Wall clock time and date at job start Thu Apr 9 2020 12:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 115.54951 * 2 1 4 4 C 1.53007 * 117.50324 * 145.66592 * 2 1 3 5 5 C 1.50708 * 117.49323 * 359.97438 * 4 2 1 6 6 O 1.21294 * 119.99951 * 350.54179 * 5 4 2 7 7 N 1.34771 * 119.99817 * 170.54372 * 5 4 2 8 8 C 1.37100 * 120.00352 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99486 * 337.06400 * 8 7 5 10 10 C 1.38945 * 120.00436 * 157.06217 * 8 7 5 11 11 N 1.31420 * 119.99725 * 48.50928 * 10 8 7 12 12 Si 1.86795 * 120.00260 * 228.51039 * 10 8 7 13 13 H 1.48501 * 109.47328 * 89.99819 * 12 10 8 14 14 H 1.48498 * 109.47133 * 209.99943 * 12 10 8 15 15 H 1.48503 * 109.47239 * 329.99954 * 12 10 8 16 16 C 1.46504 * 120.00006 * 359.97438 * 7 5 4 17 17 C 1.47200 * 109.47304 * 82.73836 * 16 7 5 18 18 N 5.32052 * 125.09978 * 119.68093 * 2 1 3 19 19 C 1.52995 * 60.03159 * 107.48101 * 4 2 1 20 20 C 1.53006 * 117.49718 * 107.50408 * 19 4 2 21 21 C 1.53000 * 117.50112 * 252.52656 * 19 4 2 22 22 H 1.08999 * 109.47155 * 277.40625 * 1 2 3 23 23 H 1.08992 * 109.47557 * 37.41257 * 1 2 3 24 24 H 1.09010 * 109.46835 * 157.40948 * 1 2 3 25 25 H 1.09004 * 109.47477 * 154.27628 * 3 2 1 26 26 H 1.09004 * 109.46923 * 274.27739 * 3 2 1 27 27 H 1.09000 * 109.47022 * 34.27710 * 3 2 1 28 28 H 1.08994 * 117.50031 * 214.98737 * 4 2 1 29 29 H 0.97004 * 119.99657 * 180.02562 * 11 10 8 30 30 H 1.09008 * 109.47091 * 202.74076 * 16 7 5 31 31 H 1.09003 * 109.47239 * 322.74053 * 16 7 5 32 32 H 1.08996 * 109.46600 * 111.39295 * 20 19 4 33 33 H 1.08996 * 109.46795 * 231.39090 * 20 19 4 34 34 H 1.08994 * 109.46835 * 351.39498 * 20 19 4 35 35 H 1.09000 * 109.46971 * 8.60662 * 21 19 4 36 36 H 1.08998 * 109.47322 * 128.61126 * 21 19 4 37 37 H 1.09008 * 109.47209 * 248.60782 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2365 -1.1207 0.7655 5 6 1.3720 -2.1397 1.4622 6 8 0.1755 -1.9615 1.5501 7 7 1.9285 -3.2490 1.9877 8 6 1.1421 -4.1764 2.6211 9 1 0.1854 -3.8849 3.0288 10 6 1.5758 -5.4912 2.7385 11 7 2.7903 -5.7463 3.1708 12 14 0.4326 -6.8961 2.2820 13 1 0.6062 -7.2287 0.8451 14 1 0.7568 -8.0866 3.1083 15 1 -0.9743 -6.4900 2.5295 16 6 3.3737 -3.4645 1.8811 17 6 4.0603 -2.7257 2.9532 18 7 4.5892 -2.1555 3.7819 19 6 2.2367 -1.1221 -0.7645 20 6 3.5495 -0.7780 -1.4711 21 6 1.3589 -2.1577 -1.4702 22 1 -0.3633 0.1325 1.0191 23 1 -0.3634 0.8162 -0.6243 24 1 -0.3633 -0.9489 -0.3948 25 1 3.1818 1.3090 0.4460 26 1 2.2773 1.7412 -1.0249 27 1 1.5804 2.0744 0.5788 28 1 3.1715 -0.8746 1.2687 29 1 3.0932 -6.6642 3.2524 30 1 3.5904 -4.5286 1.9766 31 1 3.7237 -3.1079 0.9124 32 1 3.9369 -1.6661 -1.9704 33 1 3.3710 0.0046 -2.2084 34 1 4.2758 -0.4276 -0.7377 35 1 0.7296 -2.6611 -0.7362 36 1 0.7297 -1.6589 -2.2073 37 1 1.9922 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081310487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:15 Heat of formation + Delta-G solvation = 9.149571 kcal Electronic energy + Delta-G solvation = -19248.349220 eV Core-core repulsion = 16412.610055 eV Total energy + Delta-G solvation = -2835.739165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46650 -39.01195 -37.52183 -36.28591 -33.92149 -31.95562 -29.55794 -29.40004 -28.92982 -27.03256 -26.50815 -23.08261 -20.06280 -19.73952 -18.64521 -18.24682 -17.54073 -16.59081 -16.26037 -15.92296 -15.46591 -14.91738 -14.75494 -14.72656 -14.33518 -13.86966 -13.74911 -13.58370 -13.36614 -13.19667 -13.17850 -13.09335 -12.95194 -12.72987 -12.56489 -12.51210 -12.33728 -12.18849 -12.06339 -11.56169 -10.61672 -10.52775 -10.45659 -10.04399 -9.90729 -8.66941 -5.80729 1.32701 1.49536 1.57183 1.65219 1.89342 1.99715 2.29706 2.63712 2.82148 3.13760 3.45314 3.74883 3.83877 3.87130 4.20446 4.28673 4.39233 4.53704 4.66960 4.79816 4.86926 4.89322 5.03564 5.03625 5.08920 5.12001 5.15929 5.18550 5.23868 5.29445 5.44120 5.52318 5.55248 5.74186 6.11290 6.45920 6.67910 7.15440 7.39106 8.05850 8.40324 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.008460 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.748106 B = 3308.906005 C = 3822.469037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.107 4.107 4 C -0.189 4.189 5 C 0.484 3.516 6 O -0.602 6.602 7 N -0.448 5.448 8 C -0.387 4.387 9 H 0.072 0.928 10 C 0.051 3.949 11 N -0.834 5.834 12 Si 0.945 3.055 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.283 1.283 16 C 0.177 3.823 17 C 0.234 3.766 18 N -0.498 5.498 19 C -0.081 4.081 20 C -0.110 4.110 21 C -0.120 4.120 22 H 0.035 0.965 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.287 0.713 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 5.461 -12.587 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.164 4.164 4 C -0.210 4.210 5 C 0.275 3.725 6 O -0.487 6.487 7 N -0.168 5.168 8 C -0.512 4.512 9 H 0.089 0.911 10 C -0.158 4.158 11 N -0.468 5.468 12 Si 0.769 3.231 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.209 1.209 16 C 0.051 3.949 17 C -0.084 4.084 18 N -0.178 5.178 19 C -0.082 4.082 20 C -0.167 4.167 21 C -0.177 4.177 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.174 0.826 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.684 6.215 -11.230 13.353 hybrid contribution -0.846 -1.118 0.573 1.515 sum 2.838 5.097 -10.658 12.150 Atomic orbital electron populations 1.21202 0.92297 1.01221 1.00575 1.21816 0.95046 0.91471 1.01336 1.21327 0.99586 0.92374 1.03111 1.22602 1.00922 1.01279 0.96222 1.19807 0.87897 0.82465 0.82344 1.90501 1.17201 1.77397 1.63639 1.43782 1.04444 1.19460 1.49095 1.19060 1.01872 0.88520 1.41746 0.91061 1.25678 0.97352 0.99604 0.93137 1.70131 1.21304 1.23155 1.32239 0.85739 0.79856 0.77857 0.79693 1.18627 1.20196 1.20854 1.20369 0.79931 1.03247 0.91381 1.30603 0.91956 0.91450 0.94363 1.80988 1.11800 1.13227 1.11789 1.21858 0.99128 0.98443 0.88731 1.21407 0.92382 1.02780 1.00130 1.21421 0.99056 0.97491 0.99763 0.94561 0.91611 0.93116 0.92288 0.89582 0.92342 0.87452 0.90232 0.82578 0.85538 0.90651 0.90038 0.92079 0.94722 0.90849 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 7.86 71.98 0.57 -2.66 16 2 C -0.10 -2.90 2.70 -52.16 -0.14 -3.04 16 3 C -0.11 -2.45 8.86 71.98 0.64 -1.82 16 4 C -0.19 -6.70 3.86 -11.54 -0.04 -6.74 16 5 C 0.48 22.37 5.60 87.66 0.49 22.87 16 6 O -0.60 -31.89 12.52 -3.07 -0.04 -31.93 16 7 N -0.45 -21.41 2.61 -645.39 -1.69 -23.10 16 8 C -0.39 -20.73 9.11 84.04 0.77 -19.97 16 9 H 0.07 4.28 7.62 -2.91 -0.02 4.26 16 10 C 0.05 2.47 4.94 84.92 0.42 2.89 16 11 N -0.83 -39.48 10.87 21.66 0.24 -39.25 16 12 Si 0.95 38.98 29.69 68.60 2.04 41.01 16 13 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 14 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 C 0.18 7.12 5.12 84.57 0.43 7.55 16 17 C 0.23 10.10 14.79 89.44 1.32 11.42 16 18 N -0.50 -22.81 18.54 20.01 0.37 -22.44 16 19 C -0.08 -2.22 2.70 -52.16 -0.14 -2.36 16 20 C -0.11 -2.12 8.88 71.98 0.64 -1.48 16 21 C -0.12 -3.45 8.20 71.98 0.59 -2.86 16 22 H 0.04 1.42 7.23 -2.39 -0.02 1.40 16 23 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 24 H 0.05 1.88 5.22 -2.38 -0.01 1.86 16 25 H 0.06 1.31 7.78 -2.38 -0.02 1.29 16 26 H 0.09 1.52 8.03 -2.38 -0.02 1.50 16 27 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.11 3.72 6.90 -2.39 -0.02 3.70 16 29 H 0.29 12.39 8.31 -92.71 -0.77 11.62 16 30 H 0.16 6.59 4.83 -2.38 -0.01 6.58 16 31 H 0.13 4.02 7.18 -2.39 -0.02 4.00 16 32 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 33 H 0.08 1.26 8.03 -2.39 -0.02 1.25 16 34 H 0.06 1.15 7.78 -2.39 -0.02 1.13 16 35 H 0.03 1.28 5.54 -2.39 -0.01 1.27 16 36 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 37 H 0.08 1.86 7.92 -2.38 -0.02 1.84 16 Total: -1.00 -63.06 302.71 7.53 -55.53 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.07 Total: 16.36 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.54 Total: 3.81 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.08 Total: -84.78 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.04 Total: -31.93 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.04 Total: 41.01 kcal Total: -63.06 7.53 -55.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081310487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.680 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds