Wall clock time and date at job start Thu Apr 9 2020 12:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00178 * 2 1 4 4 C 1.38798 * 120.02988 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.05557 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.11242 * 359.74773 * 5 4 3 7 7 C 1.50704 * 119.97654 * 180.25527 * 6 5 4 8 8 C 1.53004 * 109.46778 * 265.25632 * 7 6 5 9 9 C 1.52996 * 109.46855 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47287 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99748 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99709 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00325 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47350 * 89.99985 * 14 12 10 16 16 H 1.48498 * 109.47444 * 210.00053 * 14 12 10 17 17 H 1.48500 * 109.47479 * 330.00301 * 14 12 10 18 18 C 1.38750 * 120.05389 * 0.50871 * 6 5 4 19 19 O 1.35891 * 120.03171 * 179.77047 * 18 6 5 20 20 C 1.42903 * 117.00396 * 179.72455 * 19 18 6 21 21 C 1.38616 * 120.02656 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.47233 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47186 * 300.00432 * 1 2 3 24 24 H 1.08998 * 109.46835 * 60.00391 * 1 2 3 25 25 H 1.08000 * 119.96937 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.94392 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.46947 * 25.25318 * 7 6 5 28 28 H 1.08994 * 109.47340 * 145.25602 * 7 6 5 29 29 H 1.08999 * 109.47126 * 299.99577 * 8 7 6 30 30 H 1.08994 * 109.47209 * 59.99890 * 8 7 6 31 31 H 1.09011 * 109.47170 * 299.99634 * 9 8 7 32 32 H 1.08997 * 109.47556 * 59.99385 * 9 8 7 33 33 H 0.97001 * 119.99814 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.46938 * 59.99709 * 20 19 18 36 36 H 1.09004 * 109.46926 * 299.99830 * 20 19 18 37 37 H 1.08003 * 120.05589 * 0.03821 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0063 7 6 3.9776 5.0267 0.0127 8 6 4.3196 5.4320 -1.4225 9 6 5.0109 6.7968 -1.4160 10 6 5.3472 7.1964 -2.8296 11 1 5.0935 6.5421 -3.6505 12 6 5.9786 8.3973 -3.0749 13 7 6.2725 8.7457 -4.3085 14 14 6.4166 9.5293 -1.6551 15 1 7.7773 9.1992 -1.1603 16 1 6.3874 10.9396 -2.1192 17 1 5.4335 9.3493 -0.5568 18 6 4.0568 2.5209 0.0004 19 8 5.4136 2.5958 0.0009 20 6 6.1317 1.3603 0.0007 21 6 3.4302 1.2839 -0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2121 2.3188 0.0014 26 1 1.3278 4.5114 0.0019 27 1 3.3107 5.7692 0.4509 28 1 4.8930 4.9680 0.6015 29 1 4.9865 4.6895 -1.8606 30 1 3.4042 5.4907 -2.0113 31 1 4.3443 7.5397 -0.9777 32 1 5.9262 6.7377 -0.8272 33 1 6.7170 9.5904 -4.4811 34 1 7.2028 1.5625 0.0007 35 1 5.8702 0.7882 -0.8895 36 1 5.8697 0.7877 0.8905 37 1 4.0197 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098124496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:26:29 Heat of formation + Delta-G solvation = -88.369803 kcal Electronic energy + Delta-G solvation = -17852.083662 eV Core-core repulsion = 14979.822988 eV Total energy + Delta-G solvation = -2872.260673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51784 -39.90768 -37.86904 -36.17262 -34.35248 -31.99987 -31.22582 -29.05860 -28.08800 -27.64677 -24.93555 -23.15276 -22.36662 -21.61520 -19.61265 -18.85808 -17.85956 -17.16697 -16.87011 -16.58942 -16.37603 -16.11782 -15.69466 -15.53059 -14.87400 -14.63052 -14.19422 -14.09114 -13.45855 -13.35765 -13.12626 -13.04519 -12.71224 -12.44642 -12.40640 -12.28372 -11.87580 -11.75843 -11.54511 -11.37783 -11.30905 -11.19183 -10.74329 -9.56883 -8.86058 -8.27727 -6.31808 0.36891 0.45021 1.37521 1.39528 1.52464 2.22536 2.38672 2.50945 2.73397 3.07480 3.81219 3.95726 4.07681 4.21981 4.24723 4.37885 4.38498 4.42317 4.47422 4.54298 4.59572 4.64387 4.73060 4.77494 4.85793 4.94556 5.14058 5.14972 5.24976 5.37024 5.49493 5.57931 5.65269 5.71715 5.74826 6.31417 6.32998 6.51037 6.75850 7.32582 8.89520 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.004484 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.547278 B = 6242.762612 C = 6637.106069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.149 3.851 4 C -0.241 4.241 5 C -0.045 4.045 6 C -0.162 4.162 7 C -0.060 4.060 8 C -0.083 4.083 9 C -0.011 4.011 10 C -0.534 4.534 11 H 0.026 0.974 12 C 0.001 3.999 13 N -0.954 5.954 14 Si 0.955 3.045 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.243 1.243 18 C 0.155 3.845 19 O -0.328 6.328 20 C 0.018 3.982 21 C -0.252 4.252 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.155 0.845 26 H 0.149 0.851 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 -17.735 13.996 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.103 3.897 4 C -0.259 4.259 5 C -0.063 4.063 6 C -0.163 4.163 7 C -0.097 4.097 8 C -0.120 4.120 9 C -0.048 4.048 10 C -0.572 4.572 11 H 0.044 0.956 12 C -0.195 4.195 13 N -0.595 5.595 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.167 1.167 18 C 0.109 3.891 19 O -0.241 6.241 20 C -0.076 4.076 21 C -0.271 4.271 22 H 0.139 0.861 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.167 0.833 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.031 -17.653 13.897 24.604 hybrid contribution 0.319 0.422 -0.255 0.588 sum -9.712 -17.231 13.641 24.027 Atomic orbital electron populations 1.23371 0.76200 1.05636 1.02433 1.86015 1.23680 1.26505 1.88443 1.18781 0.91564 0.84911 0.94456 1.21361 1.01242 0.91356 1.11972 1.20948 0.92381 0.98522 0.94465 1.19443 0.93797 0.93692 1.09353 1.20346 1.00023 0.92660 0.96654 1.21236 0.98848 0.96286 0.95677 1.19547 0.95931 0.94832 0.94489 1.21539 1.38116 1.04065 0.93435 0.95608 1.26086 0.95060 0.99708 0.98679 1.70088 1.43579 1.23991 1.21889 0.85587 0.79772 0.77238 0.79632 1.19212 1.20786 1.16659 1.18707 0.82868 0.93013 0.94547 1.86151 1.15316 1.34556 1.88119 1.23339 0.97430 0.84657 1.02221 1.20484 0.93352 0.97343 1.15947 0.86117 0.91409 0.91858 0.82772 0.83335 0.90197 0.91687 0.94672 0.93723 0.95733 0.96530 0.92508 0.86710 0.92120 0.91136 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.21 10.49 -92.33 -0.97 -8.18 16 3 C 0.15 3.72 6.68 22.49 0.15 3.87 16 4 C -0.24 -5.52 9.04 22.38 0.20 -5.32 16 5 C -0.05 -1.18 9.67 22.24 0.22 -0.97 16 6 C -0.16 -5.08 5.15 -19.75 -0.10 -5.18 16 7 C -0.06 -2.05 5.06 29.85 0.15 -1.90 16 8 C -0.08 -3.56 5.14 30.59 0.16 -3.40 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.53 -32.56 9.66 25.60 0.25 -32.31 16 11 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 12 C 0.00 0.05 5.47 84.65 0.46 0.51 16 13 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 14 Si 0.95 45.68 27.47 68.60 1.88 47.57 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 18 C 0.15 4.75 6.66 22.49 0.15 4.90 16 19 O -0.33 -10.13 9.63 -92.32 -0.89 -11.02 16 20 C 0.02 0.37 9.81 113.37 1.11 1.48 16 21 C -0.25 -6.77 8.97 22.46 0.20 -6.57 16 22 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 24 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 25 H 0.15 2.54 6.29 -2.91 -0.02 2.53 16 26 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16 28 H 0.06 2.27 7.69 -2.39 -0.02 2.25 16 29 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.02 1.16 7.20 -2.38 -0.02 1.15 16 32 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 33 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 36 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 37 H 0.15 3.35 6.30 -2.91 -0.02 3.33 16 Total: -1.00 -74.08 308.12 5.49 -68.59 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.99 Total: 8.68 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 4.18 Total: -43.97 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.30 Total: -61.67 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.86 Total: -19.20 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -74.08 5.49 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098124496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.783 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds