Wall clock time and date at job start Thu Apr 9 2020 12:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46737 * 2 1 4 4 H 1.08999 * 109.48067 * 305.00076 * 3 2 1 5 5 C 1.50708 * 109.46961 * 184.99952 * 3 2 1 6 6 H 1.07996 * 120.00018 * 240.00118 * 5 3 2 7 7 C 1.37872 * 119.99747 * 60.00382 * 5 3 2 8 8 N 1.31515 * 119.99998 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 120.00386 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.46907 * 270.00216 * 9 7 5 11 11 H 1.48503 * 109.46692 * 30.00028 * 9 7 5 12 12 H 1.48497 * 109.47063 * 150.00064 * 9 7 5 13 13 N 1.46506 * 109.47086 * 65.00430 * 3 2 1 14 14 C 1.34778 * 119.99838 * 274.99493 * 13 3 2 15 15 O 1.21585 * 119.99831 * 0.02562 * 14 13 3 16 16 N 1.34770 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.39583 * 119.99906 * 174.71288 * 16 14 13 18 18 C 1.39652 * 121.08715 * 327.69758 * 17 16 14 19 19 C 1.38299 * 117.88801 * 179.78661 * 18 17 16 20 20 N 1.32058 * 119.93286 * 0.49608 * 19 18 17 21 21 N 1.28309 * 122.37416 * 359.74011 * 20 19 18 22 22 C 1.31811 * 122.25732 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47102 * 59.99895 * 1 2 3 24 24 H 1.09006 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47441 * 299.99756 * 1 2 3 26 26 H 1.08999 * 109.47047 * 240.00853 * 2 1 3 27 27 H 1.08990 * 109.47062 * 120.00146 * 2 1 3 28 28 H 0.97001 * 120.00518 * 179.97438 * 8 7 5 29 29 H 0.96996 * 120.00062 * 94.99574 * 13 3 2 30 30 H 0.96998 * 120.00613 * 354.71222 * 16 14 13 31 31 H 1.07993 * 121.05238 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.03632 * 180.23466 * 19 18 17 33 33 H 1.08001 * 120.13401 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 5.4539 0.8806 -1.3363 9 14 3.0963 0.1090 -2.5701 10 1 2.8756 -1.3270 -2.2634 11 1 1.7876 0.8074 -2.6386 12 1 3.7936 0.2350 -3.8752 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6644 1.3671 15 8 -0.3416 2.6318 0.4322 16 7 0.0783 3.2664 2.5189 17 6 -1.1365 3.9487 2.6026 18 6 -1.6745 4.6022 1.4919 19 6 -2.8843 5.2540 1.6481 20 7 -3.4868 5.2523 2.8232 21 7 -2.9935 4.6572 3.8473 22 6 -1.8489 4.0053 3.7986 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.8770 0.4822 -2.1129 29 1 2.2718 2.1231 1.9978 30 1 0.6657 3.2256 3.2897 31 1 -1.1640 4.5955 0.5403 32 1 -3.3337 5.7674 0.8109 33 1 -1.4652 3.5168 4.6821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662500853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:25:23 Heat of formation + Delta-G solvation = 35.168478 kcal Electronic energy + Delta-G solvation = -18134.614226 eV Core-core repulsion = 15196.462982 eV Total energy + Delta-G solvation = -2938.151244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25964 -39.79719 -36.34721 -34.89181 -32.80842 -32.51245 -31.90978 -30.55394 -27.60675 -24.77597 -24.26093 -22.75272 -21.38492 -20.10185 -18.94910 -17.95468 -17.20425 -16.60665 -16.34978 -15.74228 -15.07733 -14.74505 -14.64495 -14.20155 -13.63858 -13.36098 -13.27556 -12.69899 -12.16167 -11.94494 -11.38528 -11.18135 -11.03684 -10.84579 -10.75519 -10.30676 -10.09561 -10.03385 -9.70603 -9.49507 -9.35505 -8.89917 -8.75268 -8.25774 -6.31759 -4.35705 0.79278 0.90877 2.64149 3.15521 3.27888 3.28494 3.31743 3.66857 4.11412 4.21393 4.32739 4.44412 4.67934 5.01379 5.01778 5.26144 5.47294 5.82619 5.85025 5.91778 6.04192 6.09334 6.45019 6.45841 6.58636 6.66330 6.76916 6.90801 7.10374 7.25195 7.35615 8.08305 8.37384 8.64100 8.70408 8.78502 9.27756 10.80045 Molecular weight = 250.12amu Principal moments of inertia in cm(-1) A = 0.043256 B = 0.005235 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.154615 B = 5347.209813 C = 5492.146186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.052 0.948 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.260 1.260 12 H -0.293 1.293 13 N -0.704 5.704 14 C 0.694 3.306 15 O -0.573 6.573 16 N -0.684 5.684 17 C 0.185 3.815 18 C -0.133 4.133 19 C 0.061 3.939 20 N -0.273 5.273 21 N -0.228 5.228 22 C 0.009 3.991 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.269 0.731 29 H 0.395 0.605 30 H 0.411 0.589 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 4.165 7.278 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C 0.155 3.845 4 H 0.069 0.931 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.355 5.355 14 C 0.394 3.606 15 O -0.450 6.450 16 N -0.332 5.332 17 C 0.075 3.925 18 C -0.165 4.165 19 C -0.101 4.101 20 N -0.117 5.117 21 N -0.069 5.069 22 C -0.160 4.160 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.248 0.752 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.532 4.498 7.128 14.284 hybrid contribution 1.607 -1.122 -0.921 2.165 sum -9.925 3.377 6.208 12.184 Atomic orbital electron populations 1.21857 0.96857 0.99103 1.02174 1.22323 0.94408 0.99918 1.01305 1.19145 0.95657 0.88276 0.81380 0.93057 1.20994 0.88357 1.40303 1.08061 0.90120 1.24809 0.94879 0.95024 0.97624 1.69853 1.08699 1.44132 1.29867 0.86911 0.80923 0.80020 0.80953 1.20150 1.18428 1.22028 1.45505 1.12880 1.58102 1.19006 1.16081 0.83676 0.78743 0.82116 1.90924 1.51658 1.64398 1.38032 1.42772 1.19474 1.55249 1.15723 1.18584 0.87213 0.91226 0.95428 1.22516 0.97635 0.95289 1.01078 1.24191 0.92588 0.95990 0.97361 1.72864 1.27401 1.14562 0.96859 1.72879 1.08515 1.04008 1.21506 1.24163 0.93171 1.00664 0.97964 0.92804 0.94920 0.93160 0.92551 0.92206 0.92119 0.77165 0.75243 0.81934 0.81068 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 37.16 0.32 -2.41 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.07 16 3 C 0.26 5.66 1.83 -69.08 -0.13 5.53 16 4 H 0.05 1.25 6.64 -51.93 -0.34 0.90 16 5 C -0.54 -13.67 9.31 -34.44 -0.32 -14.00 16 6 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 9 Si 0.88 20.76 24.41 -169.99 -4.15 16.61 16 10 H -0.27 -6.29 6.83 56.52 0.39 -5.90 16 11 H -0.26 -6.02 6.53 56.52 0.37 -5.66 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.70 -12.29 5.03 -59.81 -0.30 -12.59 16 14 C 0.69 11.43 6.91 -86.92 -0.60 10.83 16 15 O -0.57 -11.18 11.19 5.29 0.06 -11.12 16 16 N -0.68 -8.31 5.36 -14.01 -0.08 -8.38 16 17 C 0.19 2.34 6.35 -83.40 -0.53 1.81 16 18 C -0.13 -1.76 8.82 -39.03 -0.34 -2.11 16 19 C 0.06 0.74 11.30 -17.43 -0.20 0.55 16 20 N -0.27 -3.85 11.50 30.51 0.35 -3.50 16 21 N -0.23 -3.16 11.49 30.68 0.35 -2.81 16 22 C 0.01 0.10 11.27 -17.15 -0.19 -0.09 16 23 H 0.05 1.09 7.84 -51.93 -0.41 0.68 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.94 5.64 -51.93 -0.29 0.65 16 26 H 0.06 1.25 3.21 -51.93 -0.17 1.08 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.39 5.89 8.56 -40.82 -0.35 5.54 16 30 H 0.41 3.51 8.84 -40.82 -0.36 3.15 16 31 H 0.16 2.32 6.52 -52.49 -0.34 1.98 16 32 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 274.21 15.07 4.13 4.13 Total: -1.00 -31.02 274.21 -4.64 -35.66 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.56 Total: 7.42 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.23 Total: -0.88 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 1.10 Total: -51.84 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.15 Total: 16.61 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.02 -4.64 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662500853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.829 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds