2.6711 2.0997 18 6 4.3956 -4.0126 1.3642 19 6 3.0739 -4.4653 0.7403 20 6 3.6047 -5.1591 1.9974 21 8 2.3074 -1.0840 -0.0005 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5141 25 1 1.9821 2.1113 0.0004 26 1 5.5871 -1.0612 -0.5893 27 1 4.5524 -2.5016 -0.4376 28 1 6.7377 -3.1835 1.0294 29 1 7.2674 -1.5034 0.7745 30 1 9.8519 -2.6931 4.5184 31 1 3.3922 -2.2752 2.1488 32 1 4.7901 -2.8138 3.1100 33 1 5.3145 -4.2666 0.8359 34 1 2.2124 -3.8073 0.8536 35 1 3.1235 -5.0176 -0.1981 36 1 4.0033 -6.1675 1.8854 37 1 3.0926 -4.9577 2.9383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:12 Heat of formation + Delta-G solvation = 56.033349 kcal Electronic energy + Delta-G solvation = -18569.816780 eV Core-core repulsion = 15736.110649 eV Total energy + Delta-G solvation = -2833.706132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.05492 -38.30667 -35.41774 -34.40837 -32.80642 -32.16568 -29.17991 -27.65648 -25.82426 -23.88254 -22.11810 -21.94554 -21.60445 -20.78289 -19.22466 -16.96790 -16.64164 -16.38480 -15.75329 -14.83375 -14.68863 -14.18153 -14.09153 -13.85319 -13.35064 -13.12327 -13.00137 -12.44830 -12.35203 -12.13439 -11.69081 -11.39413 -11.22133 -11.17493 -11.00986 -10.61871 -10.54874 -10.19079 -10.12096 -9.89478 -9.54079 -9.25848 -8.57601 -8.45878 -7.50606 -6.05247 -4.02717 1.64392 2.84206 2.97751 3.28534 3.35460 3.36241 4.10473 4.33594 4.41115 4.77310 4.85486 5.04289 5.08652 5.21837 5.24269 5.27444 5.28115 5.35772 5.50949 5.72083 5.74149 5.78613 5.86510 6.05851 6.10760 6.21237 6.22363 6.30314 6.36807 6.54051 6.72829 6.81567 6.93142 7.50756 7.77125 7.89371 8.07538 8.61581 9.03075 9.55297 11.07835 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.006403 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.332120 B = 4372.077969 C = 5017.071410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.068 4.068 3 C -0.043 4.043 4 N -0.473 5.473 5 C 0.219 3.781 6 C 0.140 3.860 7 N -0.514 5.514 8 C 0.162 3.838 9 C -0.507 4.507 10 H 0.081 0.919 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.873 3.127 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.092 3.908 18 C -0.178 4.178 19 C -0.186 4.186 20 C -0.174 4.174 21 O -0.202 6.202 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.178 0.822 26 H 0.107 0.893 27 H 0.064 0.936 28 H -0.001 1.001 29 H 0.028 0.972 30 H 0.264 0.736 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 -0.267 -9.956 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C -0.182 4.182 4 N -0.201 5.201 5 C 0.011 3.989 6 C 0.011 3.989 7 N -0.237 5.237 8 C 0.036 3.964 9 C -0.545 4.545 10 H 0.099 0.901 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.700 3.300 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.036 4.036 18 C -0.198 4.198 19 C -0.223 4.223 20 C -0.211 4.211 21 O -0.089 6.089 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.195 0.805 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.685 0.489 -9.596 17.549 hybrid contribution 0.127 -1.370 -1.000 1.700 sum -14.558 -0.881 -10.595 18.027 Atomic orbital electron populations 1.20179 0.84531 1.03823 1.03459 1.23339 0.94846 0.85073 1.08852 1.23067 0.88230 1.00056 1.06807 1.70473 1.22361 1.09497 1.17777 1.26417 0.83677 0.90255 0.98506 1.20488 0.88732 0.95593 0.94075 1.62063 1.04747 1.47050 1.09839 1.20277 0.83057 0.93742 0.99301 1.20943 0.97513 1.44179 0.91863 0.90096 1.24860 0.97703 0.95262 0.95294 1.69886 1.16687 1.48644 1.18549 0.86901 0.81106 0.79065 0.82905 1.20064 1.21228 1.19260 1.21793 0.96128 0.86616 0.99080 1.23127 0.95259 0.97591 1.03778 1.23023 0.98119 1.04322 0.96864 1.22820 1.04368 0.97048 0.96888 1.84400 1.18138 1.36424 1.69923 0.90138 0.89402 0.90734 0.80524 0.87457 0.91829 0.98382 0.95386 0.92636 0.92605 0.88445 0.87502 0.89117 0.89660 0.89296 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.43 36.00 0.38 -0.15 16 2 C -0.07 -0.91 7.39 -35.69 -0.26 -1.17 16 3 C -0.04 -0.63 11.80 -17.77 -0.21 -0.84 16 4 N -0.47 -8.66 11.29 -11.10 -0.13 -8.78 16 5 C 0.22 3.86 7.23 -12.95 -0.09 3.76 16 6 C 0.14 2.47 5.49 -4.98 -0.03 2.44 16 7 N -0.51 -10.69 4.62 -237.51 -1.10 -11.79 16 8 C 0.16 3.78 3.63 -4.98 -0.02 3.76 16 9 C -0.51 -14.12 8.99 -34.44 -0.31 -14.43 16 10 H 0.08 2.48 7.38 -52.49 -0.39 2.09 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 13 Si 0.87 21.08 27.47 -169.99 -4.67 16.42 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 17 C 0.09 1.76 5.34 -3.82 -0.02 1.74 16 18 C -0.18 -2.97 3.98 -90.62 -0.36 -3.34 16 19 C -0.19 -2.59 9.89 -26.69 -0.26 -2.85 16 20 C -0.17 -2.51 10.25 -26.69 -0.27 -2.79 16 21 O -0.20 -3.21 10.67 5.37 0.06 -3.16 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.18 1.99 8.06 -52.48 -0.42 1.56 16 26 H 0.11 1.82 7.74 -51.93 -0.40 1.41 16 27 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 28 H 0.00 -0.03 5.18 -51.93 -0.27 -0.30 16 29 H 0.03 0.66 7.26 -51.93 -0.38 0.28 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 32 H 0.10 2.11 6.73 -51.93 -0.35 1.76 16 33 H 0.11 1.93 6.29 -51.93 -0.33 1.60 16 34 H 0.09 1.25 8.04 -51.93 -0.42 0.84 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -31.76 306.12 -7.37 -39.14 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.36 Total: 2.01 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.56 Total: -11.93 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.45 Total: -47.10 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.06 Total: -3.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.76 -7.37 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.171 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds