Wall clock time and date at job start Thu Apr 9 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34329 * 126.44469 * 2 1 4 4 N 1.34478 * 107.67122 * 179.76755 * 3 2 1 5 5 C 1.30254 * 108.69778 * 0.41925 * 4 3 2 6 6 C 1.50701 * 125.61708 * 179.83676 * 5 4 3 7 7 N 1.46895 * 109.47184 * 84.80918 * 6 5 4 8 8 C 1.46899 * 111.00216 * 199.51610 * 7 6 5 9 9 C 1.50700 * 109.47102 * 170.00049 * 8 7 6 10 10 H 1.07998 * 120.00518 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99819 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99916 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00010 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47002 * 90.00283 * 13 11 9 15 15 H 1.48502 * 109.46874 * 210.00433 * 13 11 9 16 16 H 1.48504 * 109.47125 * 330.00099 * 13 11 9 17 17 C 1.46903 * 110.99848 * 75.56186 * 7 6 5 18 18 C 1.52997 * 109.47211 * 58.50855 * 17 7 6 19 19 C 1.53004 * 117.49393 * 245.79787 * 18 17 7 20 20 C 1.53002 * 117.50033 * 177.13971 * 18 17 7 21 21 O 1.33966 * 108.76221 * 359.57974 * 5 4 3 22 22 H 1.09002 * 109.47288 * 269.97347 * 1 2 3 23 23 H 1.09004 * 109.47293 * 29.97455 * 1 2 3 24 24 H 1.08993 * 109.47253 * 149.97972 * 1 2 3 25 25 H 1.08008 * 126.16593 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47227 * 324.80530 * 6 5 4 27 27 H 1.09007 * 109.47089 * 204.80760 * 6 5 4 28 28 H 1.09002 * 109.47230 * 290.00208 * 8 7 6 29 29 H 1.09000 * 109.46913 * 50.00119 * 8 7 6 30 30 H 0.97003 * 119.99869 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.46996 * 298.50211 * 17 7 6 32 32 H 1.09007 * 109.46908 * 178.50545 * 17 7 6 33 33 H 1.08994 * 115.55339 * 31.46304 * 18 17 7 34 34 H 1.08996 * 117.50072 * 0.02562 * 19 18 17 35 35 H 1.09005 * 117.49572 * 145.01980 * 19 18 17 36 36 H 1.09003 * 117.49713 * 214.97433 * 20 18 17 37 37 H 1.09001 * 117.49458 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0007 6 6 4.8004 -1.5339 -0.0013 7 7 5.2674 -1.7241 1.3784 8 6 6.6693 -2.1622 1.4041 9 6 7.1859 -2.1104 2.8188 10 1 6.5379 -1.7843 3.6188 11 6 8.4864 -2.4785 3.0917 12 7 8.9371 -2.4338 4.3264 13 14 9.6076 -3.0420 1.7079 14 1 10.3209 -1.8698 1.1404 15 1 10.5968 -4.0148 2.2374 16 1 8.7962 -3.6896 0.6460 17 6 4.4066 -2.6711 2.0997 18 6 4.3956 -4.0126 1.3642 19 6 3.0739 -4.4653 0.7403 20 6 3.6047 -5.1591 1.9974 21 8 2.3074 -1.0840 -0.0005 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5141 25 1 1.9821 2.1113 0.0004 26 1 5.5871 -1.0612 -0.5893 27 1 4.5524 -2.5016 -0.4376 28 1 6.7377 -3.1835 1.0294 29 1 7.2674 -1.5034 0.7745 30 1 9.8519 -2.6931 4.5184 31 1 3.3922 -2.2752 2.1488 32 1 4.7901 -2.8138 3.1100 33 1 5.3145 -4.2666 0.8359 34 1 2.2124 -3.8073 0.8536 35 1 3.1235 -5.0176 -0.1981 36 1 4.0033 -6.1675 1.8854 37 1 3.0926 -4.9577 2.9383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:12 Heat of formation + Delta-G solvation = 32.549918 kcal Electronic energy + Delta-G solvation = -18570.835098 eV Core-core repulsion = 15736.110649 eV Total energy + Delta-G solvation = -2834.724450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.23698 -39.75309 -36.81051 -35.64350 -34.69495 -33.40938 -30.70578 -29.26983 -27.11420 -25.41595 -23.32463 -23.22696 -23.08777 -22.02774 -20.74176 -18.92617 -17.86169 -17.72909 -17.15621 -16.53193 -16.03169 -15.73496 -15.32085 -15.24310 -14.58428 -14.43089 -14.08891 -13.85515 -13.76281 -13.17629 -13.13860 -12.99921 -12.68626 -12.45610 -12.39622 -12.30588 -12.21345 -11.90694 -11.59113 -11.41811 -11.18003 -10.81786 -10.70495 -9.58355 -9.09278 -8.25310 -6.28520 0.48627 1.37834 1.39278 1.48964 1.68147 1.79999 2.36847 2.88320 3.08222 3.13706 3.32888 3.78634 3.91741 4.02685 4.08907 4.10888 4.26371 4.33437 4.40302 4.55725 4.62652 4.71128 4.73070 4.77903 4.87341 4.97771 5.03433 5.07659 5.12226 5.23835 5.26225 5.33435 5.39601 5.52927 5.92099 6.22800 6.57377 6.76246 6.86767 7.33832 8.91552 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.006403 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.332120 B = 4372.077969 C = 5017.071410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.053 4.053 3 C -0.068 4.068 4 N -0.505 5.505 5 C 0.196 3.804 6 C 0.147 3.853 7 N -0.536 5.536 8 C 0.174 3.826 9 C -0.512 4.512 10 H 0.033 0.967 11 C 0.009 3.991 12 N -0.950 5.950 13 Si 0.946 3.054 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.243 1.243 17 C 0.104 3.896 18 C -0.201 4.201 19 C -0.157 4.157 20 C -0.170 4.170 21 O -0.207 6.207 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.205 0.795 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.009 0.991 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.119 -1.013 -12.499 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C -0.206 4.206 4 N -0.235 5.235 5 C -0.011 4.011 6 C 0.018 3.982 7 N -0.260 5.260 8 C 0.047 3.953 9 C -0.550 4.550 10 H 0.051 0.949 11 C -0.188 4.188 12 N -0.591 5.591 13 Si 0.769 3.231 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.166 1.166 17 C -0.024 4.024 18 C -0.221 4.221 19 C -0.194 4.194 20 C -0.208 4.208 21 O -0.094 6.094 22 H 0.112 0.888 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.222 0.778 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.456 -0.260 -12.154 20.459 hybrid contribution 0.486 -1.038 -0.118 1.152 sum -15.969 -1.298 -12.272 20.182 Atomic orbital electron populations 1.20475 0.80622 1.05872 1.04867 1.24338 0.96733 0.83971 1.05610 1.23593 0.87227 1.01907 1.07900 1.70410 1.24718 1.10160 1.18174 1.26178 0.84260 0.90139 1.00562 1.20415 0.89179 0.96669 0.91944 1.61876 1.03762 1.47886 1.12442 1.19999 0.84773 0.94343 0.96144 1.21158 0.97201 1.43450 0.93187 0.94901 1.25811 0.99497 0.95366 0.98090 1.70054 1.17355 1.50387 1.21257 0.85743 0.78777 0.78867 0.79747 1.19248 1.20957 1.16638 1.21534 0.95473 0.88126 0.97295 1.22888 0.96545 0.97030 1.05656 1.23046 0.95871 1.03141 0.97344 1.22936 1.03455 0.96864 0.97521 1.84390 1.17797 1.37372 1.69847 0.88821 0.86569 0.89477 0.77822 0.87206 0.89922 0.97317 0.95025 0.92500 0.92198 0.92470 0.88579 0.88786 0.87512 0.87931 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.43 71.23 0.74 -0.04 16 2 C -0.05 -1.30 7.39 24.79 0.18 -1.12 16 3 C -0.07 -1.89 11.80 83.39 0.98 -0.91 16 4 N -0.50 -18.27 11.29 -303.83 -3.43 -21.70 16 5 C 0.20 6.76 7.23 88.34 0.64 7.40 16 6 C 0.15 5.06 5.49 85.56 0.47 5.53 16 7 N -0.54 -22.68 4.62 -905.36 -4.18 -26.86 16 8 C 0.17 8.18 3.63 85.56 0.31 8.49 16 9 C -0.51 -29.67 8.99 25.60 0.23 -29.44 16 10 H 0.03 2.16 7.38 -2.91 -0.02 2.14 16 11 C 0.01 0.55 5.47 84.66 0.46 1.01 16 12 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 13 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 17 C 0.10 4.07 5.34 86.30 0.46 4.53 16 18 C -0.20 -6.55 3.98 -10.79 -0.04 -6.60 16 19 C -0.16 -3.93 9.89 30.62 0.30 -3.62 16 20 C -0.17 -4.63 10.25 30.62 0.31 -4.32 16 21 O -0.21 -6.25 10.67 -3.71 -0.04 -6.29 16 22 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.20 4.15 8.06 -2.91 -0.02 4.13 16 26 H 0.11 3.65 7.74 -2.39 -0.02 3.64 16 27 H 0.08 2.50 6.33 -2.38 -0.02 2.48 16 28 H 0.01 0.42 5.18 -2.39 -0.01 0.40 16 29 H 0.03 1.47 7.26 -2.39 -0.02 1.45 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.06 2.24 7.31 -2.39 -0.02 2.22 16 32 H 0.06 2.65 6.73 -2.38 -0.02 2.63 16 33 H 0.10 3.35 6.29 -2.39 -0.02 3.33 16 34 H 0.09 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -71.93 306.12 0.59 -71.35 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.00 Total: 16.70 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.06 Total: -19.08 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -7.32 Total: -108.09 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.04 Total: -6.29 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -71.93 0.59 -71.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.897 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds